Mercurial > repos > jbrayet > ccat_1_0_docker

changeset 3:a1f3f203d2c9 draft

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Uploaded
author jbrayet
date Thu, 21 Jan 2016 09:36:05 -0500
parents 11f45bd03b4b
children e55d0b7dbfab
files ccat_wrapper.xml
diffstat 1 files changed, 2 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/ccat_wrapper.xml	Thu Jan 21 09:29:16 2016 -0500
+++ b/ccat_wrapper.xml	Thu Jan 21 09:36:05 2016 -0500
@@ -7,7 +7,7 @@
   #if str( $options_type[ 'options_type_selector' ] ) == 'advanced':
   '$input_advanced_config_file' 
   #else:
-  '${ options_type.input_config_file.fields.path }'
+  '$options_type.input_config_file'
   #end if
   'CCAT' 
   '$output_peak_file' '$output_region_file' '$output_top_file' '$output_log_file' '${__root_dir__}'</command>
@@ -30,11 +30,7 @@
         <option value="advanced">Show Advanced Options</option>
       </param>
       <when value="basic">
-        <param name="input_config_file" type="select" label="Select a pre-defined configuration file">
-          <options from_data_table="ccat_configurations">
-            <validator type="no_options" message="No configurations are available"/>
-          </options>
-        </param>
+        <param name="input_config_file" type="txt" label="Select a pre-defined configuration file" />
       </when>
       <when value="advanced">
         <param name="fragment_size" type="integer" label="Length of DNA fragment" value="200"/>