Mercurial > repos > jcb-mpl > detrend
changeset 13:0cd4026ab644 draft default tip
Deleted selected files
| author | jcb-mpl |
|---|---|
| date | Fri, 25 Jun 2021 09:24:51 +0000 |
| parents | 3a9c0c99bb54 |
| children | |
| files | detrend_sci602.xml |
| diffstat | 1 files changed, 0 insertions(+), 129 deletions(-) [+] |
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--- a/detrend_sci602.xml Fri Jun 25 09:24:37 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,129 +0,0 @@ -<tool id="V19.10_detrend_sci" name="DT" version="0.1"> - <description> Detrend </description> - -<requirements> - <requirement type="set_environment" >scilab-cli</requirement> - </requirements> - - <stdio> - <exit_code range="1:" level="fatal" /> - </stdio> - - <command><![CDATA[ - scilab-cli -nb -quit -f $* < ${script_file} - ]]> - </command> - - <configfiles> - <configfile name="script_file"> - lasterror(); ... - if ~isdef('pls') then ... - atomsInstall('FACT'); ... - atomsLoad('FACT'); ... - end; ... - lasterror(%f); ... - ... - x=glx_tab2div("${Xdata.file_name}"); ... - x2=detrending(x,${degre}); ... - div2tab(x2,"${DT}"); ... - ... - if ~isempty(lasterror(%f)) then ... - write(0,lasterror()); ... - end ;... - quit - </configfile> - </configfiles> - - - <inputs> - <param name="Xdata" format="tabular" type="data" label="Select X data" help="Dataset (n x p) containing the n spectra of p variables."/> - <param name="degre" type="integer" value="2" min="0" max="5" label="Degree of the polynom"/> - </inputs> - - <outputs> - <data name="DT" format="tabular" label="DT(${Xdata.name})" /> - </outputs> - - <tests> - <test> - <param name="Xdata" value="test_detrend_input.tabular"/> - <param name="degre" value="2" /> - <output name="DT" > - <assert_contents> - <has_text text="0.000838"/> - <has_text text="0.001114"/> - <has_text text="0.000977"/> - <has_text text="0.001175"/> - <has_text text="0.000690"/> - </assert_contents> - </output> - </test> - </tests> - -<help> - -.. class:: warningmark - -**TIP:** If your data is not TAB delimited, use *Convert format data Tools->Convert* - -.. class:: infomark - -**Authors** Fabien Gogé (IRSTEA), Virginie Rossard (INRA), Eric Latrille (INRA), Jean-Michel Roger (IRSTEA), Jean-Claude Boulet (INRA) - - ---------------------------------------------------- - -======= -DETREND -======= - ------------ -Description ------------ - - -Performs **Detrend**, a baseline correction by orthogonal projection onto a n-order polynomial. -Missing values are not allowed. This scripts uses the FACT-version module. - - ------------ -Input files ------------ - -A matrix of numeric data with headers (tabular format) and decimal separator ".". - - -+--------+-------+--------+ -| Name | 400 | 402 | -+========+=======+========+ -|M102T645| 0.63 |0.64 | -+--------+-------+--------+ -|M105T604| 0.5 |0.49 | -+--------+-------+--------+ - ----------- -Parameters ----------- - -**Degree of the polynom** - -The degree of the polynom used in the Detrend correction - ------------- -Output files ------------- - -**DT(input.file_name)** - -A dataset containing the input file after the Detrend correction; format = tabular. - -</help> - -<citations> - - <citation type="doi">10.1366/0003702894202201</citation> - - </citations> - - -</tool>