|
3
|
1 // JScript source code
|
|
|
2
|
|
|
3 //Display Reformat page button only after the whole page is loaded
|
|
|
4
|
|
|
5 function ReformatPageEvent()
|
|
|
6 {
|
|
|
7 var refPageLink = document.getElementById("refPage");
|
|
|
8
|
|
|
9 //alert(refPageLink);
|
|
|
10 //alert(refPageLink.getAttribute("submitForm"));
|
|
|
11 var submitForm = refPageLink.getAttribute("submitForm");
|
|
|
12 alert(submitForm);
|
|
|
13 if(refPageLink && submitForm) {
|
|
|
14 utils.addEvent(refPageLink,
|
|
|
15 "click",
|
|
|
16 function() {
|
|
|
17 document.getElementById(submitForm).submit();
|
|
|
18 },
|
|
|
19 false);
|
|
|
20 }
|
|
|
21 }
|
|
|
22
|
|
|
23
|
|
|
24 function SubmitEvent(linkID)
|
|
|
25 {
|
|
|
26
|
|
|
27 var link = document.getElementById(linkID);
|
|
|
28 //alert(link.getAttribute("submitForm"));
|
|
|
29 var submitForm = link.getAttribute("submitForm");
|
|
|
30 if(link && submitForm) {
|
|
|
31 utils.addEvent(link,
|
|
|
32 "click",
|
|
|
33 function() {
|
|
|
34 document.getElementById(submitForm).submit();
|
|
|
35 },
|
|
|
36 false);
|
|
|
37 }
|
|
|
38 }
|
|
|
39
|
|
|
40
|
|
|
41 function SubmitEventSave(linkID)
|
|
|
42 {
|
|
|
43
|
|
|
44 var link = document.getElementById(linkID);
|
|
|
45 //alert(link.getAttribute("submitForm"));
|
|
|
46 var submitForm = link.getAttribute("submitForm");
|
|
|
47 if(link && submitForm) {
|
|
|
48 utils.addEvent(link,
|
|
|
49 "click",
|
|
|
50 function() {
|
|
|
51 //$(submitForm).CMD.value = "GetSaved";
|
|
|
52 document.getElementById(submitForm).submit();
|
|
|
53 },
|
|
|
54 false);
|
|
|
55 }
|
|
|
56 }
|
|
|
57
|
|
|
58
|
|
|
59
|
|
|
60
|
|
|
61 //This function creates submit form event on click
|
|
|
62 //form submitted is defined in submitForm attribute
|
|
|
63 //It also copies params from forms[0] (search paramateres) created by formatter
|
|
|
64 function SubmitEventNew(linkID)
|
|
|
65 {
|
|
|
66
|
|
|
67 var link = document.getElementById(linkID);
|
|
|
68 //alert(link.getAttribute("submitForm"));
|
|
|
69 if(!link) return;
|
|
|
70 var submitForm = link.getAttribute("submitForm");
|
|
|
71 if(link && submitForm) {
|
|
|
72 utils.addEvent(link,
|
|
|
73 "click",
|
|
|
74 function() {
|
|
|
75 document.forms[0].CMD.value = "";
|
|
|
76 if(document.forms[0].PAGE_TYPE) {
|
|
|
77 document.forms[0].PAGE_TYPE.value = "";
|
|
|
78 }
|
|
|
79 var s = document.forms[0].innerHTML;
|
|
|
80 var form = $(submitForm);
|
|
|
81 form.innerHTML = s + form.innerHTML;
|
|
|
82 form.submit();
|
|
|
83 },
|
|
|
84 false);
|
|
|
85 }
|
|
|
86 }
|
|
|
87
|
|
|
88 function GetResults()
|
|
|
89 {
|
|
|
90 form = $("results");
|
|
|
91 form.QUERY_INDEX.value = $("queryList")[$("queryList").selectedIndex].value;
|
|
|
92 form.submit();
|
|
|
93 }
|
|
|
94
|
|
|
95 function isIdIn(id, idArray){
|
|
|
96 var idSeen=false;
|
|
|
97
|
|
|
98 for(i=0; i<idArray.length; i++){
|
|
|
99 if(id==idArray[i]){
|
