# HG changeset patch
# User jeltje
# Date 1421092788 18000
# Node ID 97b524d88b3627a055f6442b87f744cb429e8d78
# Parent  48161d4bd7629efe6a5727a7f8c36ed89e41ecc1
Uploaded

diff -r 48161d4bd762 -r 97b524d88b36 samtools_mpileup.xml
--- a/samtools_mpileup.xml	Mon Jan 12 14:57:42 2015 -0500
+++ b/samtools_mpileup.xml	Mon Jan 12 14:59:48 2015 -0500
@@ -1,13 +1,13 @@
-<tool id="samtools_0_1_18_mpileup" name="mpileup" version="1.0.0">
+<tool id="samtools_1_18_mpileup" name="mpileup" version="1.0.0">
   <requirements>
       <requirement type="package" version="0.1.18">samtools</requirement>
   </requirements>
   <description>creates mpileup for VarScan2</description>
-  <command>samtools mpileup -q 1 -B "$input1" "$input2" > "$output1"
+  <command>samtools mpileup -q 1 -B "$bamc" "$bamt" > "$output1"
   </command>
   <inputs>
-    <param name="input1" type="data" format="bam" label="BAM File" />
-    <param name="input2" type="data" format="bam" label="BAM File" />
+    <param name="bamc" type="data" format="bam" label="BAM File" />
+    <param name="bamt" type="data" format="bam" label="BAM File" />
   </inputs>
   <outputs>
     <data name="output1" format="txt" />