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comparison test-data/blast xml example3.html @ 101:e780606b7c25 draft

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test new command line parameters, fix small bug
author Jan Kanis <jan.code@jankanis.nl>
date Mon, 30 Jun 2014 17:51:56 +0200
parents 8b3c5d334a84
children b3b5ee557170
comparison
equal deleted inserted replaced
100:8b3c5d334a84 101:e780606b7c25
792 <td>37.4</td> 792 <td>37.4</td>
793 <td>37.4</td> 793 <td>37.4</td>
794 <td>100%</td> 794 <td>100%</td>
795 <td>7.011e-08</td> 795 <td>7.011e-08</td>
796 <td>100%</td> 796 <td>100%</td>
797 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&amp;log$=nuclalign">Subject_3</a></td> 797 <td><a href="http://example.com/example-genebank?id=Subject_3">Subject_3</a></td>
798 </tr> 798 </tr>
799 </table> 799 </table>
800 800
801 </div></div> 801 </div></div>
802 </section> 802 </section>
809 <div class=grey><div class=white> 809 <div class=grey><div class=white>
810 <div class=alignment id=hit3-1> 810 <div class=alignment id=hit3-1>
811 811
812 <div class=linkheader> 812 <div class=linkheader>
813 <div class=right><a href="#description3-1">Descriptions</a></div> 813 <div class=right><a href="#description3-1">Descriptions</a></div>
814 <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&amp;log$=nuclalign">Gene Bank</a> 814 <a class="linkheader" href="http://example.com/example-genebank?id=Subject_3">Gene Bank</a>
815 </div> 815 </div>
816 816
817 <div class=title> 817 <div class=title>
818 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p> 818 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
819 <p class=titleinfo> 819 <p class=titleinfo>
820 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&amp;log$=nuclalign">Subject_3</a> 820 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_3">Subject_3</a>
821 <span class=b>Length:</span> 323 821 <span class=b>Length:</span> 323
822 <span class=b>Number of Matches:</span> 1 822 <span class=b>Number of Matches:</span> 1
823 </p> 823 </p>
824 </div> 824 </div>
825 825
1028 <td>37.4</td> 1028 <td>37.4</td>
1029 <td>37.4</td> 1029 <td>37.4</td>
1030 <td>100%</td> 1030 <td>100%</td>
1031 <td>7.011e-08</td> 1031 <td>7.011e-08</td>
1032 <td>100%</td> 1032 <td>100%</td>
1033 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&amp;log$=nuclalign">Subject_6</a></td> 1033 <td><a href="http://example.com/example-genebank?id=Subject_6">Subject_6</a></td>
1034 </tr> 1034 </tr>
1035 </table> 1035 </table>
1036 1036
1037 </div></div> 1037 </div></div>
1038 </section> 1038 </section>
1045 <div class=grey><div class=white> 1045 <div class=grey><div class=white>
1046 <div class=alignment id=hit6-1> 1046 <div class=alignment id=hit6-1>
1047 1047
1048 <div class=linkheader> 1048 <div class=linkheader>
1049 <div class=right><a href="#description6-1">Descriptions</a></div> 1049 <div class=right><a href="#description6-1">Descriptions</a></div>
1050 <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&amp;log$=nuclalign">Gene Bank</a> 1050 <a class="linkheader" href="http://example.com/example-genebank?id=Subject_6">Gene Bank</a>
1051 </div> 1051 </div>
1052 1052
1053 <div class=title> 1053 <div class=title>
1054 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p> 1054 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
1055 <p class=titleinfo> 1055 <p class=titleinfo>
1056 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&amp;log$=nuclalign">Subject_6</a> 1056 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_6">Subject_6</a>
1057 <span class=b>Length:</span> 2457 1057 <span class=b>Length:</span> 2457
1058 <span class=b>Number of Matches:</span> 1 1058 <span class=b>Number of Matches:</span> 1
1059 </p> 1059 </p>
1060 </div> 1060 </div>
1061 1061
1500 <td>31.9</td> 1500 <td>31.9</td>
1501 <td>31.9</td> 1501 <td>31.9</td>
1502 <td>85%</td> 1502 <td>85%</td>
1503 <td>2.981e-06</td> 1503 <td>2.981e-06</td>
