Mercurial > repos > jcb-mpl > eics_first_extraction
view src/mz_eic5_step2.sci @ 1:1f8d0aa48b1d draft
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| author | jcb-mpl |
|---|---|
| date | Tue, 27 Apr 2021 14:14:06 +0000 |
| parents | 245b2c2b3d75 |
| children |
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function x_tr_mz3=mz_eic5_step2(resbary,diff_mz_min,signal_thresh,durb_wats) // avant 8jan20: function [x_tr_mz3,resbary]=mz_eic5_step2(resbary,diff_mz_min,signal_thresh,durb_wats) // fonction qui suit: mz_eic5_step1 // cette fonction mobilise les fonctions suivantes: // exec('mz_3_extract_all_mz2.sci',-1); // exec('mz_4_scan_mz_raw6.sci',-1); // exec('mz_5_tr_matrix6bis.sci',-1); // exec('mz_6bis_durbin_watson.sci',-1) // exec('mz_6_rescan_mz2.sci',-1) // exec('mz_7_dwcleaning.sci',-1) // Arguments: // resbary: le SM au format barycentrique = centroide // diff_mz_min: seuil de m/z; ex: 0,0024 // signal_thresh: un signal minimum regroupant plusieurs signaux sur le même TR; ex: 30000 sur vin // durb_wats: Durbin_Watson; on recherche durb_wats=0; ex de seuil: 1 // extraction de tous les m/z de resbary allmz=mz_3_extract_all_mz2(resbary); // tri de la liste de m/z allmz2=mz_4_scan_mz_raw6(allmz,diff_mz_min,signal_thresh); clear allmz; //8jan20 // calcul de la matrice x_tr_mz3: // avant 8jan20: [x_tr_mz,calculs_stats_tr_mz]=mz_5_tr_matrix6bis(resbary,allmz2,diff_mz_min,signal_thresh); x_tr_mz=mz_5_tr_matrix6bis(resbary,allmz2,diff_mz_min,signal_thresh); clear resbary allmz2; // 8jan20 x_tr_mz2=mz_6_rescan_mz2(x_tr_mz,1.2*diff_mz_min); clear x_tr_mz ; // 8jan20 x_tr_mz3=mz_7_dwcleaning(x_tr_mz2,durb_wats); endfunction
