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1 <?xml version="1.0"?>
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2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
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3 <BlastOutput>
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4 <BlastOutput_program>blastn</BlastOutput_program>
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5 <BlastOutput_version>BLASTN 2.2.29+</BlastOutput_version>
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6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
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7 <BlastOutput_db>pdb</BlastOutput_db>
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8 <BlastOutput_query-ID>106397</BlastOutput_query-ID>
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9 <BlastOutput_query-def>No definition line</BlastOutput_query-def>
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10 <BlastOutput_query-len>16</BlastOutput_query-len>
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11 <BlastOutput_param>
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12 <Parameters>
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13 <Parameters_expect>1000</Parameters_expect>
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14 <Parameters_sc-match>1</Parameters_sc-match>
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15 <Parameters_sc-mismatch>-3</Parameters_sc-mismatch>
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16 <Parameters_gap-open>5</Parameters_gap-open>
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17 <Parameters_gap-extend>2</Parameters_gap-extend>
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18 <Parameters_filter>F</Parameters_filter>
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19 </Parameters>
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20 </BlastOutput_param>
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21 <BlastOutput_iterations>
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22 <Iteration>
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23 <Iteration_iter-num>1</Iteration_iter-num>
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24 <Iteration_query-ID>106397</Iteration_query-ID>
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25 <Iteration_query-def>No definition line</Iteration_query-def>
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26 <Iteration_query-len>16</Iteration_query-len>
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27 <Iteration_hits>
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28 <Hit>
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29 <Hit_num>1</Hit_num>
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30 <Hit_id>gi|557804730|pdb|3J5K|A</Hit_id>
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31 <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval Post-translocation Complex (post4, 50s Subunit)</Hit_def>
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32 <Hit_accession>3J5K_A</Hit_accession>
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33 <Hit_len>2903</Hit_len>
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34 <Hit_hsps>
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35 <Hsp>
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36 <Hsp_num>1</Hsp_num>
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37 <Hsp_bit-score>32.2105</Hsp_bit-score>
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38 <Hsp_score>16</Hsp_score>
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39 <Hsp_evalue>0.000791334</Hsp_evalue>
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40 <Hsp_query-from>1</Hsp_query-from>
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41 <Hsp_query-to>16</Hsp_query-to>
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42 <Hsp_hit-from>961</Hsp_hit-from>
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43 <Hsp_hit-to>976</Hsp_hit-to>
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44 <Hsp_query-frame>1</Hsp_query-frame>
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45 <Hsp_hit-frame>1</Hsp_hit-frame>
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46 <Hsp_identity>16</Hsp_identity>
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47 <Hsp_positive>16</Hsp_positive>
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48 <Hsp_gaps>0</Hsp_gaps>
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49 <Hsp_align-len>16</Hsp_align-len>
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50 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
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51 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
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52 <Hsp_midline>||||||||||||||||</Hsp_midline>
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53 </Hsp>
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54 <Hsp>
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55 <Hsp_num>2</Hsp_num>
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56 <Hsp_bit-score>16.3517</Hsp_bit-score>
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57 <Hsp_score>8</Hsp_score>
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58 <Hsp_evalue>47.0266</Hsp_evalue>
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59 <Hsp_query-from>5</Hsp_query-from>
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60 <Hsp_query-to>12</Hsp_query-to>
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61 <Hsp_hit-from>2591</Hsp_hit-from>
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62 <Hsp_hit-to>2598</Hsp_hit-to>
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63 <Hsp_query-frame>1</Hsp_query-frame>
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64 <Hsp_hit-frame>1</Hsp_hit-frame>
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65 <Hsp_identity>8</Hsp_identity>
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66 <Hsp_positive>8</Hsp_positive>
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67 <Hsp_gaps>0</Hsp_gaps>
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68 <Hsp_align-len>8</Hsp_align-len>
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69 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
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70 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
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71 <Hsp_midline>||||||||</Hsp_midline>
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72 </Hsp>
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73 <Hsp>
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74 <Hsp_num>3</Hsp_num>
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75 <Hsp_bit-score>14.3694</Hsp_bit-score>
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76 <Hsp_score>7</Hsp_score>
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77 <Hsp_evalue>185.82</Hsp_evalue>
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78 <Hsp_query-from>7</Hsp_query-from>
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79 <Hsp_query-to>13</Hsp_query-to>
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80 <Hsp_hit-from>839</Hsp_hit-from>
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81 <Hsp_hit-to>845</Hsp_hit-to>
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82 <Hsp_query-frame>1</Hsp_query-frame>
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83 <Hsp_hit-frame>1</Hsp_hit-frame>
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84 <Hsp_identity>7</Hsp_identity>
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85 <Hsp_positive>7</Hsp_positive>
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86 <Hsp_gaps>0</Hsp_gaps>
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87 <Hsp_align-len>7</Hsp_align-len>
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88 <Hsp_qseq>TCGTGAA</Hsp_qseq>