|
|
100 idSeen=true;
|
|
|
101 break;
|
|
|
102 }
|
|
|
103 }
|
|
|
104 return idSeen;
|
|
|
105 }
|
|
|
106
|
|
|
107 function GetSelectedSeqString(formName)
|
|
|
108 {
|
|
|
109 var selSeqs = "";
|
|
|
110 var idArray=new Array();
|
|
|
111 forms = document.getElementsByName(formName);
|
|
|
112 for(var j=0; j < forms.length; j++){
|
|
|
113 for(var i=0; i < forms[j].elements.length; i++){
|
|
|
114 var theElem=forms[j].elements[i];
|
|
|
115 if(theElem.type=="checkbox"&&theElem.name=="getSeqGi"&&theElem.checked){
|
|
|
116 if(!isIdIn(theElem.value, idArray)){
|
|
|
117 idArray[idArray.length]=theElem.value;
|
|
|
118 }
|
|
|
119 }
|
|
|
120 }
|
|
|
121 }
|
|
|
122 selSeqs = idArray.join();
|
|
|
123 return selSeqs;
|
|
|
124 }
|
|
|
125
|
|
|
126 function ViewSelectedSeqs(e)
|
|
|
127 {
|
|
|
128 var submitForm = $("submitterTop");
|
|
|
129 var targetForm = submitForm.getAttribute("seqsForm");
|
|
|
130 $("selSeqs").value = GetSelectedSeqString(targetForm);
|
|
|
131 submitForm.submit();
|
|
|
132 utils.preventDefault(e);
|
|
|
133 }
|
|
|
134
|
|
|
135
|
|
|
136 function ViewSelectedSeqTree()
|
|
|
137 {
|
|
|
138 var submitForm = $("treesubmitterTop");
|
|
|
139 var targetForm = submitForm.getAttribute("seqsForm");
|
|
|
140 $("seqSet").value = GetSelectedSeqString(targetForm);
|
|
|
141 $("scrWidth").value = screen.width;
|
|
|
142 $("scrHeight").value = screen.height;
|
|
|
143 submitForm.submit();
|
|
|
144 }
|
|
|
145
|
|
|
146 function ViewTree(linkID) {
|
|
|
147 link = document.getElementById(linkID);
|
|
|
148 var target = link.target;
|
|
|
149 winRef = window.open(link.href + "&screenWidth=" + screen.width + "&screenHeight=" + screen.height, target);
|
|
|
150 }
|
|
|
151
|
|
|
152 function ViewSelectedSeqMultiAlign()
|
|
|
153 {
|
|
|
154 var submitForm = $("multisubmitterTop");
|
|
|
155 var targetForm = submitForm.getAttribute("seqsForm");
|
|
|
156 $("seqSetM").value = GetSelectedSeqString(targetForm);
|
|
|
157 submitForm.submit();
|
|
|
158 }
|
|
|
159
|
|
|
160
|
|
|
161
|
|
|
162 function selectAllSeqs()
|
|
|
163 {
|
|
|
164 var formName = this.getAttribute("seqsForm");
|
|
|
165 forms = document.getElementsByName(formName);
|
|
|
166 for(var j=0; j < forms.length; j++){
|
|
|
167 for(var i=0; i < forms[j].elements.length; i++){
|
|
|
168 //for(var i=0; i < document.forms[formName].elements.length; i++){
|
|
|
169 var theElem=forms[j].elements[i];
|
|
|
170 if(theElem.type=="checkbox"&&theElem.name=="getSeqGi"){
|
|
|
171 theElem.checked=this.checked;
|
|
|
172 }
|
|
|
173 }
|
|
|
174 }
|
|
|
175 links = document.getElementsByName("selectAll");
|
|
|
176 for(var i=0; i < links.length;i++) {
|
|
|
177 if(links[i] != this) links[i].checked = this.checked;
|
|
|
178 }
|
|
|
179 }
|
|
|
180
|
|
|
181
|
|
|
182 function InitSeqAlignLinks()
|
|
|
183 {
|
|
|
184 var links = document.getElementsByName("getSeqs");
|
|
|
