# HG changeset patch # User jasper # Date 1492714032 14400 # Node ID 137a1ee048cc49c894e9eb648cbaf82c9c2fde7c # Parent 3663119f968a8549eb71f2809006c69818f6e4bc Uploaded diff -r 3663119f968a -r 137a1ee048cc PathoMap.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/PathoMap.xml Thu Apr 20 14:47:12 2017 -0400 @@ -0,0 +1,62 @@ + + Pathoscope Map + + pathoscope + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + This module will take your reads and map them against a target library. Then it will map the mapping reads +against a filter library. All the reads that map to the filter library with a score equal or greater than the mapping +score to the target library will be discarded. The reads mapping with a better score to the target library will be +used downstream by the PathoID module. + + + 10.1101/gr.150151.112 + 10.1186/2049-2618-2-33 + 10.1186/1471-2105-15-262 + 10.4137/CIN.S13890 + + diff -r 3663119f968a -r 137a1ee048cc tool-data/pathoscope.loc.sample --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/pathoscope.loc.sample Thu Apr 20 14:47:12 2017 -0400 @@ -0,0 +1,2 @@ +ref_prok_rep_genomes prok /Users/JH/ref +ce11 ce /Users/JH/ref diff -r 3663119f968a -r 137a1ee048cc tool_data_table_conf.xml.sample --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.sample Thu Apr 20 14:47:12 2017 -0400 @@ -0,0 +1,6 @@ + + + value, name, path + +