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89 <Hsp_hseq>TCGTGAA</Hsp_hseq>
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90 <Hsp_midline>|||||||</Hsp_midline>
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91 </Hsp>
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92 <Hsp>
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93 <Hsp_num>4</Hsp_num>
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94 <Hsp_bit-score>14.3694</Hsp_bit-score>
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95 <Hsp_score>7</Hsp_score>
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96 <Hsp_evalue>185.82</Hsp_evalue>
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97 <Hsp_query-from>9</Hsp_query-from>
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98 <Hsp_query-to>15</Hsp_query-to>
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99 <Hsp_hit-from>2027</Hsp_hit-from>
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100 <Hsp_hit-to>2033</Hsp_hit-to>
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101 <Hsp_query-frame>1</Hsp_query-frame>
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102 <Hsp_hit-frame>1</Hsp_hit-frame>
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103 <Hsp_identity>7</Hsp_identity>
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104 <Hsp_positive>7</Hsp_positive>
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105 <Hsp_gaps>0</Hsp_gaps>
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106 <Hsp_align-len>7</Hsp_align-len>
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107 <Hsp_qseq>GTGAAGA</Hsp_qseq>
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108 <Hsp_hseq>GTGAAGA</Hsp_hseq>
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109 <Hsp_midline>|||||||</Hsp_midline>
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110 </Hsp>
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111 </Hit_hsps>
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112 </Hit>
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113 <Hit>
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114 <Hit_num>2</Hit_num>
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115 <Hit_id>gi|557804675|pdb|3J5I|A</Hit_id>
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116 <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post3b, 50s Subunit)</Hit_def>
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117 <Hit_accession>3J5I_A</Hit_accession>
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118 <Hit_len>2903</Hit_len>
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119 <Hit_hsps>
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120 <Hsp>
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121 <Hsp_num>1</Hsp_num>
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122 <Hsp_bit-score>32.2105</Hsp_bit-score>
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123 <Hsp_score>16</Hsp_score>
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124 <Hsp_evalue>0.000791334</Hsp_evalue>
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125 <Hsp_query-from>1</Hsp_query-from>
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126 <Hsp_query-to>16</Hsp_query-to>
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127 <Hsp_hit-from>961</Hsp_hit-from>
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128 <Hsp_hit-to>976</Hsp_hit-to>
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129 <Hsp_query-frame>1</Hsp_query-frame>
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130 <Hsp_hit-frame>1</Hsp_hit-frame>
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131 <Hsp_identity>16</Hsp_identity>
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132 <Hsp_positive>16</Hsp_positive>
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133 <Hsp_gaps>0</Hsp_gaps>
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134 <Hsp_align-len>16</Hsp_align-len>
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135 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
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136 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
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137 <Hsp_midline>||||||||||||||||</Hsp_midline>
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138 </Hsp>
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139 <Hsp>
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140 <Hsp_num>2</Hsp_num>
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141 <Hsp_bit-score>16.3517</Hsp_bit-score>
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142 <Hsp_score>8</Hsp_score>
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143 <Hsp_evalue>47.0266</Hsp_evalue>
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144 <Hsp_query-from>5</Hsp_query-from>
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145 <Hsp_query-to>12</Hsp_query-to>
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146 <Hsp_hit-from>2591</Hsp_hit-from>
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147 <Hsp_hit-to>2598</Hsp_hit-to>
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148 <Hsp_query-frame>1</Hsp_query-frame>
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149 <Hsp_hit-frame>1</Hsp_hit-frame>
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150 <Hsp_identity>8</Hsp_identity>
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151 <Hsp_positive>8</Hsp_positive>
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152 <Hsp_gaps>0</Hsp_gaps>
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153 <Hsp_align-len>8</Hsp_align-len>
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154 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
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155 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
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156 <Hsp_midline>||||||||</Hsp_midline>
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157 </Hsp>
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158 <Hsp>
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159 <Hsp_num>3</Hsp_num>
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160 <Hsp_bit-score>14.3694</Hsp_bit-score>
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161 <Hsp_score>7</Hsp_score>
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162 <Hsp_evalue>185.82</Hsp_evalue>
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163 <Hsp_query-from>7</Hsp_query-from>
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164 <Hsp_query-to>13</Hsp_query-to>
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165 <Hsp_hit-from>839</Hsp_hit-from>
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166 <Hsp_hit-to>845</Hsp_hit-to>
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167 <Hsp_query-frame>1</Hsp_query-frame>
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168 <Hsp_hit-frame>1</Hsp_hit-frame>
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169 <Hsp_identity>7</Hsp_identity>
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170 <Hsp_positive>7</Hsp_positive>
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171 <Hsp_gaps>0</Hsp_gaps>
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172 <Hsp_align-len>7</Hsp_align-len>
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173 <Hsp_qseq>TCGTGAA</Hsp_qseq>
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174 <Hsp_hseq>TCGTGAA</Hsp_hseq>
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175 <Hsp_midline>|||||||</Hsp_midline>
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176 </Hsp>
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177 <Hsp>
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178 <Hsp_num>4</Hsp_num>
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179 <Hsp_bit-score>14.3694</Hsp_bit-score>