1504 <td>100%</td> 1504 <td>100%</td>
1505 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=genbank&amp;log$=nuclalign">Subject_2</a></td> 1505 <td><a href="http://example.com/example-genebank?id=Subject_2">Subject_2</a></td>
1506 </tr> 1506 </tr>
1507 </table> 1507 </table>
1508 1508
1509 </div></div> 1509 </div></div>
1510 </section> 1510 </section>
1517 <div class=grey><div class=white> 1517 <div class=grey><div class=white>
1518 <div class=alignment id=hit18-1> 1518 <div class=alignment id=hit18-1>
1519 1519
1520 <div class=linkheader> 1520 <div class=linkheader>
1521 <div class=right><a href="#description18-1">Descriptions</a></div> 1521 <div class=right><a href="#description18-1">Descriptions</a></div>
1522 <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=genbank&amp;log$=nuclalign">Gene Bank</a> 1522 <a class="linkheader" href="http://example.com/example-genebank?id=Subject_2">Gene Bank</a>
1523 </div> 1523 </div>
1524 1524
1525 <div class=title> 1525 <div class=title>
1526 <p class=hittitle>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000</p> 1526 <p class=hittitle>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000</p>
1527 <p class=titleinfo> 1527 <p class=titleinfo>
1528 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=genbank&amp;log$=nuclalign">Subject_2</a> 1528 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_2">Subject_2</a>
1529 <span class=b>Length:</span> 1045 1529 <span class=b>Length:</span> 1045
1530 <span class=b>Number of Matches:</span> 1 1530 <span class=b>Number of Matches:</span> 1
1531 </p> 1531 </p>
1532 </div> 1532 </div>
1533 1533
1684 <td>37.4</td> 1684 <td>37.4</td>
1685 <td>37.4</td> 1685 <td>37.4</td>
1686 <td>100%</td> 1686 <td>100%</td>
1687 <td>7.011e-08</td> 1687 <td>7.011e-08</td>
1688 <td>100%</td> 1688 <td>100%</td>
1689 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&amp;log$=nuclalign">Subject_3</a></td> 1689 <td><a href="http://example.com/example-genebank?id=Subject_3">Subject_3</a></td>
1690 </tr> 1690 </tr>
1691 </table> 1691 </table>
1692 1692
1693 </div></div> 1693 </div></div>
1694 </section> 1694 </section>
1701 <div class=grey><div class=white> 1701 <div class=grey><div class=white>
1702 <div class=alignment id=hit19-1> 1702 <div class=alignment id=hit19-1>
1703 1703
1704 <div class=linkheader> 1704 <div class=linkheader>
1705 <div class=right><a href="#description19-1">Descriptions</a></div> 1705 <div class=right><a href="#description19-1">Descriptions</a></div>
1706 <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&amp;log$=nuclalign">Gene Bank</a> 1706 <a class="linkheader" href="http://example.com/example-genebank?id=Subject_3">Gene Bank</a>
1707 </div> 1707 </div>
1708 1708
1709 <div class=title> 1709 <div class=title>
1710 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p> 1710 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
1711 <p class=titleinfo> 1711 <p class=titleinfo>
1712 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&amp;log$=nuclalign">Subject_3</a> 1712 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_3">Subject_3</a>
1713 <span class=b>Length:</span> 323 1713 <span class=b>Length:</span> 323
1714 <span class=b>Number of Matches:</span> 1 1714 <span class=b>Number of Matches:</span> 1
1715 </p> 1715 </p>
1716 </div> 1716 </div>
1717 1717
1920 <td>37.4</td> 1920 <td>37.4</td>
1921 <td>37.4</td> 1921 <td>37.4</td>
1922 <td>100%</td> 1922 <td>100%</td>
1923 <td>7.011e-08</td> 1923 <td>7.011e-08</td>
1924 <td>100%</td> 1924 <td>100%</td>
1925 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&amp;log$=nuclalign">Subject_6</a></td> 1925 <td><a href="http://example.com/example-genebank?id=Subject_6">Subject_6</a></td>
1926 </tr> 1926 </tr>
1927 </table> 1927 </table>
1928 1928
1929 </div></div> 1929 </div></div>
1930 </section> 1930 </section>
1937 <div class=grey><div class=white> 1937 <div class=grey><div class=white>
1938 <div class=alignment id=hit22-1> 1938 <div class=alignment id=hit22-1>
