# HG changeset patch
# User jcb-mpl
# Date 1652357571 0
# Node ID d5bbd682ba770331ade36563b45e22bc0bd17b24
# Parent  6e260ccff3d8dfdf708e87a7c643fdc1b98cb0a6
Deleted selected files

diff -r 6e260ccff3d8 -r d5bbd682ba77 2018_07_compression.xml
--- a/2018_07_compression.xml	Thu May 12 12:12:43 2022 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,134 +0,0 @@
-<tool id="2021_05_mz_1_k_compression" name="centroid MS data -> compression" version="0.0.1">
-    <description> by a factor k  </description>
-
-
-  <requirements>
-    <requirement type="package" version="6.0.2">scilab</requirement>
-  </requirements>
-
-
-  <stdio>
-    <exit_code range="1:" level="fatal" />
-  </stdio>
-
-
-  <command> <![CDATA[
-    if [ -d $__root_dir__/packages/scilab-6.1.0 ]; then $__root_dir__/packages/scilab-6.1.0/bin/scilab-cli -nb -quit -f $* < ${script_file}; else scilab-cli -nb -quit -f $* < ${script_file}; fi
-]]>
-  </command>
-
-
-   <configfiles>
-    <configfile name="script_file">
-        <![CDATA[ exec("$__tool_directory__/src/mz_1_out_of_k.sci",-1); ...
-        exec("$__tool_directory__/src/mz_1_merge_by_k.sci",-1); ...
-        lasterror(); ...
-        k=${k}; ...
-        option=${option}; ...
-        load("${resbary_in}"); ... // the variable name must be resbary
-        if option==1 then ...
-            resbary_out=mz_1_out_of_k(resbary,k); ...
-        else ...
-            resbary_out=mz_1_merge_by_k(resbary,k); ...
-        end; ...
-        if ~isdef('resbary_out') then ...
-           disp('resbary_out is not defined'); ...
-        end; ...
-        resbary=resbary_out; ...  // the variable name must be resbary
-        save("${resbary_out}",'resbary'); ...
-        if ~isempty(lasterror(%f)) then ...
-        write(0,lasterror()); ...
-        end; ]]>
-    </configfile>
-  </configfiles>
-
-
-  <inputs>
-    <param name="resbary_in"       format="mat"         type="data"      label="MS-centroid"  help="contains the fields .time et .mzdata"   />
-    <param name="k"     value="1"  type="integer"     min="1"   max="100"   label="k"        help="a number of RTs"     />
-  <param name="option"     value="2"  type="integer"     min="1"   max="2"   label="option"        help="1= 1 out of k RT; 2= mean of k RT"     />
-</inputs>
-
-  <outputs>
-    <data name="resbary_out"   format="mat"     label="MS-compressed"  />
-  </outputs>
-  
-  
-  <tests>
-  
-    <test>
-       <param name="resbary_in" value="VI2016_AC_4Areduit_1centroide.mat"/>
-       <param name="k" value="3"/>
-       <param name="option" value="1"/>
-       <output name="resbary_out"   file="VI2016_AC_4Acentroide-1_k1outof3.mat" compare="sim_size" delta="1000" />
-    </test>
-    
-    <test>
-       <param name="resbary_in" value="VI2016_AC_4Areduit_1centroide.mat"/>
-       <param name="k" value="3"/>
-       <param name="option" value="2"/>
-       <output name="resbary_out"   file="VI2016_AC_4Acentroide-1_k_3mean.mat" compare="sim_size" delta="1000" />
-    </test>
-    
-    
-    
-  </tests>
-  
-  
-  
-<help>
-
-
-**Authors**  Jean-Claude Boulet (INRAE).
-
-
----------------------------------------------------
-
-=================================
-COMPRESSION OF A CENTROID MS DATA
-=================================
-
-
------------
-Description
------------
-
-This function reduces by a factor k the number of RTs and associated mass spectra. 
-
-
------
-Input
------
-
-**centroid MS data**
-
-A centroid MS data, at the HDF5-scilab format.
-
-**k**
-
-The compression factor. 
-
-**option**
-
-- 1: selects one out of k RTs and associated ms.
-
-- 2: merges by k the RTs and associated ms 
-
-
--------
-Outputs
--------
-
-**compressed MS data**
-
-A centroid MS data, similar to the input, but with k times less RTs and ms. 
-
-</help>
-
-
-<citations>
-
-</citations>
-
-
-</tool>