Mercurial > repos > jbrayet > maketssdist_1_0_docker

comparison makeTSSdist_wrapper.sh @ 6:f2d96c2e5407 draft

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Uploaded
author jbrayet
date Mon, 04 Jan 2016 05:47:10 -0500
parents 10c7433a68b4
children bc8f639d89db
comparison
equal deleted inserted replaced
5:10c7433a68b4 6:f2d96c2e5407
92 92
93 noIdenticalTranscPath=$nebulaAnnotationPath/noIdenticalTransc 93 noIdenticalTranscPath=$nebulaAnnotationPath/noIdenticalTransc
94 94
95 95
96 if [ -r $REG ]; then 96 if [ -r $REG ]; then
97 perl $DOCKER_PATHcrossBedWithGenes.pl -g $noIdenticalTranscPath/$GENOME.noIdenticalTransc.txt -f $CHIPFILE -reg $REG -o $OUTPUT.annotated 97 perl $DOCKER_PATH/crossBedWithGenes.pl -g $noIdenticalTranscPath/$GENOME.noIdenticalTransc.txt -f $CHIPFILE -reg $REG -o $OUTPUT.annotated
98 else 98 else
99 perl $DOCKER_PATH/crossBedWithGenes.pl -g $noIdenticalTranscPath/$GENOME.noIdenticalTransc.txt -f $CHIPFILE -o $OUTPUT.annotated 99 perl $DOCKER_PATH/crossBedWithGenes.pl -g $noIdenticalTranscPath/$GENOME.noIdenticalTransc.txt -f $CHIPFILE -o $OUTPUT.annotated
100 fi 100 fi
101 101
102 if [ -r $CONTROLFILE ]; then 102 if [ -r $CONTROLFILE ]; then