Mercurial > repos > jbrayet > maketssdist_histones_1_0_docker

comparison makeTSSdist_wrapper_hist.sh @ 6:c36291280fa2 draft default tip

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author jbrayet
date Mon, 04 Jan 2016 10:40:38 -0500
parents 88a8e2392731
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5:938dbf270dde 6:c36291280fa2
31 LOCAL_DIR=`( cd -P $(dirname $0); pwd)` 31 LOCAL_DIR=`( cd -P $(dirname $0); pwd)`
32 DOCKER_PATH='/usr/bin/maketssdist_histones' 32 DOCKER_PATH='/usr/bin/maketssdist_histones'
33 33
34 34
35 OUTPUT_DIR=`dirname $OUTPUT` 35 OUTPUT_DIR=`dirname $OUTPUT`
36 R_PATH='/usr/bin/R-3.1.0/bin/Rscript --slave ' 36 R_PATH='Rscript --slave '
37 37
38 databasePath=$(find / -type d -name files | grep database) 38 databasePath=$(find / -type d -name files | grep database)
39 39
40 mkdir -p $databasePath/nebulaAnnotations 40 mkdir -p $databasePath/nebulaAnnotations
41 mkdir -p $databasePath/nebulaAnnotations/noIdenticalTransc 41 mkdir -p $databasePath/nebulaAnnotations/noIdenticalTransc