# HG changeset patch
# User jbrayet
# Date 1439458735 14400
# Node ID 6c05e086f736da082b01adaba714f230eeb5f200
# Parent 526de88709a8535fd8ae5131401f402da8fe3775
Deleted selected files
diff -r 526de88709a8 -r 6c05e086f736 makeTSSdist_wrapper.xml
--- a/makeTSSdist_wrapper.xml Thu Aug 13 05:22:28 2015 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,117 +0,0 @@
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- Get peak distribution around TSS
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- hmisc
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-#if str( $if_PDF ) == '0' and $use_reg.use_reg_selector == "no" and $use_control.use_control_selector == "no" #makeTSSdist_wrapper.sh -f $inputfile -l $left -o $outputPNG -r $right -u $stats -v $input_organism.version -p 0 #elif str( $if_PDF ) == '1' and $use_reg.use_reg_selector == "no" and $use_control.use_control_selector == "no" #makeTSSdist_wrapper.sh -f $inputfile -l $left -o $outputPDF -r $right -u $stats -v $input_organism.version -p 1 #elif str( $if_PDF ) == '0' and $use_reg.use_reg_selector == "no" and $use_control.use_control_selector == "yes" # makeTSSdist_wrapper.sh -f $inputfile -c $controlfile -o $outputPNG -l $left -r $right -u $stats -v $input_organism.version -p 0 #elif str( $if_PDF ) == '1' and $use_reg.use_reg_selector == "no" and $use_control.use_control_selector == "yes" # makeTSSdist_wrapper.sh -f $inputfile -c $controlfile -o $outputPDF -l $left -r $right -u $stats -v $input_organism.version -p 1 #elif str( $if_PDF ) == '0' and $use_reg.use_reg_selector == "yes" and $use_control.use_control_selector == "no" # makeTSSdist_wrapper.sh -f $inputfile -e $regfile -l $left -o $outputPNG -r $right -u $stats -v $input_organism.version -p 0 #elif str( $if_PDF ) == '1' and $use_reg.use_reg_selector == "yes" and $use_control.use_control_selector == "no" # makeTSSdist_wrapper.sh -f $inputfile -e $regfile -l $left -o $outputPDF -r $right -u $stats -v $input_organism.version -p 1 #elif str( $if_PDF ) == '0' and $use_reg.use_reg_selector == "yes" and $use_control.use_control_selector == "yes" #makeTSSdist_wrapper.sh -f $inputfile -c $controlfile -l $left -o $outputPNG -r $right -u $stats -v $input_organism.version -e $regfile -p 0 #else # makeTSSdist_wrapper.sh -f $inputfile -c $controlfile -l $left -o $outputPDF -r $right -u $stats -v $input_organism.version -e $regfile -p 1 #end if
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- (if_PDF == 0)
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- (if_PDF == True)
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-**What it does**
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-This tool creates a .png file with distribution of peaks around gene TSS
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- @article{Boeva01102012,
- author = {Boeva, Valentina and Lermine, Alban and Barette, Camille and Guillouf, Christel and Barillot, Emmanuel},
- title = {Nebula—a web-server for advanced ChIP-seq data analysis},
- volume = {28},
- number = {19},
- pages = {2517-2519},
- year = {2012},
- doi = {10.1093/bioinformatics/bts463},
- URL = {http://bioinformatics.oxfordjournals.org/content/28/19/2517.abstract},
- eprint = {http://bioinformatics.oxfordjournals.org/content/28/19/2517.full.pdf+html},
- journal = {Bioinformatics}
- }
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diff -r 526de88709a8 -r 6c05e086f736 tool_dependencies.xml
--- a/tool_dependencies.xml Thu Aug 13 05:22:28 2015 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
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