Mercurial > repos > jeremie > breakdancer_bin
comparison breakdancer.xml @ 15:18d9c156ecd9 draft
Uploaded
| author | jeremie |
|---|---|
| date | Wed, 02 Jul 2014 10:18:59 -0400 |
| parents | c220f4acef3f |
| children | 5bfef0cee99b |
comparison
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| 14:2c3b8a1d8f4b | 15:18d9c156ecd9 |
|---|---|
| 12 <!-- required --> | 12 <!-- required --> |
| 13 -i1 $inputBamFile | 13 -i1 $inputBamFile |
| 14 -o1 $outputRawFile | 14 -o1 $outputRawFile |
| 15 <!-- optional --> | 15 <!-- optional --> |
| 16 -o2 $outputVcfFile | 16 -o2 $outputVcfFile |
| 17 #if $chromosome: | |
| 17 -o $chromosome | 18 -o $chromosome |
| 19 #end if | |
| 18 -s $minLength | 20 -s $minLength |
| 19 -c $cutoff | 21 -c $cutoff |
| 20 -m $maxSvSize | 22 -m $maxSvSize |
| 21 -q $minMapQuality | 23 -q $minMapQuality |
| 22 -r $minReadDepth | 24 -r $minReadDepth |