Mercurial > repos > jbrayet > docker_ncpro_seq
annotate tool_dependencies.xml @ 4:9988fed77d21 draft default tip
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| author | jbrayet |
|---|---|
| date | Thu, 28 Jan 2016 09:36:41 -0500 |
| parents | b3d525adf5ba |
| children |
| rev | line source |
|---|---|
| 3 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 4 | 3 <package name="docker_nc_pro_seq" version="0.1"> |
| 3 | 4 <install version="1.0"> |
| 5 <actions> | |
| 4 | 6 <action type="shell_command">wget Dockerfile http://sourceforge.net/projects/ncproseq/files/docker/Dockerfile -P /var/lib/docker</action> |
| 7 <action type="shell_command">docker build -t ncpro:1.0 - < /var/lib/docker/Dockerfile</action> | |
| 3 | 8 </actions> |
| 9 </install> | |
| 10 <readme> | |
| 4 | 11 ncPRO-seq (Non-Coding RNA PROfiling in sRNA-seq) is a tool for annotation and profiling of ncRNAs using deep-sequencing data developed by the Bioinformatics Laboratory of the institut Curie. This comprehensive and flexible ncRNA analysis pipeline, aims in interrogating and performing detailed analysis on small RNAs derived from annotated non-coding regions in miRBase, Rfam and repeatMasker, and regions defined by users. The ncPRO-seq pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families. |
| 3 | 12 </readme> |
| 13 </package> | |
| 14 </tool_dependency> |