# HG changeset patch
# User jbrayet
# Date 1451996567 18000
# Node ID 83d4899403b040df9b4d55e2bd10a3b88c4afac7
# Parent  6a818827ed9d00b66ca9b119a1f28d09047c1a64
Uploaded

diff -r 6a818827ed9d -r 83d4899403b0 annotateGenes_wrapper.sh
--- a/annotateGenes_wrapper.sh	Tue Jan 05 07:22:36 2016 -0500
+++ b/annotateGenes_wrapper.sh	Tue Jan 05 07:22:47 2016 -0500
@@ -133,11 +133,11 @@
     done
 
   fi
-  echo "3: cat $R_PATH $DOCKER_PATH/geneDist.R --args $OUTSTAT $OUTPUT $LOG $CONTROLSTAT $PDF $BOOTSTRAP " >>$LOGTMP
-  cat $R_PATH $DOCKER_PATH/geneDist.R --args $OUTSTAT $OUTPUT $LOG $CONTROLSTAT $PDF $BOOTSTRAP 2>>$LOGTMP >>$LOGTMP
+  echo "3: $R_PATH $DOCKER_PATH/geneDist.R --args $OUTSTAT $OUTPUT $LOG $CONTROLSTAT $PDF $BOOTSTRAP " >>$LOGTMP
+  $R_PATH $DOCKER_PATH/geneDist.R --args $OUTSTAT $OUTPUT $LOG $CONTROLSTAT $PDF $BOOTSTRAP 2>>$LOGTMP >>$LOGTMP
 else
-  echo "4:  cat $R_PATH $DOCKER_PATH/geneDist.R --args $OUTSTAT $OUTPUT $LOG $PDF" >>$LOGTMP
-  cat $R_PATH $DOCKER_PATH/geneDist.R --args $OUTSTAT $OUTPUT $LOG $PDF 2>>$LOGTMP >>$LOGTMP
+  echo "4: $R_PATH $DOCKER_PATH/geneDist.R --args $OUTSTAT $OUTPUT $LOG $PDF" >>$LOGTMP
+  $R_PATH $DOCKER_PATH/geneDist.R --args $OUTSTAT $OUTPUT $LOG $PDF 2>>$LOGTMP >>$LOGTMP
 fi
 
 if [ -r $LOGTMP ]; then