# HG changeset patch
# User jeltje
# Date 1421096325 18000
# Node ID 077445b22c17715611847d56210626d5071794ef
# Parent  0cad2e7f3414a57157f6680335d8a102c2e90e4d
Uploaded

diff -r 0cad2e7f3414 -r 077445b22c17 tool-data/picard_index.loc.sample
--- a/tool-data/picard_index.loc.sample	Mon Jan 12 15:13:11 2015 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,26 +0,0 @@
-#This is a sample file distributed with Galaxy that enables tools
-#to use a directory of Picard dict and associated files. You will need
-#to create these data files and then create a picard_index.loc file 
-#similar to this one (store it in this directory) that points to 
-#the directories in which those files are stored. The picard_index.loc 
-#file has this format (longer white space is the TAB character):
-#
-#<unique_build_id>		<dbkey>		<display_name>		<fasta_file_path>
-#
-#So, for example, if you had hg18 indexed and stored in 
-#/depot/data2/galaxy/srma/hg18/, 
-#then the srma_index.loc entry would look like this:
-#
-#hg18	hg18	hg18 Pretty		/depot/data2/galaxy/picard/hg18/hg18.fa
-#
-#and your /depot/data2/galaxy/srma/hg18/ directory
-#would contain the following three files:
-#hg18.fa
-#hg18.dict
-#hg18.fa.fai
-#
-#The dictionary file for each reference (ex. hg18.dict) must be 
-#created via Picard (http://picard.sourceforge.net). Note that
-#the dict file does not have the .fa extension although the
-#path list in the loc file does include it.
-#
diff -r 0cad2e7f3414 -r 077445b22c17 tool_data_table_conf.xml.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_data_table_conf.xml.sample	Mon Jan 12 15:58:45 2015 -0500
@@ -0,0 +1,7 @@
+<tables>
+    <!-- Location of SAMTools indexes and other files -->
+    <table name="picard_index" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="tool-data/sam_fa_indices.loc" />
+    </table>
+</tables>