1939 1939
1940 <div class=linkheader> 1940 <div class=linkheader>
1941 <div class=right><a href="#description22-1">Descriptions</a></div> 1941 <div class=right><a href="#description22-1">Descriptions</a></div>
1942 <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&amp;log$=nuclalign">Gene Bank</a> 1942 <a class="linkheader" href="http://example.com/example-genebank?id=Subject_6">Gene Bank</a>
1943 </div> 1943 </div>
1944 1944
1945 <div class=title> 1945 <div class=title>
1946 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p> 1946 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
1947 <p class=titleinfo> 1947 <p class=titleinfo>
1948 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&amp;log$=nuclalign">Subject_6</a> 1948 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_6">Subject_6</a>
1949 <span class=b>Length:</span> 2457 1949 <span class=b>Length:</span> 2457
1950 <span class=b>Number of Matches:</span> 1 1950 <span class=b>Number of Matches:</span> 1
1951 </p> 1951 </p>
1952 </div> 1952 </div>
1953 1953
2725 <td>37.4</td> 2725 <td>37.4</td>
2726 <td>37.4</td> 2726 <td>37.4</td>
2727 <td>100%</td> 2727 <td>100%</td>
2728 <td>9.338e-08</td> 2728 <td>9.338e-08</td>
2729 <td>92%</td> 2729 <td>92%</td>
2730 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&amp;log$=nuclalign">Subject_7</a></td> 2730 <td><a href="http://example.com/example-genebank?id=Subject_7">Subject_7</a></td>
2731 </tr> 2731 </tr>
2732 </table> 2732 </table>
2733 2733
2734 </div></div> 2734 </div></div>
2735 </section> 2735 </section>
2742 <div class=grey><div class=white> 2742 <div class=grey><div class=white>
2743 <div class=alignment id=hit47-1> 2743 <div class=alignment id=hit47-1>
2744 2744
2745 <div class=linkheader> 2745 <div class=linkheader>
2746 <div class=right><a href="#description47-1">Descriptions</a></div> 2746 <div class=right><a href="#description47-1">Descriptions</a></div>
2747 <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&amp;log$=nuclalign">Gene Bank</a> 2747 <a class="linkheader" href="http://example.com/example-genebank?id=Subject_7">Gene Bank</a>
2748 </div> 2748 </div>
2749 2749
2750 <div class=title> 2750 <div class=title>
2751 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p> 2751 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
2752 <p class=titleinfo> 2752 <p class=titleinfo>
2753 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&amp;log$=nuclalign">Subject_7</a> 2753 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_7">Subject_7</a>
2754 <span class=b>Length:</span> 4180 2754 <span class=b>Length:</span> 4180
2755 <span class=b>Number of Matches:</span> 1 2755 <span class=b>Number of Matches:</span> 1
2756 </p> 2756 </p>
2757 </div> 2757 </div>
2758 2758
2906 <td>37.4</td> 2906 <td>37.4</td>
2907 <td>37.4</td> 2907 <td>37.4</td>
2908 <td>100%</td> 2908 <td>100%</td>
2909 <td>9.338e-08</td> 2909 <td>9.338e-08</td>
2910 <td>92%</td> 2910 <td>92%</td>
2911 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&amp;log$=nuclalign">Subject_8</a></td> 2911 <td><a href="http://example.com/example-genebank?id=Subject_8">Subject_8</a></td>
2912 </tr> 2912 </tr>
2913 </table> 2913 </table>
2914 2914
2915 </div></div> 2915 </div></div>
2916 </section> 2916 </section>
2923 <div class=grey><div class=white> 2923 <div class=grey><div class=white>
2924 <div class=alignment id=hit48-1> 2924 <div class=alignment id=hit48-1>
2925 2925
2926 <div class=linkheader> 2926 <div class=linkheader>
2927 <div class=right><a href="#description48-1">Descriptions</a></div> 2927 <div class=right><a href="#description48-1">Descriptions</a></div>
2928 <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&amp;log$=nuclalign">Gene Bank</a> 2928 <a class="linkheader" href="http://example.com/example-genebank?id=Subject_8">Gene Bank</a>
2929 </div> 2929 </div>
2930 2930
2931 <div class=title> 2931 <div class=title>