185 for(var i=0; i < links.length;i++) {
|
|
|
186 utils.addEvent(links[i],"click",ViewSelectedSeqs,false);
|
|
|
187 }
|
|
|
188 links = document.getElementsByName("treeView");
|
|
|
189 for(var i=0; i < links.length;i++) {
|
|
|
190 utils.addEvent(links[i],"click",ViewSelectedSeqTree,false);
|
|
|
191 }
|
|
|
192 links = document.getElementsByName("mltiAln");
|
|
|
193 for(var i=0; i < links.length;i++) {
|
|
|
194 utils.addEvent(links[i],"click",ViewSelectedSeqMultiAlign,false);
|
|
|
195 }
|
|
|
196 links = document.getElementsByName("selectAll");
|
|
|
197 for(var i=0; i < links.length;i++) {
|
|
|
198 utils.addEvent(links[i],"click",selectAllSeqs,false);
|
|
|
199 }
|
|
|
200
|
|
|
201 if($("showAlign"))
|
|
|
202 utils.addEvent($("showAlign"),"click",showHideLinks,false);
|
|
|
203 }
|
|
|
204
|
|
|
205 function InitDownLoad()
|
|
|
206 {
|
|
|
207 var deltaBlast = ($("diThresh") && $("diThresh").value != "") ? true : false;
|
|
|
208 if (!deltaBlast && ($("stepNumber").value == "" || $("stepNumber").value < 2)) {
|
|
|
209 utils.addClass($("dnPSSMPar"),"hidden");
|
|
|
210 }
|
|
|
211 }
|
|
|
212 function Reformat()
|
|
|
213 {
|
|
|
214 if(utils.hasClass($("FormatForm").FORMAT_ORGANISM,"orgHint")) $("FormatForm").FORMAT_ORGANISM.value = "";
|
|
|
215
|
|
|
216 $("FormatForm").submit();
|
|
|
217 }
|
|
|
218 function InitCustomButton(bn)
|
|
|
219 {
|
|
|
220 utils.addEvent(bn, "mouseover", function() {this.src = this.getAttribute("mouseovImg");}, false);
|
|
|
221 utils.addEvent(bn, "mouseout", function() {this.src = this.getAttribute("mouseoutImg");}, false);
|
|
|
222 utils.addEvent(bn, "mousedown", function() {this.src = this.getAttribute("mousedownImg");}, false);
|
|
|
223 utils.addEvent(bn, "mouseup", function() {this.src = this.getAttribute("mouseupImg");}, false);
|
|
|
224 }
|
|
|
225
|
|
|
226 function InitAllCustomButtons()
|
|
|
227 {
|
|
|
228 if($("go")) InitCustomButton($("go"));
|
|
|
229 if($("dn")) InitCustomButton($("dn"));
|
|
|
230 if($("onPageReformat")) InitCustomButton($("onPageReformat"));
|
|
|
231 }
|
|
|
232 function showHideLinks()
|
|
|
233 {
|
|
|
234 var links = document.getElementsByName("selectAll");
|
|
|
235 for(var i=0; i < links.length;i++) {
|
|
|
236 //This is done since IE does not recognize getElementsByName for span elem
|
|
|
237 var allLinks = utils.getParent(links[i]);
|
|
|
238 var removeClass,addClass;
|
|
|
239 if(utils.hasClass(allLinks,"shownInl")) {
|
|
|
240 removeClass="shownInl";
|
|
|
241 addClass="hidden";
|
|
|
242 }
|
|
|
243 else {
|
|
|
244 removeClass="hidden";
|
|
|
245 addClass="shownInl";
|
|
|
246 }
|
|
|
247 utils.removeClass(allLinks,removeClass);
|
|
|
248 utils.addClass(allLinks,addClass);
|
|
|
249 }
|
|
|
250 }
|
|
|
251 /*remove this function */
|
|
|
252 function InitHelpLinks()
|
|
|
253 {
|
|
|
254 for(var i=1; i <= 11;i++) {
|
|
|
255 InitToggleEvent($("hlp" + i));
|
|
|
256 }
|
|