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180 <Hsp_score>7</Hsp_score>
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181 <Hsp_evalue>185.82</Hsp_evalue>
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182 <Hsp_query-from>9</Hsp_query-from>
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183 <Hsp_query-to>15</Hsp_query-to>
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184 <Hsp_hit-from>2027</Hsp_hit-from>
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185 <Hsp_hit-to>2033</Hsp_hit-to>
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186 <Hsp_query-frame>1</Hsp_query-frame>
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187 <Hsp_hit-frame>1</Hsp_hit-frame>
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188 <Hsp_identity>7</Hsp_identity>
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189 <Hsp_positive>7</Hsp_positive>
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190 <Hsp_gaps>0</Hsp_gaps>
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191 <Hsp_align-len>7</Hsp_align-len>
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192 <Hsp_qseq>GTGAAGA</Hsp_qseq>
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193 <Hsp_hseq>GTGAAGA</Hsp_hseq>
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194 <Hsp_midline>|||||||</Hsp_midline>
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195 </Hsp>
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196 </Hit_hsps>
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197 </Hit>
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198 <Hit>
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199 <Hit_num>3</Hit_num>
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200 <Hit_id>gi|557804619|pdb|3J5G|A</Hit_id>
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201 <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post3a, 50s Subunit)</Hit_def>
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202 <Hit_accession>3J5G_A</Hit_accession>
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203 <Hit_len>2903</Hit_len>
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204 <Hit_hsps>
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205 <Hsp>
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206 <Hsp_num>1</Hsp_num>
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207 <Hsp_bit-score>32.2105</Hsp_bit-score>
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208 <Hsp_score>16</Hsp_score>
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209 <Hsp_evalue>0.000791334</Hsp_evalue>
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210 <Hsp_query-from>1</Hsp_query-from>
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211 <Hsp_query-to>16</Hsp_query-to>
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212 <Hsp_hit-from>961</Hsp_hit-from>
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213 <Hsp_hit-to>976</Hsp_hit-to>
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214 <Hsp_query-frame>1</Hsp_query-frame>
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215 <Hsp_hit-frame>1</Hsp_hit-frame>
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216 <Hsp_identity>16</Hsp_identity>
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217 <Hsp_positive>16</Hsp_positive>
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218 <Hsp_gaps>0</Hsp_gaps>
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219 <Hsp_align-len>16</Hsp_align-len>
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220 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
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221 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
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222 <Hsp_midline>||||||||||||||||</Hsp_midline>
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223 </Hsp>
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224 <Hsp>
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225 <Hsp_num>2</Hsp_num>
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226 <Hsp_bit-score>16.3517</Hsp_bit-score>
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227 <Hsp_score>8</Hsp_score>
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228 <Hsp_evalue>47.0266</Hsp_evalue>
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229 <Hsp_query-from>5</Hsp_query-from>
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230 <Hsp_query-to>12</Hsp_query-to>
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231 <Hsp_hit-from>2591</Hsp_hit-from>
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232 <Hsp_hit-to>2598</Hsp_hit-to>
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233 <Hsp_query-frame>1</Hsp_query-frame>
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234 <Hsp_hit-frame>1</Hsp_hit-frame>
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235 <Hsp_identity>8</Hsp_identity>
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236 <Hsp_positive>8</Hsp_positive>
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237 <Hsp_gaps>0</Hsp_gaps>
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238 <Hsp_align-len>8</Hsp_align-len>
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239 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
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240 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
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241 <Hsp_midline>||||||||</Hsp_midline>
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242 </Hsp>
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243 <Hsp>
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244 <Hsp_num>3</Hsp_num>
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245 <Hsp_bit-score>14.3694</Hsp_bit-score>
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246 <Hsp_score>7</Hsp_score>
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247 <Hsp_evalue>185.82</Hsp_evalue>
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248 <Hsp_query-from>7</Hsp_query-from>
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249 <Hsp_query-to>13</Hsp_query-to>
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250 <Hsp_hit-from>839</Hsp_hit-from>
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251 <Hsp_hit-to>845</Hsp_hit-to>
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252 <Hsp_query-frame>1</Hsp_query-frame>
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253 <Hsp_hit-frame>1</Hsp_hit-frame>
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254 <Hsp_identity>7</Hsp_identity>
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255 <Hsp_positive>7</Hsp_positive>
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256 <Hsp_gaps>0</Hsp_gaps>
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257 <Hsp_align-len>7</Hsp_align-len>
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258 <Hsp_qseq>TCGTGAA</Hsp_qseq>
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259 <Hsp_hseq>TCGTGAA</Hsp_hseq>
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260 <Hsp_midline>|||||||</Hsp_midline>
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261 </Hsp>
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262 <Hsp>
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263 <Hsp_num>4</Hsp_num>
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264 <Hsp_bit-score>14.3694</Hsp_bit-score>
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265 <Hsp_score>7</Hsp_score>
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266 <Hsp_evalue>185.82</Hsp_evalue>
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267 <Hsp_query-from>9</Hsp_query-from>
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268 <Hsp_query-to>15</Hsp_query-to>
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269 <Hsp_hit-from>2027</Hsp_hit-from>
