# HG changeset patch # User jbrayet # Date 1442923276 14400 # Node ID 42d9f30eb76a5b697bdf66a5cb8385c52b82f43a # Parent 5aa022e3a2aefc4ad74d8821c129d459339f246b Uploaded diff -r 5aa022e3a2ae -r 42d9f30eb76a compareMatrices_wrapper.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/compareMatrices_wrapper.xml Tue Sep 22 08:01:16 2015 -0400 @@ -0,0 +1,131 @@ + + + Comparison between two collections of position-specific scoring matrices + + python + + + compareMatrices_wrapper.py -matrix_1 $matrixFile_1 -format1 $matrix_format_1 -matrix_2 $matrixFile_2 -format2 $matrix_format_2 -outGalaxy $txtFile -server $server + #if $advanced_parameters.adv_param == "show": + #if $advanced_parameters.allReturn.all_return == "no": + -returnResults $advanced_parameters.allReturn.return + #else: + -returnResults all + #end if + #end if + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +**What it does** + +.. class:: infomark + +Compare two collections of position-specific scoring matrices (PSSM), and return various similarity statistics + matrix alignments (pairwise, one-to-n). + + + + @article{Medina-Rivera22042015, + author = {Medina-Rivera, Alejandra and Defrance, Matthieu and Sand, Olivier and Herrmann, Carl and Castro-Mondragon, Jaime A. and Delerce, Jeremy and Jaeger, Sébastien and Blanchet, Christophe and Vincens, Pierre and Caron, Christophe and Staines, Daniel M. and Contreras-Moreira, Bruno and Artufel, Marie and Charbonnier-Khamvongsa, Lucie and Hernandez, Céline and Thieffry, Denis and Thomas-Chollier, Morgane and van Helden, Jacques}, + title = {RSAT 2015: Regulatory Sequence Analysis Tools}, + year = {2015}, + doi = {10.1093/nar/gkv362}, + URL = {http://nar.oxfordjournals.org/content/early/2015/04/21/nar.gkv362.abstract}, + eprint = {http://nar.oxfordjournals.org/content/early/2015/04/21/nar.gkv362.full.pdf+html}, + journal = {Nucleic Acids Research} + } + +