|
257 }
|
|
|
258 //This function is used for collapsible deflines onmouseover="showInfo(this)"
|
|
|
259 //Initialized in showdefline.cpp
|
|
|
260 function showInfo(elem)
|
|
|
261 {
|
|
|
262 var targetElem = $("info_" + elem.id);
|
|
|
263 if(!targetElem) return;
|
|
|
264 if(elem.getAttribute("init") == "on") return;
|
|
|
265
|
|
|
266 Toggle.addTarget(elem, targetElem);
|
|
|
267 elem.setAttribute("init","on");
|
|
|
268 }
|
|
|
269
|
|
|
270 function InitPsiBlast()
|
|
|
271 {
|
|
|
272 //utils.addEvent($("ttt"),"keyup",SetHitlistSize,false);
|
|
|
273 var hts = document.getElementsByName("HITLIST_SIZE");
|
|
|
274 for(var i=0; i < hts.length;i++) {
|
|
|
275 utils.addEvent(hts[i],"keyup",SetHitlistSize,false);
|
|
|
276 }
|
|
|
277 if($("psiInp")) {
|
|
|
278 var numSubsets = $("psiInp").getAttribute("numSubsets");
|
|
|
279 for(var i=1; i <= numSubsets;i++) {
|
|
|
280 if ($("alnPos" + i)) InitToggleEvent($("alnPos" + i));
|
|
|
281 if ($("deflnG" + i)) InitToggleEvent($("deflnG" + i));
|
|
|
282 if ($("deflnB" + i)) InitToggleEvent($("deflnB" + i));
|
|
|
283 }
|
|
|
284 }
|
|
|
285 }
|
|
|
286
|
|
|
287 function SetHitlistSize()
|
|
|
288 {
|
|
|
289 var hts = document.getElementsByName("HITLIST_SIZE");
|
|
|
290 for(var i=0; i < hts.length;i++) {
|
|
|
291 if(this != hts[i]) {
|
|
|
292 hts[i].value = this.value;
|
|
|
293 }
|
|
|
294 }
|
|
|
295 }
|
|
|
296 function InitToggleEvent(toggleNode)
|
|
|
297 {
|
|
|
298 if(toggleNode) {
|
|
|
299 var srcid = toggleNode.getAttribute("toggle");
|
|
|
300 if(srcid) Toggle.addTarget(srcid, toggleNode);
|
|
|
301 }
|
|
|
302 }
|
|
|
303
|
|
|
304 function InitIFrameLinks()
|
|
|
305 {
|
|
|
306 CheckIframe($("RSIFrameNoRes"),"prlink");
|
|
|
307 CheckIframe($("RSIFrameDesc"),"prlink");
|
|
|
308 CheckIframe($("RSIFrameAln"),"prlink");
|
|
|
309 }
|
|
|
310
|
|
|
311 function CheckIframe(iframe,contentElemID)
|
|
|
312 {
|
|
|
313 if(!iframe) return;
|
|
|
314
|
|
|
315 var iframeDoc;
|
|
|
316
|
|
|
317 if(iframe.contentDocument) {//Firefox
|
|
|
318 iframeDoc = iframe.contentDocument;
|
|
|
319 }
|
|
|
320 else if (iframe.contentWindow) {//IE
|
|
|
321 iframeDoc = iframe.contentWindow.document;
|
|
|
322 }
|
|
|
323 else if(iframe.document) {
|
|
|
324 iframeDoc = iframe.document;
|
|
|
325 }
|
|
|
326 if(iframeDoc){
|
|
|
327 if(iframeDoc.getElementById(contentElemID)) {
|
|
|
328 utils.addClass(iframe,"shown");
|
|
|
329 utils.removeClass(iframe,"hidden");
|
|
|
330 }
|
|
|
331 }
|
|
|
332 }
|
|
|
333
|
|
|
334
|
|
|
335 function InitHitMatrix()
|
|
|
336 {
|
|
|
337 if($("bl2seImg")) {
|
|
|
338
|
|
|
339 utils.addEvent($("hitmtImg"),"load",
|
|
|
340 function() {
|
|
|
341 utils.addClass($("bl2seImg"),"shown");
|
|
|
342 utils.removeClass($("bl2seImg"),"hidden");
|
|
|
343
|
|
|
344 },
|
|
|
345 false);
|
|
|
346 utils.addEvent($("showHitMatrix"),"click",
|
|
|
347 function() {
|
|
|