2932 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p> 2932 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
2933 <p class=titleinfo> 2933 <p class=titleinfo>
2934 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&amp;log$=nuclalign">Subject_8</a> 2934 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_8">Subject_8</a>
2935 <span class=b>Length:</span> 4983 2935 <span class=b>Length:</span> 4983
2936 <span class=b>Number of Matches:</span> 1 2936 <span class=b>Number of Matches:</span> 1
2937 </p> 2937 </p>
2938 </div> 2938 </div>
2939 2939
3247 <td>89.7</td> 3247 <td>89.7</td>
3248 <td>89.7</td> 3248 <td>89.7</td>
3249 <td>100%</td> 3249 <td>100%</td>
3250 <td>6.629e-23</td> 3250 <td>6.629e-23</td>
3251 <td>86%</td> 3251 <td>86%</td>
3252 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&amp;log$=nuclalign">Subject_7</a></td> 3252 <td><a href="http://example.com/example-genebank?id=Subject_7">Subject_7</a></td>
3253 </tr> 3253 </tr>
3254 </table> 3254 </table>
3255 3255
3256 </div></div> 3256 </div></div>
3257 </section> 3257 </section>
3264 <div class=grey><div class=white> 3264 <div class=grey><div class=white>
3265 <div class=alignment id=hit55-1> 3265 <div class=alignment id=hit55-1>
3266 3266
3267 <div class=linkheader> 3267 <div class=linkheader>
3268 <div class=right><a href="#description55-1">Descriptions</a></div> 3268 <div class=right><a href="#description55-1">Descriptions</a></div>
3269 <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&amp;log$=nuclalign">Gene Bank</a> 3269 <a class="linkheader" href="http://example.com/example-genebank?id=Subject_7">Gene Bank</a>
3270 </div> 3270 </div>
3271 3271
3272 <div class=title> 3272 <div class=title>
3273 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p> 3273 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
3274 <p class=titleinfo> 3274 <p class=titleinfo>
3275 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&amp;log$=nuclalign">Subject_7</a> 3275 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_7">Subject_7</a>
3276 <span class=b>Length:</span> 4180 3276 <span class=b>Length:</span> 4180
3277 <span class=b>Number of Matches:</span> 1 3277 <span class=b>Number of Matches:</span> 1
3278 </p> 3278 </p>
3279 </div> 3279 </div>
3280 3280
3435 <td>89.7</td> 3435 <td>89.7</td>
3436 <td>89.7</td> 3436 <td>89.7</td>
3437 <td>100%</td> 3437 <td>100%</td>
3438 <td>6.629e-23</td> 3438 <td>6.629e-23</td>
3439 <td>86%</td> 3439 <td>86%</td>
3440 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&amp;log$=nuclalign">Subject_8</a></td> 3440 <td><a href="http://example.com/example-genebank?id=Subject_8">Subject_8</a></td>
3441 </tr> 3441 </tr>
3442 </table> 3442 </table>
3443 3443
3444 </div></div> 3444 </div></div>
3445 </section> 3445 </section>
3452 <div class=grey><div class=white> 3452 <div class=grey><div class=white>
3453 <div class=alignment id=hit56-1> 3453 <div class=alignment id=hit56-1>
3454 3454
3455 <div class=linkheader> 3455 <div class=linkheader>
3456 <div class=right><a href="#description56-1">Descriptions</a></div> 3456 <div class=right><a href="#description56-1">Descriptions</a></div>
3457 <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&amp;log$=nuclalign">Gene Bank</a> 3457 <a class="linkheader" href="http://example.com/example-genebank?id=Subject_8">Gene Bank</a>
3458 </div> 3458 </div>
3459 3459
3460 <div class=title> 3460 <div class=title>
3461 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p> 3461 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
3462 <p class=titleinfo> 3462 <p class=titleinfo>
3463 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&amp;log$=nuclalign">Subject_8</a> 3463 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_8">Subject_8</a>
3464 <span class=b>Length:</span> 4983 3464 <span class=b>Length:</span> 4983
3465 <span class=b>Number of Matches:</span> 1 3465 <span class=b>Number of Matches:</span> 1
3466 </p> 3466 </p>
3467 </div> 3467 </div>
3468 3468