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270 <Hsp_hit-to>2033</Hsp_hit-to>
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271 <Hsp_query-frame>1</Hsp_query-frame>
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272 <Hsp_hit-frame>1</Hsp_hit-frame>
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273 <Hsp_identity>7</Hsp_identity>
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274 <Hsp_positive>7</Hsp_positive>
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275 <Hsp_gaps>0</Hsp_gaps>
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276 <Hsp_align-len>7</Hsp_align-len>
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277 <Hsp_qseq>GTGAAGA</Hsp_qseq>
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278 <Hsp_hseq>GTGAAGA</Hsp_hseq>
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279 <Hsp_midline>|||||||</Hsp_midline>
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280 </Hsp>
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281 </Hit_hsps>
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282 </Hit>
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283 <Hit>
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284 <Hit_num>4</Hit_num>
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285 <Hit_id>gi|557804563|pdb|3J5E|A</Hit_id>
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286 <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post2b, 50s Subunit)</Hit_def>
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287 <Hit_accession>3J5E_A</Hit_accession>
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288 <Hit_len>2903</Hit_len>
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289 <Hit_hsps>
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290 <Hsp>
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291 <Hsp_num>1</Hsp_num>
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292 <Hsp_bit-score>32.2105</Hsp_bit-score>
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293 <Hsp_score>16</Hsp_score>
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294 <Hsp_evalue>0.000791334</Hsp_evalue>
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295 <Hsp_query-from>1</Hsp_query-from>
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296 <Hsp_query-to>16</Hsp_query-to>
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297 <Hsp_hit-from>961</Hsp_hit-from>
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298 <Hsp_hit-to>976</Hsp_hit-to>
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|
|
299 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
300 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
301 <Hsp_identity>16</Hsp_identity>
|
|
|
302 <Hsp_positive>16</Hsp_positive>
|
|
|
303 <Hsp_gaps>0</Hsp_gaps>
|
|
|
304 <Hsp_align-len>16</Hsp_align-len>
|
|
|
305 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
|
|
|
306 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
|
|
|
307 <Hsp_midline>||||||||||||||||</Hsp_midline>
|
|
|
308 </Hsp>
|
|
|
309 <Hsp>
|
|
|
310 <Hsp_num>2</Hsp_num>
|
|
|
311 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
312 <Hsp_score>8</Hsp_score>
|
|
|
313 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
314 <Hsp_query-from>5</Hsp_query-from>
|
|
|
315 <Hsp_query-to>12</Hsp_query-to>
|
|
|
316 <Hsp_hit-from>2591</Hsp_hit-from>
|
|
|
317 <Hsp_hit-to>2598</Hsp_hit-to>
|
|
|
318 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
319 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
320 <Hsp_identity>8</Hsp_identity>
|
|
|
321 <Hsp_positive>8</Hsp_positive>
|
|
|
322 <Hsp_gaps>0</Hsp_gaps>
|
|
|
323 <Hsp_align-len>8</Hsp_align-len>
|
|
|
324 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
325 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
326 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
327 </Hsp>
|
|
|
328 <Hsp>
|
|
|
329 <Hsp_num>3</Hsp_num>
|
|
|
330 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
331 <Hsp_score>7</Hsp_score>
|
|
|
332 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
333 <Hsp_query-from>7</Hsp_query-from>
|
|
|
334 <Hsp_query-to>13</Hsp_query-to>
|
|
|
335 <Hsp_hit-from>839</Hsp_hit-from>
|
|
|
336 <Hsp_hit-to>845</Hsp_hit-to>
|
|
|
337 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
338 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
339 <Hsp_identity>7</Hsp_identity>
|
|
|
340 <Hsp_positive>7</Hsp_positive>
|
|
|
341 <Hsp_gaps>0</Hsp_gaps>
|
|
|
342 <Hsp_align-len>7</Hsp_align-len>
|
|
|
343 <Hsp_qseq>TCGTGAA</Hsp_qseq>
|
|
|
344 <Hsp_hseq>TCGTGAA</Hsp_hseq>
|
|
|
345 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
346 </Hsp>
|
|
|
347 <Hsp>
|
|
|
348 <Hsp_num>4</Hsp_num>
|
|
|
349 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
350 <Hsp_score>7</Hsp_score>
|
|
|
351 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
352 <Hsp_query-from>9</Hsp_query-from>
|
|
|
353 <Hsp_query-to>15</Hsp_query-to>
|
|
|
354 <Hsp_hit-from>2027</Hsp_hit-from>
|
|
|
355 <Hsp_hit-to>2033</Hsp_hit-to>
|
|
|
356 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
357 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
358 <Hsp_identity>7</Hsp_identity>
|
|
|
359 <Hsp_positive>7</Hsp_positive>
|
|
|
360 <Hsp_gaps>0</Hsp_gaps>
|
|
|
361 <Hsp_align-len>7</Hsp_align-len>
|
|
|
362 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
363 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
364 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
365 </Hsp>
|
|
|
366 </Hit_hsps>
|
|
|
367 </Hit>
|
|
|
368 <Hit>
|
|
|
369 <Hit_num>5</Hit_num>
|
|
|
370 <Hit_id>gi|557804507|pdb|3J5C|A</Hit_id>
|
|
|
371 <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post2a, 50s Subunit)</Hit_def>
|
|
|
372 <Hit_accession>3J5C_A</Hit_accession>
|
|
|
373 <Hit_len>2903</Hit_len>
|
|
|
374 <Hit_hsps>
|
|
|
375 <Hsp>
|
|
|
376 <Hsp_num>1</Hsp_num>
|
|
|
377 <Hsp_bit-score>32.2105</Hsp_bit-score>
|
|
|
378 <Hsp_score>16</Hsp_score>
|
|
|
379 <Hsp_evalue>0.000791334</Hsp_evalue>
|
|
|
380 <Hsp_query-from>1</Hsp_query-from>
|
|
|
381 <Hsp_query-to>16</Hsp_query-to>
|
|
|
382 <Hsp_hit-from>961</Hsp_hit-from>
|
|
|
383 <Hsp_hit-to>976</Hsp_hit-to>
|
|
|
384 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
385 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
386 <Hsp_identity>16</Hsp_identity>
|
|
|
387 <Hsp_positive>16</Hsp_positive>
|
|
|
388 <Hsp_gaps>0</Hsp_gaps>
|
|
|
389 <Hsp_align-len>16</Hsp_align-len>
|
|
|
390 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
|
|
|
391 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
|
|
|
392 <Hsp_midline>||||||||||||||||</Hsp_midline>
|
|
|
393 </Hsp>
|
|
|
394 <Hsp>
|
|
|
395 <Hsp_num>2</Hsp_num>
|
|
|
396 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
397 <Hsp_score>8</Hsp_score>
|
|
|
398 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
399 <Hsp_query-from>5</Hsp_query-from>
|
|
|
400 <Hsp_query-to>12</Hsp_query-to>
|
|
|
401 <Hsp_hit-from>2591</Hsp_hit-from>
|
|
|
402 <Hsp_hit-to>2598</Hsp_hit-to>
|
|
|
403 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
404 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
405 <Hsp_identity>8</Hsp_identity>
|
|
|
406 <Hsp_positive>8</Hsp_positive>
|
|
|
407 <Hsp_gaps>0</Hsp_gaps>
|
|
|
408 <Hsp_align-len>8</Hsp_align-len>
|
|
|
409 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
410 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
411 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
412 </Hsp>
|
|
|
413 <Hsp>
|
|
|
414 <Hsp_num>3</Hsp_num>
|
|
|
415 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
416 <Hsp_score>7</Hsp_score>
|
|
|
417 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
418 <Hsp_query-from>7</Hsp_query-from>
|
|
|
419 <Hsp_query-to>13</Hsp_query-to>
|
|
|
420 <Hsp_hit-from>839</Hsp_hit-from>
|
|
|
421 <Hsp_hit-to>845</Hsp_hit-to>
|
|
|
422 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