348 $("hitmtImg").src= $("hitmtImg").getAttribute("imgsrc");
|
|
|
349 if(utils.hasClass($("htmb"),"shown")) {
|
|
|
350 utils.addClass($("htmb"),"hidden");
|
|
|
351 utils.removeClass($("htmb"),"shown");
|
|
|
352 }
|
|
|
353 else {
|
|
|
354 utils.addClass($("htmb"),"shown");
|
|
|
355 utils.removeClass($("htmb"),"hidden");
|
|
|
356 }
|
|
|
357 },
|
|
|
358 false);
|
|
|
359
|
|
|
360 if($("blastSpec") && $("blastSpec").value=="GlobalAln") {
|
|
|
361 $("hitmtImg").src= $("hitmtImg").getAttribute("imgsrc");
|
|
|
362 }
|
|
|
363 }
|
|
|
364 }
|
|
|
365
|
|
|
366
|
|
|
367
|
|
|
368
|
|
|
369
|
|
|
370 function SetFormSubmitEvent()
|
|
|
371 {
|
|
|
372 var el = $("refPage");
|
|
|
373 if(el) {
|
|
|
374 SubmitEventNew("refPage");
|
|
|
375 }
|
|
|
376 SubmitEventNew("frmPage");
|
|
|
377 el = $("searchOptions");
|
|
|
378 if(el) {
|
|
|
379 SubmitEventNew("searchOptions");
|
|
|
380 }
|
|
|
381 el = $("saveSearchOptions");
|
|
|
382 if(el) {
|
|
|
383 SubmitEventNew("saveSearchOptions");
|
|
|
384 }
|
|
|
385 //SubmitEventNew("breadCrSearchOptions");
|
|
|
386 list = $("queryList");
|
|
|
387 if(list) {
|
|
|
388 utils.addEvent(list,"change",GetResults,false);
|
|
|
389 }
|
|
|
390
|
|
|
391 list = $("go");
|
|
|
392 if(list) {
|
|
|
393 utils.addEvent(list,"click",GetResults,false);
|
|
|
394 }
|
|
|
395
|
|
|
396
|
|
|
397 list= $("onPageReformat");
|
|
|
398 if(list) {
|
|
|
399 utils.addEvent(list,"click",Reformat,false);
|
|
|
400 }
|
|
|
401
|
|
|
402 if ($("cddResults") && $("statInfo")) {
|
|
|
403 jQuery($("cddResults")).ncbitoggler('toggle');
|
|
|
404 }
|
|
|
405 //New design still uses toggle
|
|
|
406 if ($("showCDD")) {
|
|
|
407 InitToggleEvent($("cddInfo"));
|
|
|
408 }
|
|
|
409 InitToggleEvent($("refInfo"));
|
|
|
410 InitToggleEvent($("resStat"));
|
|
|
411 InitToggleEvent($("dbDetails"));
|
|
|
412 InitToggleEvent($("graphicInfo"));
|
|
|
413 InitToggleEvent($("descrInfo"));
|
|
|
414 InitToggleEvent($("alignInfo"));
|
|
|
415 InitToggleEvent($("ovrInfo"));
|
|
|
416 InitToggleEvent($("queryInfo"));
|
|
|
417 InitToggleEvent($("hitMatrixInfo"));
|
|
|
418 InitToggleEvent($("bl2ovrInfo"));
|
|
|
419 //Init only for PSI blastfse
|
|
|
420 if($("prevRID")) InitPsiBlast();
|
|
|
421 InitSeqAlignLinks();
|
|
|
422 InitAllCustomButtons();
|
|
|
423 if($("dnPSSMPar")) InitDownLoad();
|
|
|
424 InitHitMatrix();
|
|
|
425 if($("noRes")) {
|
|
|
426 if($("hitCvs")) utils.addClass($("hitCvs"),"hidden");
|
|
|
427 if($("hitText")) utils.addClass($("hitText"),"hidden");
|
|
|
428 }
|
|
|
429 InitIFrameLinks();
|
|
|
430 showDbDetails(); //fill behind the scene
|
|
|
431 if ($("showDetails") && utils.hasClass($("showDetails"), "shown")) {
|
|
|
432 utils.addEvent($("showDetails"), "click", showDbDetails, false);
|
|
|
433 }
|
|
|
434 initContentWidth();
|
|
|
435 }
|
|
|
436
|
|
|
437 function initContentWidth() {
|
|
|
438 var lineLengthElem = $("FormatForm").LINE_LENGTH;
