# HG changeset patch
# User jeltje
# Date 1420750670 18000
# Node ID 12b8d86aa06bf7762b36ba784797d01cce90bb27
# Parent  ef60e9bf0b32b6df5d264a6844ea56965fa8fa5e
Uploaded

diff -r ef60e9bf0b32 -r 12b8d86aa06b tool_dependencies_2.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies_2.xml	Thu Jan 08 15:57:50 2015 -0500
@@ -0,0 +1,25 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="R" version="3.1.2">
+        <repository changeset_revision="0:7cb487a32bde" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+
+    <package name="DNAcopy" version="1.40.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_file">http://www.bioconductor.org/packages/release/bioc/src/contrib/DNAcopy_1.40.0.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="0:7cb487a32bde" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                            <package name="R" version="3.1.2" />
+                    </repository>
+                </action>
+                <action type="shell_command">export R_LIBS_USER=$INSTALL_DIR &amp;&amp; R CMD INSTALL DNAcopy_1.40.0.tar.gz</action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="R_LIBS_USER">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        </readme>
+    </package>
+</tool_dependency>