423 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
424 <Hsp_identity>7</Hsp_identity>
|
|
|
425 <Hsp_positive>7</Hsp_positive>
|
|
|
426 <Hsp_gaps>0</Hsp_gaps>
|
|
|
427 <Hsp_align-len>7</Hsp_align-len>
|
|
|
428 <Hsp_qseq>TCGTGAA</Hsp_qseq>
|
|
|
429 <Hsp_hseq>TCGTGAA</Hsp_hseq>
|
|
|
430 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
431 </Hsp>
|
|
|
432 <Hsp>
|
|
|
433 <Hsp_num>4</Hsp_num>
|
|
|
434 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
435 <Hsp_score>7</Hsp_score>
|
|
|
436 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
437 <Hsp_query-from>9</Hsp_query-from>
|
|
|
438 <Hsp_query-to>15</Hsp_query-to>
|
|
|
439 <Hsp_hit-from>2027</Hsp_hit-from>
|
|
|
440 <Hsp_hit-to>2033</Hsp_hit-to>
|
|
|
441 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
442 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
443 <Hsp_identity>7</Hsp_identity>
|
|
|
444 <Hsp_positive>7</Hsp_positive>
|
|
|
445 <Hsp_gaps>0</Hsp_gaps>
|
|
|
446 <Hsp_align-len>7</Hsp_align-len>
|
|
|
447 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
448 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
449 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
450 </Hsp>
|
|
|
451 </Hit_hsps>
|
|
|
452 </Hit>
|
|
|
453 <Hit>
|
|
|
454 <Hit_num>6</Hit_num>
|
|
|
455 <Hit_id>gi|557804451|pdb|3J5A|A</Hit_id>
|
|
|
456 <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Post- Translocation State (post1, 50s Subunit)</Hit_def>
|
|
|
457 <Hit_accession>3J5A_A</Hit_accession>
|
|
|
458 <Hit_len>2903</Hit_len>
|
|
|
459 <Hit_hsps>
|
|
|
460 <Hsp>
|
|
|
461 <Hsp_num>1</Hsp_num>
|
|
|
462 <Hsp_bit-score>32.2105</Hsp_bit-score>
|
|
|
463 <Hsp_score>16</Hsp_score>
|
|
|
464 <Hsp_evalue>0.000791334</Hsp_evalue>
|
|
|
465 <Hsp_query-from>1</Hsp_query-from>
|
|
|
466 <Hsp_query-to>16</Hsp_query-to>
|
|
|
467 <Hsp_hit-from>961</Hsp_hit-from>
|
|
|
468 <Hsp_hit-to>976</Hsp_hit-to>
|
|
|
469 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
470 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
471 <Hsp_identity>16</Hsp_identity>
|
|
|
472 <Hsp_positive>16</Hsp_positive>
|
|
|
473 <Hsp_gaps>0</Hsp_gaps>
|
|
|
474 <Hsp_align-len>16</Hsp_align-len>
|
|
|
475 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
|
|
|
476 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
|
|
|
477 <Hsp_midline>||||||||||||||||</Hsp_midline>
|
|
|
478 </Hsp>
|
|
|
479 <Hsp>
|
|
|
480 <Hsp_num>2</Hsp_num>
|
|
|
481 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
482 <Hsp_score>8</Hsp_score>
|
|
|
483 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
484 <Hsp_query-from>5</Hsp_query-from>
|
|
|
485 <Hsp_query-to>12</Hsp_query-to>
|
|
|
486 <Hsp_hit-from>2591</Hsp_hit-from>
|
|
|
487 <Hsp_hit-to>2598</Hsp_hit-to>
|
|
|
488 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
489 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
490 <Hsp_identity>8</Hsp_identity>
|
|
|
491 <Hsp_positive>8</Hsp_positive>
|
|
|
492 <Hsp_gaps>0</Hsp_gaps>
|
|
|
493 <Hsp_align-len>8</Hsp_align-len>
|
|
|
494 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
495 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
496 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
497 </Hsp>
|
|
|
498 <Hsp>
|
|
|
499 <Hsp_num>3</Hsp_num>
|
|
|
500 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
501 <Hsp_score>7</Hsp_score>
|
|
|
502 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
503 <Hsp_query-from>7</Hsp_query-from>
|
|
|
504 <Hsp_query-to>13</Hsp_query-to>
|
|
|
505 <Hsp_hit-from>839</Hsp_hit-from>
|
|
|
506 <Hsp_hit-to>845</Hsp_hit-to>
|
|
|
507 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
508 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
509 <Hsp_identity>7</Hsp_identity>
|
|
|
510 <Hsp_positive>7</Hsp_positive>
|
|
|
511 <Hsp_gaps>0</Hsp_gaps>
|
|
|
512 <Hsp_align-len>7</Hsp_align-len>
|
|
|
513 <Hsp_qseq>TCGTGAA</Hsp_qseq>
|
|
|
514 <Hsp_hseq>TCGTGAA</Hsp_hseq>
|
|
|
515 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
516 </Hsp>
|
|
|
517 <Hsp>
|
|
|
518 <Hsp_num>4</Hsp_num>
|
|
|
519 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
520 <Hsp_score>7</Hsp_score>
|
|
|
521 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
522 <Hsp_query-from>9</Hsp_query-from>
|
|
|
523 <Hsp_query-to>15</Hsp_query-to>
|
|
|
524 <Hsp_hit-from>2027</Hsp_hit-from>
|
|
|
525 <Hsp_hit-to>2033</Hsp_hit-to>
|
|
|
526 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
527 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
528 <Hsp_identity>7</Hsp_identity>
|
|
|
529 <Hsp_positive>7</Hsp_positive>
|
|
|
530 <Hsp_gaps>0</Hsp_gaps>
|
|
|
531 <Hsp_align-len>7</Hsp_align-len>
|
|
|
532 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
533 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
534 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
535 </Hsp>
|
|
|
536 </Hit_hsps>
|
|
|
537 </Hit>
|
|
|
538 <Hit>
|
|
|
539 <Hit_num>7</Hit_num>
|
|
|
540 <Hit_id>gi|557804395|pdb|3J58|A</Hit_id>
|
|
|
541 <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5b, 50s Subunit)</Hit_def>
|
|
|
542 <Hit_accession>3J58_A</Hit_accession>
|
|
|
543 <Hit_len>2903</Hit_len>
|
|
|
544 <Hit_hsps>
|
|
|
545 <Hsp>
|
|
|
546 <Hsp_num>1</Hsp_num>
|
|
|
547 <Hsp_bit-score>32.2105</Hsp_bit-score>
|
|
|
548 <Hsp_score>16</Hsp_score>
|
|
|
549 <Hsp_evalue>0.000791334</Hsp_evalue>
|
|
|
550 <Hsp_query-from>1</Hsp_query-from>
|
|
|
551 <Hsp_query-to>16</Hsp_query-to>
|
|
|
552 <Hsp_hit-from>961</Hsp_hit-from>
|
|
|
553 <Hsp_hit-to>976</Hsp_hit-to>
|
|
|
554 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
555 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
556 <Hsp_identity>16</Hsp_identity>
|
|
|
557 <Hsp_positive>16</Hsp_positive>
|
|
|
558 <Hsp_gaps>0</Hsp_gaps>
|
|
|
559 <Hsp_align-len>16</Hsp_align-len>
|
|
|
560 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
|
|
|
561 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
|
|
|
562 <Hsp_midline>||||||||||||||||</Hsp_midline>
|
|
|
563 </Hsp>
|
|
|
564 <Hsp>
|
|
|
565 <Hsp_num>2</Hsp_num>
|
|
|
566 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
567 <Hsp_score>8</Hsp_score>
|
|
|
568 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
569 <Hsp_query-from>5</Hsp_query-from>
|
|
|
570 <Hsp_query-to>12</Hsp_query-to>
|
|
|
571 <Hsp_hit-from>2591</Hsp_hit-from>
|
|
|
572 <Hsp_hit-to>2598</Hsp_hit-to>
|
|
|
573 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
574 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
575 <Hsp_identity>8</Hsp_identity>
|
|
|
576 <Hsp_positive>8</Hsp_positive>
|
|
|
577 <Hsp_gaps>0</Hsp_gaps>
|
|
|
578 <Hsp_align-len>8</Hsp_align-len>
|
|
|
579 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
580 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
581 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
582 </Hsp>
|
|
|
583 <Hsp>
|
|
|
584 <Hsp_num>3</Hsp_num>
|
|
|
585 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
586 <Hsp_score>7</Hsp_score>
|
|
|
587 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
588 <Hsp_query-from>7</Hsp_query-from>
|
|
|
589 <Hsp_query-to>13</Hsp_query-to>
|
|
|
590 <Hsp_hit-from>839</Hsp_hit-from>
|
|
|
591 <Hsp_hit-to>845</Hsp_hit-to>
|
|
|
592 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
593 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
594 <Hsp_identity>7</Hsp_identity>
|
|
|
595 <Hsp_positive>7</Hsp_positive>
|
|
|
596 <Hsp_gaps>0</Hsp_gaps>
|
|
|
597 <Hsp_align-len>7</Hsp_align-len>
|
|
|
598 <Hsp_qseq>TCGTGAA</Hsp_qseq>
|
|
|
599 <Hsp_hseq>TCGTGAA</Hsp_hseq>
|
|
|
600 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
601 </Hsp>
|
|
|
602 <Hsp>
|
|
|
603 <Hsp_num>4</Hsp_num>
|
|
|
604 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
605 <Hsp_score>7</Hsp_score>
|
|
|
606 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
607 <Hsp_query-from>9</Hsp_query-from>