|
|
|
439 if (lineLengthElem) {
|
|
|
440 var lineLength = parseInt(lineLengthElem[lineLengthElem.selectedIndex].value);
|
|
|
441 if (parseInt(lineLengthElem.getAttribute("defval")) == lineLength) return;
|
|
|
442
|
|
|
443 var charWidth = (navigator.userAgent.match(/ie/i)) ? 8 : 7;
|
|
|
444 var minWidth = (lineLength + parseInt(17)) * charWidth;
|
|
|
445
|
|
|
446
|
|
|
447 var alignView = $("FormatForm").ALIGNMENT_VIEW;
|
|
|
448 var formatType = $("FormatForm").FORMAT_TYPE;
|
|
|
449 var queryAnch = formatType[formatType.selectedIndex].value == "HTML" && (alignView[alignView.selectedIndex].value != "Pairwise" && alignView[alignView.selectedIndex].value != "PairwiseWithIdentities");
|
|
|
450
|
|
|
451 var addWidth = ($("FormatForm").OLD_VIEW.checked || queryAnch) ? 250 : 350;
|
|
|
452
|
|
|
453 minWidth = minWidth + parseInt(addWidth) + "px";
|
|
|
454 jQuery($("content")).css("min-width", minWidth);
|
|
|
455 }
|
|
|
456
|
|
|
457 }
|
|
|
458
|
|
|
459
|
|
|
460
|
|
|
461
|
|
|
462
|
|
|
463 function ShowHideAlnDeflines(alnID, checkbx) {
|
|
|
464 var dflTableID = "dln_" + alnID;
|
|
|
465 if ($(dflTableID)) {
|
|
|
466 var rmClass, addClass;
|
|
|
467 if (checkbx.checked) {
|
|
|
468 rmClass = "hidden";
|
|
|
469 addClass = "shown";
|
|
|
470 }
|
|
|
471 else {
|
|
|
472 rmClass = "shown";
|
|
|
473 addClass = "hidden";
|
|
|
474 }
|
|
|
475 var elems = $C(rmClass, "class", $(dflTableID), "tr");
|
|
|
476 if (elems) {
|
|
|
477 //alert(elems.length);
|
|
|
478 for (var i = 0; i < elems.length; i++) {
|
|
|
479 utils.removeClass(elems[i], rmClass);
|
|
|
480 utils.addClass(elems[i], addClass);
|
|
|
481 }
|
|
|
482 }
|
|
|
483 }
|
|
|
484 }
|
|
|
485
|
|
|
486 function SortAln(e, sortLink, sortItem) {
|
|
|
487 var p = utils.getParent(sortLink);
|
|
|
488 var p = utils.getParent(p);
|
|
|
489 p_TD = utils.getParent(p);
|
|
|
490 p_TR = utils.getParent(p_TD);
|
|
|
491 if (utils.hasClass(p_TR, "dflnAln")) {
|
|
|
492 p_TD.innerHTML = "Reading seqaligns...";
|
|
|
493 var gi = p_TD.id.substr(2);
|
|
|
494 var rid = p_TD.getAttribute("rid");
|
|
|
495 getAlignSort(rid, gi, p_TD, sortItem);
|
|
|
496 e = e || window.event;
|
|
|
497 utils.preventDefault(e);
|
|
|
498 return;
|
|
|
499 }
|
|
|
500 var links = document.getElementsByName("alnSort");
|
|
|
501 if (links.length >= sortItem) {
|
|
|
502 var href = links[sortItem].href.replace(new RegExp("selectAllTop.*(&|$)"), "");
|
|
|
503 var hrefLn = sortLink.href.replace(new RegExp(".*#"), "");
|
|
|
504 sortLink.href = href + hrefLn;
|
|
|
505 }
|
|
|
506 }
|
|
|
507
|
|
|
508
|
|
|
509
|
|
|
510 var fullArr;
|
|
|
511 var numDbs;
|
|
|
512 function showDbDetails(e,dbSetIndex)
|
|
|
513 {
|
|
|
514 if (!($("dbPlusSpecies"))) return; //No org display
|
|
|
515 if ($("dbPlusSpecies").getAttribute("init") == "on" && dbSetIndex == null) return;
|
|
|
516 $("dbPlusSpecies").setAttribute("init", "on");
