Mercurial > repos > jeltje > samtools_1_18_mpileup
changeset 13:077445b22c17 draft default tip
Uploaded
| author | jeltje |
|---|---|
| date | Mon, 12 Jan 2015 15:58:45 -0500 |
| parents | 0cad2e7f3414 |
| children | |
| files | tool-data/picard_index.loc.sample tool_data_table_conf.xml.sample |
| diffstat | 2 files changed, 7 insertions(+), 26 deletions(-) [+] |
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--- a/tool-data/picard_index.loc.sample Mon Jan 12 15:13:11 2015 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,26 +0,0 @@ -#This is a sample file distributed with Galaxy that enables tools -#to use a directory of Picard dict and associated files. You will need -#to create these data files and then create a picard_index.loc file -#similar to this one (store it in this directory) that points to -#the directories in which those files are stored. The picard_index.loc -#file has this format (longer white space is the TAB character): -# -#<unique_build_id> <dbkey> <display_name> <fasta_file_path> -# -#So, for example, if you had hg18 indexed and stored in -#/depot/data2/galaxy/srma/hg18/, -#then the srma_index.loc entry would look like this: -# -#hg18 hg18 hg18 Pretty /depot/data2/galaxy/picard/hg18/hg18.fa -# -#and your /depot/data2/galaxy/srma/hg18/ directory -#would contain the following three files: -#hg18.fa -#hg18.dict -#hg18.fa.fai -# -#The dictionary file for each reference (ex. hg18.dict) must be -#created via Picard (http://picard.sourceforge.net). Note that -#the dict file does not have the .fa extension although the -#path list in the loc file does include it. -#
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.sample Mon Jan 12 15:58:45 2015 -0500 @@ -0,0 +1,7 @@ +<tables> + <!-- Location of SAMTools indexes and other files --> + <table name="picard_index" comment_char="#"> + <columns>value, dbkey, name, path</columns> + <file path="tool-data/sam_fa_indices.loc" /> + </table> +</tables>