|
|
|
608 <Hsp_query-to>15</Hsp_query-to>
|
|
|
609 <Hsp_hit-from>2027</Hsp_hit-from>
|
|
|
610 <Hsp_hit-to>2033</Hsp_hit-to>
|
|
|
611 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
612 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
613 <Hsp_identity>7</Hsp_identity>
|
|
|
614 <Hsp_positive>7</Hsp_positive>
|
|
|
615 <Hsp_gaps>0</Hsp_gaps>
|
|
|
616 <Hsp_align-len>7</Hsp_align-len>
|
|
|
617 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
618 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
619 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
620 </Hsp>
|
|
|
621 </Hit_hsps>
|
|
|
622 </Hit>
|
|
|
623 <Hit>
|
|
|
624 <Hit_num>8</Hit_num>
|
|
|
625 <Hit_id>gi|557804339|pdb|3J56|A</Hit_id>
|
|
|
626 <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5a, 50s Subunit)</Hit_def>
|
|
|
627 <Hit_accession>3J56_A</Hit_accession>
|
|
|
628 <Hit_len>2903</Hit_len>
|
|
|
629 <Hit_hsps>
|
|
|
630 <Hsp>
|
|
|
631 <Hsp_num>1</Hsp_num>
|
|
|
632 <Hsp_bit-score>32.2105</Hsp_bit-score>
|
|
|
633 <Hsp_score>16</Hsp_score>
|
|
|
634 <Hsp_evalue>0.000791334</Hsp_evalue>
|
|
|
635 <Hsp_query-from>1</Hsp_query-from>
|
|
|
636 <Hsp_query-to>16</Hsp_query-to>
|
|
|
637 <Hsp_hit-from>961</Hsp_hit-from>
|
|
|
638 <Hsp_hit-to>976</Hsp_hit-to>
|
|
|
639 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
640 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
641 <Hsp_identity>16</Hsp_identity>
|
|
|
642 <Hsp_positive>16</Hsp_positive>
|
|
|
643 <Hsp_gaps>0</Hsp_gaps>
|
|
|
644 <Hsp_align-len>16</Hsp_align-len>
|
|
|
645 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
|
|
|
646 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
|
|
|
647 <Hsp_midline>||||||||||||||||</Hsp_midline>
|
|
|
648 </Hsp>
|
|
|
649 <Hsp>
|
|
|
650 <Hsp_num>2</Hsp_num>
|
|
|
651 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
652 <Hsp_score>8</Hsp_score>
|
|
|
653 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
654 <Hsp_query-from>5</Hsp_query-from>
|
|
|
655 <Hsp_query-to>12</Hsp_query-to>
|
|
|
656 <Hsp_hit-from>2591</Hsp_hit-from>
|
|
|
657 <Hsp_hit-to>2598</Hsp_hit-to>
|
|
|
658 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
659 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
660 <Hsp_identity>8</Hsp_identity>
|
|
|
661 <Hsp_positive>8</Hsp_positive>
|
|
|
662 <Hsp_gaps>0</Hsp_gaps>
|
|
|
663 <Hsp_align-len>8</Hsp_align-len>
|
|
|
664 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
665 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
666 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
667 </Hsp>
|
|
|
668 <Hsp>
|
|
|
669 <Hsp_num>3</Hsp_num>
|
|
|
670 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
671 <Hsp_score>7</Hsp_score>
|
|
|
672 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
673 <Hsp_query-from>7</Hsp_query-from>
|
|
|
674 <Hsp_query-to>13</Hsp_query-to>
|
|
|
675 <Hsp_hit-from>839</Hsp_hit-from>
|
|
|
676 <Hsp_hit-to>845</Hsp_hit-to>
|
|
|
677 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
678 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
679 <Hsp_identity>7</Hsp_identity>
|
|
|
680 <Hsp_positive>7</Hsp_positive>
|
|
|
681 <Hsp_gaps>0</Hsp_gaps>
|
|
|
682 <Hsp_align-len>7</Hsp_align-len>
|
|
|
683 <Hsp_qseq>TCGTGAA</Hsp_qseq>
|
|
|
684 <Hsp_hseq>TCGTGAA</Hsp_hseq>
|
|
|
685 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
686 </Hsp>
|
|
|
687 <Hsp>
|
|
|
688 <Hsp_num>4</Hsp_num>
|
|
|
689 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
690 <Hsp_score>7</Hsp_score>
|
|
|
691 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
692 <Hsp_query-from>9</Hsp_query-from>
|
|
|
693 <Hsp_query-to>15</Hsp_query-to>
|
|
|
694 <Hsp_hit-from>2027</Hsp_hit-from>
|
|
|
695 <Hsp_hit-to>2033</Hsp_hit-to>
|
|
|
696 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
697 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
698 <Hsp_identity>7</Hsp_identity>
|
|
|
699 <Hsp_positive>7</Hsp_positive>
|
|
|
700 <Hsp_gaps>0</Hsp_gaps>
|
|
|
701 <Hsp_align-len>7</Hsp_align-len>
|
|
|
702 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
703 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
704 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
705 </Hsp>
|
|
|
706 </Hit_hsps>
|
|
|
707 </Hit>
|
|
|
708 <Hit>
|
|
|
709 <Hit_num>9</Hit_num>
|
|
|
710 <Hit_id>gi|557804283|pdb|3J54|A</Hit_id>
|
|
|
711 <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre4, 50s Subunit)</Hit_def>
|
|
|
712 <Hit_accession>3J54_A</Hit_accession>
|
|
|
713 <Hit_len>2903</Hit_len>
|
|
|
714 <Hit_hsps>
|
|
|
715 <Hsp>
|
|
|
716 <Hsp_num>1</Hsp_num>
|
|
|
717 <Hsp_bit-score>32.2105</Hsp_bit-score>
|
|
|
718 <Hsp_score>16</Hsp_score>
|
|
|
719 <Hsp_evalue>0.000791334</Hsp_evalue>
|
|
|
720 <Hsp_query-from>1</Hsp_query-from>
|
|
|
721 <Hsp_query-to>16</Hsp_query-to>
|
|
|
722 <Hsp_hit-from>961</Hsp_hit-from>
|
|
|
723 <Hsp_hit-to>976</Hsp_hit-to>
|
|
|
724 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
725 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
726 <Hsp_identity>16</Hsp_identity>
|
|
|
727 <Hsp_positive>16</Hsp_positive>
|
|
|
728 <Hsp_gaps>0</Hsp_gaps>
|
|
|
729 <Hsp_align-len>16</Hsp_align-len>
|
|
|
730 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
|
|
|
731 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
|
|
|
732 <Hsp_midline>||||||||||||||||</Hsp_midline>
|
|
|
733 </Hsp>
|
|
|
734 <Hsp>
|
|
|
735 <Hsp_num>2</Hsp_num>
|
|
|
736 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
737 <Hsp_score>8</Hsp_score>
|
|
|
738 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
739 <Hsp_query-from>5</Hsp_query-from>
|
|
|
740 <Hsp_query-to>12</Hsp_query-to>
|
|
|
741 <Hsp_hit-from>2591</Hsp_hit-from>
|
|
|
742 <Hsp_hit-to>2598</Hsp_hit-to>
|
|
|
743 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
744 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
745 <Hsp_identity>8</Hsp_identity>
|
|
|
746 <Hsp_positive>8</Hsp_positive>
|
|
|
747 <Hsp_gaps>0</Hsp_gaps>
|
|
|
748 <Hsp_align-len>8</Hsp_align-len>
|
|
|
749 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
750 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
751 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
752 </Hsp>
|
|
|
753 <Hsp>
|
|
|
754 <Hsp_num>3</Hsp_num>
|
|
|
755 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
756 <Hsp_score>7</Hsp_score>
|
|
|
757 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
758 <Hsp_query-from>7</Hsp_query-from>
|
|
|
759 <Hsp_query-to>13</Hsp_query-to>
|
|
|
760 <Hsp_hit-from>839</Hsp_hit-from>
|
|
|
761 <Hsp_hit-to>845</Hsp_hit-to>
|
|
|
762 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
763 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
764 <Hsp_identity>7</Hsp_identity>
|
|
|
765 <Hsp_positive>7</Hsp_positive>
|
|
|
766 <Hsp_gaps>0</Hsp_gaps>
|
|
|
767 <Hsp_align-len>7</Hsp_align-len>
|
|
|
768 <Hsp_qseq>TCGTGAA</Hsp_qseq>
|
|
|
769 <Hsp_hseq>TCGTGAA</Hsp_hseq>
|
|
|
770 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
771 </Hsp>
|
|
|
772 <Hsp>
|
|
|
773 <Hsp_num>4</Hsp_num>
|
|
|
774 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
775 <Hsp_score>7</Hsp_score>
|
|
|
776 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
777 <Hsp_query-from>9</Hsp_query-from>
|
|
|
778 <Hsp_query-to>15</Hsp_query-to>
|
|
|
779 <Hsp_hit-from>2027</Hsp_hit-from>
|
|
|
780 <Hsp_hit-to>2033</Hsp_hit-to>
|
|
|
781 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
782 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
783 <Hsp_identity>7</Hsp_identity>
|
|
|
784 <Hsp_positive>7</Hsp_positive>
|
|
|
785 <Hsp_gaps>0</Hsp_gaps>
|
|
|
786 <Hsp_align-len>7</Hsp_align-len>
|
|
|
787 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
788 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
789 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
790 </Hsp>
|
|
|
791 </Hit_hsps>