|
|
|
517
|
|
|
518 dbInfoUrl = "getDBInfo.cgi";
|
|
|
519 var rp = new RemoteDataProvider(dbInfoUrl);
|
|
|
520 rp.minArr = 10;
|
|
|
521
|
|
|
522 if (!fullArr) {
|
|
|
523 var arr = $("results").DATABASE.value.split(" ");
|
|
|
524 numDbs = arr.length;
|
|
|
525 if (arr.length > rp.minArr) {
|
|
|
526 fullArr = new Array();
|
|
|
527 while (arr.length > 1) {
|
|
|
528 var arrNew = arr.splice(0, rp.minArr); //does not include stopindex
|
|
|
529 fullArr.push(arrNew);
|
|
|
530 }
|
|
|
531 if (!dbSetIndex) dbSetIndex = 0;
|
|
|
532 }
|
|
|
533 }
|
|
|
534
|
|
|
535 rp.onSuccess = function(obj) {
|
|
|
536 var navDB = document.createElement("div");
|
|
|
537 if (fullArr) {
|
|
|
538 var prevLink, nextLink, firstLink, lastLink;
|
|
|
539 if (this.currDbSetIndex >= 1) {
|
|
|
540 var firstStart = 1;
|
|
|
541 var firstEnd = firstStart + fullArr[0].length - 1;
|
|
|
542 firstLink = document.createElement("a");
|
|
|
543 jQuery(firstLink).attr("href", "#");
|
|
|
544 jQuery(firstLink).attr("id", "firstDbSet");
|
|
|
545 jQuery(firstLink).attr("onclick", "showDbDetails(event,0);");
|
|
|
546 jQuery(firstLink).attr("title", "Databases " + firstStart + "-" + firstEnd);
|
|
|
547 jQuery(firstLink).html("First " + this.minArr + " dbs");
|
|
|
548
|
|
|
549 }
|
|
|
550 if (this.currDbSetIndex >= 1) {
|
|
|
551 var prevStart = (this.currDbSetIndex - 1) * this.minArr + 1;
|
|
|
552 var prevEnd = prevStart + fullArr[this.currDbSetIndex - 1].length - 1;
|
|
|
553 prevLink = document.createElement("a");
|
|
|
554 jQuery(prevLink).attr("href", "#");
|
|
|
555 jQuery(prevLink).attr("id", "prevDbSet");
|
|
|
556 jQuery(prevLink).attr("onclick", "showDbDetails(event," + (this.currDbSetIndex - 1) + ");");
|
|
|
557 jQuery(prevLink).attr("title", "Databases " + prevStart + "-" + prevEnd);
|
|
|
558 jQuery(prevLink).html("Prev " + this.minArr + " dbs");
|
|
|
559 }
|
|
|
560
|
|
|
561 if (this.currDbSetIndex < fullArr.length - 1) {
|
|
|
562 var nextStart = (this.currDbSetIndex + 1) * this.minArr + 1;
|
|
|
563 var nextEnd = nextStart + fullArr[this.currDbSetIndex + 1].length - 1;
|
|
|
564 nextLink = document.createElement("a");
|
|
|
565 jQuery(nextLink).attr("href", "#");
|
|
|
566 jQuery(nextLink).attr("id", "nextDbSet");
|
|
|
567 jQuery(nextLink).attr("onclick", "showDbDetails(event," + (this.currDbSetIndex + 1) + ");");
|
|
|
568 jQuery(nextLink).attr("title", "Databases " + nextStart + "-" + nextEnd);
|
|
|
569 jQuery(nextLink).html("Next " + this.minArr + " dbs");
|
|
|
570 }
|
|
|
571 if (this.currDbSetIndex < fullArr.length - 1) {
|
|
|
572 var lastInd = fullArr.length - 1;
|
|
|
573 var lastStart = numDbs - fullArr[lastInd].length;
|
|
|
574 var lastEnd = numDbs;
|
|
|
575 lastLink = document.createElement("a");
|
|
|
576 jQuery(lastLink).attr("href", "#");
|
|
|
577 jQuery(lastLink).attr("id", "lastDbSet");
|
|
|
