# HG changeset patch
# User jdv
# Date 1508103160 14400
# Node ID 18d17a5bfe1195f17d6780a31f09465f628b5570
# Parent  15e64c5938e62d6bfeba328e1eacd2fc3ac5c74d
planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/porechop commit da020fbee6e2bd91bc4a8d0850dc601db34ac82b

diff -r 15e64c5938e6 -r 18d17a5bfe11 porechop.xml
--- a/porechop.xml	Sun Oct 15 12:30:20 2017 -0400
+++ b/porechop.xml	Sun Oct 15 17:32:40 2017 -0400
@@ -35,12 +35,6 @@
             --output "out/$filename"
         #end if
 
-        ##if $input.is_of_type('fastq')
-            --format fastq
-        ##else:
-            ##--format fasta
-        ##end if
-
         --threads  \${GALAXY_SLOTS:-1}
 
     ##--Demultiplex Options--------------------------
@@ -146,14 +140,14 @@
 
         <collection type="list" name="output_collection_fastq" label="${tool.name} on ${on_string}">
             <filter>out_format == 'fastq'</filter>
-            <discover_datasets pattern="(?P&lt;name&gt;.*)" directory="out" format="fastqsanger" />
+            <discover_datasets pattern="__designation_and_ext__" directory="out" format="fastqsanger" />
         </collection>
         <collection type="list" name="output_collection_fasta" label="${tool.name} on ${on_string}">
             <filter>out_format == 'fasta'</filter>
-            <discover_datasets pattern="(?P&lt;name&gt;.*)" directory="out" format="fasta" />
+            <discover_datasets pattern="__designation_and_ext__" directory="out" format="fasta" />
         </collection>
 
-        <data format="table" name="result_table" label="${tool.name} on ${on_string} (summary)" /> 
+        <data format="tabular" name="result_table" label="${tool.name} on ${on_string} (summary)" /> 
     </outputs>
 
     <!-- ***************************************************************** -->