|
|
|
792 </Hit>
|
|
|
793 <Hit>
|
|
|
794 <Hit_num>10</Hit_num>
|
|
|
795 <Hit_id>gi|557804227|pdb|3J52|A</Hit_id>
|
|
|
796 <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1a, 50s Subunit)</Hit_def>
|
|
|
797 <Hit_accession>3J52_A</Hit_accession>
|
|
|
798 <Hit_len>2903</Hit_len>
|
|
|
799 <Hit_hsps>
|
|
|
800 <Hsp>
|
|
|
801 <Hsp_num>1</Hsp_num>
|
|
|
802 <Hsp_bit-score>32.2105</Hsp_bit-score>
|
|
|
803 <Hsp_score>16</Hsp_score>
|
|
|
804 <Hsp_evalue>0.000791334</Hsp_evalue>
|
|
|
805 <Hsp_query-from>1</Hsp_query-from>
|
|
|
806 <Hsp_query-to>16</Hsp_query-to>
|
|
|
807 <Hsp_hit-from>961</Hsp_hit-from>
|
|
|
808 <Hsp_hit-to>976</Hsp_hit-to>
|
|
|
809 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
810 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
811 <Hsp_identity>16</Hsp_identity>
|
|
|
812 <Hsp_positive>16</Hsp_positive>
|
|
|
813 <Hsp_gaps>0</Hsp_gaps>
|
|
|
814 <Hsp_align-len>16</Hsp_align-len>
|
|
|
815 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
|
|
|
816 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
|
|
|
817 <Hsp_midline>||||||||||||||||</Hsp_midline>
|
|
|
818 </Hsp>
|
|
|
819 <Hsp>
|
|
|
820 <Hsp_num>2</Hsp_num>
|
|
|
821 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
822 <Hsp_score>8</Hsp_score>
|
|
|
823 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
824 <Hsp_query-from>5</Hsp_query-from>
|
|
|
825 <Hsp_query-to>12</Hsp_query-to>
|
|
|
826 <Hsp_hit-from>2591</Hsp_hit-from>
|
|
|
827 <Hsp_hit-to>2598</Hsp_hit-to>
|
|
|
828 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
829 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
830 <Hsp_identity>8</Hsp_identity>
|
|
|
831 <Hsp_positive>8</Hsp_positive>
|
|
|
832 <Hsp_gaps>0</Hsp_gaps>
|
|
|
833 <Hsp_align-len>8</Hsp_align-len>
|
|
|
834 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
835 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
836 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
837 </Hsp>
|
|
|
838 <Hsp>
|
|
|
839 <Hsp_num>3</Hsp_num>
|
|
|
840 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
841 <Hsp_score>7</Hsp_score>
|
|
|
842 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
843 <Hsp_query-from>7</Hsp_query-from>
|
|
|
844 <Hsp_query-to>13</Hsp_query-to>
|
|
|
845 <Hsp_hit-from>839</Hsp_hit-from>
|
|
|
846 <Hsp_hit-to>845</Hsp_hit-to>
|
|
|
847 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
848 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
849 <Hsp_identity>7</Hsp_identity>
|
|
|
850 <Hsp_positive>7</Hsp_positive>
|
|
|
851 <Hsp_gaps>0</Hsp_gaps>
|
|
|
852 <Hsp_align-len>7</Hsp_align-len>
|
|
|
853 <Hsp_qseq>TCGTGAA</Hsp_qseq>
|
|
|
854 <Hsp_hseq>TCGTGAA</Hsp_hseq>
|
|
|
855 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
856 </Hsp>
|
|
|
857 <Hsp>
|
|
|
858 <Hsp_num>4</Hsp_num>
|
|
|
859 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
860 <Hsp_score>7</Hsp_score>
|
|
|
861 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
862 <Hsp_query-from>9</Hsp_query-from>
|
|
|
863 <Hsp_query-to>15</Hsp_query-to>
|
|
|
864 <Hsp_hit-from>2027</Hsp_hit-from>
|
|
|
865 <Hsp_hit-to>2033</Hsp_hit-to>
|
|
|
866 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
867 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
868 <Hsp_identity>7</Hsp_identity>
|
|
|
869 <Hsp_positive>7</Hsp_positive>
|
|
|
870 <Hsp_gaps>0</Hsp_gaps>
|
|
|
871 <Hsp_align-len>7</Hsp_align-len>
|
|
|
872 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
873 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
874 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
875 </Hsp>
|
|
|
876 </Hit_hsps>
|
|
|
877 </Hit>
|
|
|
878 <Hit>
|
|
|
879 <Hit_num>11</Hit_num>
|
|
|
880 <Hit_id>gi|557804195|pdb|3J51|A</Hit_id>
|
|
|
881 <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre3, 50s Subunit)</Hit_def>
|
|
|
882 <Hit_accession>3J51_A</Hit_accession>
|
|
|
883 <Hit_len>2903</Hit_len>
|
|
|
884 <Hit_hsps>
|
|
|
885 <Hsp>
|
|
|
886 <Hsp_num>1</Hsp_num>
|
|
|
887 <Hsp_bit-score>32.2105</Hsp_bit-score>
|
|
|
888 <Hsp_score>16</Hsp_score>
|
|
|
889 <Hsp_evalue>0.000791334</Hsp_evalue>
|
|
|
890 <Hsp_query-from>1</Hsp_query-from>
|
|
|
891 <Hsp_query-to>16</Hsp_query-to>
|
|
|
892 <Hsp_hit-from>961</Hsp_hit-from>
|
|
|
893 <Hsp_hit-to>976</Hsp_hit-to>
|
|
|
894 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
895 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
896 <Hsp_identity>16</Hsp_identity>
|
|
|
897 <Hsp_positive>16</Hsp_positive>
|
|
|
898 <Hsp_gaps>0</Hsp_gaps>
|
|
|
899 <Hsp_align-len>16</Hsp_align-len>
|
|
|
900 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
|
|
|
901 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
|
|
|
902 <Hsp_midline>||||||||||||||||</Hsp_midline>
|
|
|
903 </Hsp>
|
|
|
904 <Hsp>
|
|
|
905 <Hsp_num>2</Hsp_num>
|
|
|
906 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
907 <Hsp_score>8</Hsp_score>
|
|
|
908 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
909 <Hsp_query-from>5</Hsp_query-from>
|
|
|
910 <Hsp_query-to>12</Hsp_query-to>
|
|
|
911 <Hsp_hit-from>2591</Hsp_hit-from>
|
|
|
912 <Hsp_hit-to>2598</Hsp_hit-to>
|
|
|
913 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
914 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
915 <Hsp_identity>8</Hsp_identity>
|
|
|
916 <Hsp_positive>8</Hsp_positive>
|
|
|
917 <Hsp_gaps>0</Hsp_gaps>
|
|
|
918 <Hsp_align-len>8</Hsp_align-len>
|
|
|
919 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
920 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
921 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
922 </Hsp>
|
|
|
923 <Hsp>
|
|
|
924 <Hsp_num>3</Hsp_num>
|
|
|
925 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
926 <Hsp_score>7</Hsp_score>
|
|
|
927 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
928 <Hsp_query-from>7</Hsp_query-from>
|
|
|
929 <Hsp_query-to>13</Hsp_query-to>
|
|
|
930 <Hsp_hit-from>839</Hsp_hit-from>
|
|
|
931 <Hsp_hit-to>845</Hsp_hit-to>
|
|
|
932 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
933 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
934 <Hsp_identity>7</Hsp_identity>
|
|
|
935 <Hsp_positive>7</Hsp_positive>
|
|
|
936 <Hsp_gaps>0</Hsp_gaps>
|
|
|
937 <Hsp_align-len>7</Hsp_align-len>
|
|
|
938 <Hsp_qseq>TCGTGAA</Hsp_qseq>
|
|
|
939 <Hsp_hseq>TCGTGAA</Hsp_hseq>
|
|
|
940 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
941 </Hsp>
|
|
|
942 <Hsp>
|
|
|
943 <Hsp_num>4</Hsp_num>
|
|
|
944 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
945 <Hsp_score>7</Hsp_score>
|
|
|
946 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
947 <Hsp_query-from>9</Hsp_query-from>
|
|
|
948 <Hsp_query-to>15</Hsp_query-to>
|
|
|
949 <Hsp_hit-from>2027</Hsp_hit-from>
|
|
|
950 <Hsp_hit-to>2033</Hsp_hit-to>
|
|
|
951 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
952 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
953 <Hsp_identity>7</Hsp_identity>
|
|
|
954 <Hsp_positive>7</Hsp_positive>
|
|
|
955 <Hsp_gaps>0</Hsp_gaps>
|
|
|
956 <Hsp_align-len>7</Hsp_align-len>
|
|
|
957 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
958 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
959 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
960 </Hsp>
|
|
|
961 </Hit_hsps>
|
|
|
962 </Hit>
|
|
|
963 <Hit>
|
|
|
964 <Hit_num>12</Hit_num>
|
|
|
965 <Hit_id>gi|557804163|pdb|3J50|A</Hit_id>
|
|
|
966 <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre2, 50s Subunit)</Hit_def>
|
|
|
967 <Hit_accession>3J50_A</Hit_accession>
|
|
|
968 <Hit_len>2903</Hit_len>
|
|
|
969 <Hit_hsps>
|
|
|
970 <Hsp>
|
|
|
971 <Hsp_num>1</Hsp_num>
|
|
|
972 <Hsp_bit-score>32.2105</Hsp_bit-score>
|
|
|
973 <Hsp_score>16</Hsp_score>
|
|
|
974 <Hsp_evalue>0.000791334</Hsp_evalue>
|
|
|
975 <Hsp_query-from>1</Hsp_query-from>
|
|
|
976 <Hsp_query-to>16</Hsp_query-to>
|
|
|
977 <Hsp_hit-from>961</Hsp_hit-from>
|
|
