Mercurial > repos > jbrayet > annotategenes_1_0_docker

diff annotateGenes_wrapper.sh @ 7:83d4899403b0 draft default tip

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author jbrayet
date Tue, 05 Jan 2016 07:22:47 -0500
parents 41170790291b
children
line wrap: on
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--- a/annotateGenes_wrapper.sh	Tue Jan 05 07:22:36 2016 -0500
+++ b/annotateGenes_wrapper.sh	Tue Jan 05 07:22:47 2016 -0500
@@ -133,11 +133,11 @@
     done
 
   fi
-  echo "3: cat $R_PATH $DOCKER_PATH/geneDist.R --args $OUTSTAT $OUTPUT $LOG $CONTROLSTAT $PDF $BOOTSTRAP " >>$LOGTMP
-  cat $R_PATH $DOCKER_PATH/geneDist.R --args $OUTSTAT $OUTPUT $LOG $CONTROLSTAT $PDF $BOOTSTRAP 2>>$LOGTMP >>$LOGTMP
+  echo "3: $R_PATH $DOCKER_PATH/geneDist.R --args $OUTSTAT $OUTPUT $LOG $CONTROLSTAT $PDF $BOOTSTRAP " >>$LOGTMP
+  $R_PATH $DOCKER_PATH/geneDist.R --args $OUTSTAT $OUTPUT $LOG $CONTROLSTAT $PDF $BOOTSTRAP 2>>$LOGTMP >>$LOGTMP
 else
-  echo "4:  cat $R_PATH $DOCKER_PATH/geneDist.R --args $OUTSTAT $OUTPUT $LOG $PDF" >>$LOGTMP
-  cat $R_PATH $DOCKER_PATH/geneDist.R --args $OUTSTAT $OUTPUT $LOG $PDF 2>>$LOGTMP >>$LOGTMP
+  echo "4: $R_PATH $DOCKER_PATH/geneDist.R --args $OUTSTAT $OUTPUT $LOG $PDF" >>$LOGTMP
+  $R_PATH $DOCKER_PATH/geneDist.R --args $OUTSTAT $OUTPUT $LOG $PDF 2>>$LOGTMP >>$LOGTMP
 fi
 
 if [ -r $LOGTMP ]; then