578 jQuery(lastLink).attr("onclick", "showDbDetails(event," + lastInd + ");");
|
|
|
579 jQuery(lastLink).attr("title", "Databases " + lastStart + "-" + lastEnd);
|
|
|
580 jQuery(lastLink).html("Last " + this.minArr + " dbs");
|
|
|
581 }
|
|
|
582
|
|
|
583
|
|
|
584 jQuery(navDB).attr("id", "addDbSet");
|
|
|
585 if (firstLink) jQuery(navDB).append(firstLink);
|
|
|
586 if (prevLink) jQuery(navDB).append(prevLink);
|
|
|
587 if (lastLink) jQuery(navDB).append(lastLink);
|
|
|
588 if (nextLink) jQuery(navDB).append(nextLink);
|
|
|
589 }
|
|
|
590
|
|
|
591 jQuery($("dbPlusSpecies")).html(navDB);
|
|
|
592 jQuery(navDB).after(obj.responseText);
|
|
|
593 if (fullArr) {
|
|
|
594 var cap = jQuery($("dbSpecies")).find("caption");
|
|
|
595 if (cap) {
|
|
|
596 var currStart = (this.currDbSetIndex) * this.minArr + 1;
|
|
|
597 var currEnd = currStart + fullArr[this.currDbSetIndex].length - 1;
|
|
|
598 var capText = cap.html() + "<div class=\"cpAdd\"> Databases " + currStart + "-" + currEnd;
|
|
|
599 cap.html(capText);
|
|
|
600 }
|
|
|
601 }
|
|
|
602 };
|
|
|
603 rp.onError = function(obj) {
|
|
|
604 $("dbPlusSpecies").innerHTML += "error, requests:" + this.iActiveRequests + " status:" + obj.status;
|
|
|
605 }
|
|
|
606 var dbs;
|
|
|
607 if (fullArr) {
|
|
|
608 rp.currDbSetIndex = dbSetIndex;
|
|
|
609 var currArr = fullArr[dbSetIndex];
|
|
|
610 dbs = currArr.join(",");
|
|
|
611 }
|
|
|
612 else {
|
|
|
613 dbs = $("results").DATABASE.value.replace(/ /g, ",");
|
|
|
614 }
|
|
|
615
|
|
|
616 rp.Request("CMD=getDBOrg&DATABASE=" + dbs, "POST");
|
|
|
617 if(e) utils.preventDefault(e);
|
|
|
618 }
|
|
|
619
|
|
|
620 function synchronizeCheck(id, formName, inputName, isChecked) {
|
|
|
621
|
|
|
622 for (var i = 0; i < document.forms[formName].elements.length; i++) {
|
|
|
623 var theElem = document.forms[formName].elements[i];
|
|
|
624 if (theElem.type == "checkbox" && theElem.name == inputName && id == theElem.value) {
|
|
|
625 theElem.checked = isChecked;
|
|
|
626
|
|
|
627 }
|
|
|
628 }
|
|
|
629
|
|
|
630 }
|
|
|
631
|
|
|
632 utils.addEvent(window,
|
|
|
633 "load", SetFormSubmitEvent,
|
|
|
634 false);
|
|
|
635
|
|
|
636
|
|
|
637 /* If user agent has "safari" in it, include safari-specific stylesheet. */
|
|
|
638 if (navigator.userAgent.match(/safari/i) || navigator.userAgent.match(/opera/i)) {
|
|
|
639 document.write("<link rel='stylesheet' type='text/css' href='css/safari-descriptions.css' media='screen'/>");
|
|
|
640 }
|
|
|
641 if (navigator.userAgent.match(/opera/i)) {
|
|
|
642 document.write("<link rel='stylesheet' type='text/css' href='css/opera-descriptions.css' media='screen'/>");
|
|
|
643 }
|
|
|
644 if (navigator.userAgent.match(/firefox/i) || navigator.userAgent.match(/safari/i)) {
|
|
|
645 document.write("<link rel='stylesheet' type='text/css' href='css/firefox-descriptions.css' media='screen'/>");
|
|
|
646 }
|
|
|
647
|
|
|
648
|
|
|
649
|
