Mercurial > repos > jeltje > package_dnacopy_1_40_0

view tool_dependencies.xml @ 0:ef60e9bf0b32 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author jeltje
date Thu, 08 Jan 2015 15:21:27 -0500
parents
children
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="R_3_1_1 " version="3.1.1">
        <repository changeset_revision="d9964efbfbe3" name="package_r_3_1_1" owner="fubar" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>

    <package name="DNAcopy" version="1.40.0">
        <install version="1.0">
            <actions>
                <action type="download_file">http://www.bioconductor.org/packages/release/bioc/src/contrib/DNAcopy_1.40.0.tar.gz</action>
                <action type="set_environment_for_install">
                    <repository changeset_revision="d9964efbfbe3" name="package_r_3_1_1" owner="fubar" toolshed="https://testtoolshed.g2.bx.psu.edu">
                            <package name="R_3_1_1" version="3.1.1" />
                    </repository>
                </action>
                <action type="shell_command">export R_LIBS_USER=$INSTALL_DIR &amp;&amp; R CMD INSTALL DNAcopy_1.40.0.tar.gz</action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="R_LIBS_USER">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
</tool_dependency>