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1 <tool id="2021_05_eics_merged" name="EICs-synchronized -> EICs-merged" version="0.0.1">
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2
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3 <description> </description>
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4
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5
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6 <requirements>
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7 <requirement type="package" >scilab</requirement>
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8 </requirements>
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9
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10
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11 <stdio>
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12 <exit_code range="1:" level="fatal" />
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13 </stdio>
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14
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15
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16 <command>
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17 <![CDATA[
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18 $__root_dir__/packages/scilab-*/bin/scilab-cli -nb -quit -f ${script_file}
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19 ]]>
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20 </command>
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21
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22
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23 <configfiles>
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24 <configfile name="script_file">
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25 <![CDATA[ exec("$__tool_directory__/src/mz_8_merge_list_x_tr_mz4.sci",-1); ...
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26 lasterror(); ...
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27 load("${list_eic4_files}"); ... // the variable name is also: list_eic4_files
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28 [x_tr_mz4,ppm_coupe]=mz_8_merge_list_x_tr_mz4(list_eic4_files); ...
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29 div2tab(x_tr_mz4,"${merged_x_tr_mz4file}"); ...
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30 if ~isempty(lasterror(%f)) then ...
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31 write(0,lasterror()); ...
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32 end; ]]>
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33 </configfile>
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34 </configfiles>
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35
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36
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37 <inputs>
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38 <param name="list_eic4_files" format="mat" type="data" label="Select X data" help="a list of EIC-synchronized files with all the same mz values "/>
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39 </inputs>
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40
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41
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42 <outputs>
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43 <data name="merged_x_tr_mz4file" format="tabular" label="EICs-merged"/>
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44 </outputs>
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45
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46
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47 <tests>
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48
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49 <test>
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50 <param name="list_eic4_files" value="EICs-synchronized.mat"/>
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51 <output name="merged_x_tr_mz4file" file="EICs-merged.tab" compare="sim_size" delta="1000" />
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52 </test>
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53
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54 </tests>
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55
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56 <help>
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57
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58
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59 .. class:: infomark
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60
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61 **Authors** Jean-Claude Boulet (INRAE)
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62
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63
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64 ---------------------------------------------------
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65
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66 ==========================
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67 MEAN OF SEVERAL EICS FILES
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68 ==========================
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69
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70 -----------
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71 Description
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72 -----------
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73
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74 Several EIC files correspond to the same sample (e.g. repetitions). They share the same m/z values, not necessary the same retention times even if their RTi should be close.
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75
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76 This function merges them into a single (RT x m/z) dataset
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77
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78
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79 -----------
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80 Input files
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81 -----------
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82
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83 **Select Xdata**
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84
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85 At least two datasets, gathered into a single HDF5-scilab .dat file issued from the function: EICs-individual - EICs-synchronized
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86
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87 ------------
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88 Output files
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89 ------------
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90
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91 **EICs-merged**
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92
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93 The merged EICs in a tabular file.
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94
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95
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96 </help>
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97
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98
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99 <citations>
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100
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101 </citations>
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102
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103 </tool>
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