|
978 <Hsp_hit-to>976</Hsp_hit-to>
|
|
|
979 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
980 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
981 <Hsp_identity>16</Hsp_identity>
|
|
|
982 <Hsp_positive>16</Hsp_positive>
|
|
|
983 <Hsp_gaps>0</Hsp_gaps>
|
|
|
984 <Hsp_align-len>16</Hsp_align-len>
|
|
|
985 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
|
|
|
986 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
|
|
|
987 <Hsp_midline>||||||||||||||||</Hsp_midline>
|
|
|
988 </Hsp>
|
|
|
989 <Hsp>
|
|
|
990 <Hsp_num>2</Hsp_num>
|
|
|
991 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
992 <Hsp_score>8</Hsp_score>
|
|
|
993 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
994 <Hsp_query-from>5</Hsp_query-from>
|
|
|
995 <Hsp_query-to>12</Hsp_query-to>
|
|
|
996 <Hsp_hit-from>2591</Hsp_hit-from>
|
|
|
997 <Hsp_hit-to>2598</Hsp_hit-to>
|
|
|
998 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
999 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1000 <Hsp_identity>8</Hsp_identity>
|
|
|
1001 <Hsp_positive>8</Hsp_positive>
|
|
|
1002 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1003 <Hsp_align-len>8</Hsp_align-len>
|
|
|
1004 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
1005 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
1006 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
1007 </Hsp>
|
|
|
1008 <Hsp>
|
|
|
1009 <Hsp_num>3</Hsp_num>
|
|
|
1010 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
1011 <Hsp_score>7</Hsp_score>
|
|
|
1012 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
1013 <Hsp_query-from>7</Hsp_query-from>
|
|
|
1014 <Hsp_query-to>13</Hsp_query-to>
|
|
|
1015 <Hsp_hit-from>839</Hsp_hit-from>
|
|
|
1016 <Hsp_hit-to>845</Hsp_hit-to>
|
|
|
1017 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1018 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1019 <Hsp_identity>7</Hsp_identity>
|
|
|
1020 <Hsp_positive>7</Hsp_positive>
|
|
|
1021 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1022 <Hsp_align-len>7</Hsp_align-len>
|
|
|
1023 <Hsp_qseq>TCGTGAA</Hsp_qseq>
|
|
|
1024 <Hsp_hseq>TCGTGAA</Hsp_hseq>
|
|
|
1025 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
1026 </Hsp>
|
|
|
1027 <Hsp>
|
|
|
1028 <Hsp_num>4</Hsp_num>
|
|
|
1029 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
1030 <Hsp_score>7</Hsp_score>
|
|
|
1031 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
1032 <Hsp_query-from>9</Hsp_query-from>
|
|
|
1033 <Hsp_query-to>15</Hsp_query-to>
|
|
|
1034 <Hsp_hit-from>2027</Hsp_hit-from>
|
|
|
1035 <Hsp_hit-to>2033</Hsp_hit-to>
|
|
|
1036 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1037 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1038 <Hsp_identity>7</Hsp_identity>
|
|
|
1039 <Hsp_positive>7</Hsp_positive>
|
|
|
1040 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1041 <Hsp_align-len>7</Hsp_align-len>
|
|
|
1042 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
1043 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
1044 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
1045 </Hsp>
|
|
|
1046 </Hit_hsps>
|
|
|
1047 </Hit>
|
|
|
1048 <Hit>
|
|
|
1049 <Hit_num>13</Hit_num>
|
|
|
1050 <Hit_id>gi|557804083|pdb|3J4X|A</Hit_id>
|
|
|
1051 <Hit_def>Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1b, 50s Subunit)</Hit_def>
|
|
|
1052 <Hit_accession>3J4X_A</Hit_accession>
|
|
|
1053 <Hit_len>2903</Hit_len>
|
|
|
1054 <Hit_hsps>
|
|
|
1055 <Hsp>
|
|
|
1056 <Hsp_num>1</Hsp_num>
|
|
|
1057 <Hsp_bit-score>32.2105</Hsp_bit-score>
|
|
|
1058 <Hsp_score>16</Hsp_score>
|
|
|
1059 <Hsp_evalue>0.000791334</Hsp_evalue>
|
|
|
1060 <Hsp_query-from>1</Hsp_query-from>
|
|
|
1061 <Hsp_query-to>16</Hsp_query-to>
|
|
|
1062 <Hsp_hit-from>961</Hsp_hit-from>
|
|
|
1063 <Hsp_hit-to>976</Hsp_hit-to>
|
|
|
1064 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1065 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1066 <Hsp_identity>16</Hsp_identity>
|
|
|
1067 <Hsp_positive>16</Hsp_positive>
|
|
|
1068 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1069 <Hsp_align-len>16</Hsp_align-len>
|
|
|
1070 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
|
|
|
1071 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
|
|
|
1072 <Hsp_midline>||||||||||||||||</Hsp_midline>
|
|
|
1073 </Hsp>
|
|
|
1074 <Hsp>
|
|
|
1075 <Hsp_num>2</Hsp_num>
|
|
|
1076 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
1077 <Hsp_score>8</Hsp_score>
|
|
|
1078 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
1079 <Hsp_query-from>5</Hsp_query-from>
|
|
|
1080 <Hsp_query-to>12</Hsp_query-to>
|
|
|
1081 <Hsp_hit-from>2591</Hsp_hit-from>
|
|
|
1082 <Hsp_hit-to>2598</Hsp_hit-to>
|
|
|
1083 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1084 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1085 <Hsp_identity>8</Hsp_identity>
|
|
|
1086 <Hsp_positive>8</Hsp_positive>
|
|
|
1087 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1088 <Hsp_align-len>8</Hsp_align-len>
|
|
|
1089 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
1090 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
1091 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
1092 </Hsp>
|
|
|
1093 <Hsp>
|
|
|
1094 <Hsp_num>3</Hsp_num>
|
|
|
1095 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
1096 <Hsp_score>7</Hsp_score>
|
|
|
1097 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
1098 <Hsp_query-from>7</Hsp_query-from>
|
|
|
1099 <Hsp_query-to>13</Hsp_query-to>
|
|
|
1100 <Hsp_hit-from>839</Hsp_hit-from>
|
|
|
1101 <Hsp_hit-to>845</Hsp_hit-to>
|
|
|
1102 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1103 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1104 <Hsp_identity>7</Hsp_identity>
|
|
|
1105 <Hsp_positive>7</Hsp_positive>
|
|
|
1106 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1107 <Hsp_align-len>7</Hsp_align-len>
|
|
|
1108 <Hsp_qseq>TCGTGAA</Hsp_qseq>
|
|
|
1109 <Hsp_hseq>TCGTGAA</Hsp_hseq>
|
|
|
1110 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
1111 </Hsp>
|
|
|
1112 <Hsp>
|
|
|
1113 <Hsp_num>4</Hsp_num>
|
|
|
1114 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
1115 <Hsp_score>7</Hsp_score>
|
|
|
1116 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
1117 <Hsp_query-from>9</Hsp_query-from>
|
|
|
1118 <Hsp_query-to>15</Hsp_query-to>
|
|
|
1119 <Hsp_hit-from>2027</Hsp_hit-from>
|
|
|
1120 <Hsp_hit-to>2033</Hsp_hit-to>
|
|
|
1121 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1122 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1123 <Hsp_identity>7</Hsp_identity>
|
|
|
1124 <Hsp_positive>7</Hsp_positive>
|
|
|
1125 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1126 <Hsp_align-len>7</Hsp_align-len>
|
|
|
1127 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
1128 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
1129 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
1130 </Hsp>
|
|
|
1131 </Hit_hsps>
|
|
|
1132 </Hit>
|
|
|
1133 <Hit>
|
|
|
1134 <Hit_num>14</Hit_num>
|
|
|
1135 <Hit_id>gi|474452808|pdb|3J37|A</Hit_id>
|
|
|
1136 <Hit_def>Chain A, Tetracycline Resistance Protein Tet(o) Bound To The Ribosome</Hit_def>
|
|
|
1137 <Hit_accession>3J37_A</Hit_accession>
|
|
|
1138 <Hit_len>2904</Hit_len>
|
|
|
1139 <Hit_hsps>
|
|
|
1140 <Hsp>
|
|
|
1141 <Hsp_num>1</Hsp_num>
|
|
|
1142 <Hsp_bit-score>32.2105</Hsp_bit-score>
|
|
|
1143 <Hsp_score>16</Hsp_score>
|
|
|
1144 <Hsp_evalue>0.000791334</Hsp_evalue>
|
|
|
1145 <Hsp_query-from>1</Hsp_query-from>
|
|
|
1146 <Hsp_query-to>16</Hsp_query-to>
|
|
|
1147 <Hsp_hit-from>961</Hsp_hit-from>
|
|
|
1148 <Hsp_hit-to>976</Hsp_hit-to>
|
|
|
1149 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1150 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1151 <Hsp_identity>16</Hsp_identity>
|
|
|
1152 <Hsp_positive>16</Hsp_positive>
|
|
|
1153 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1154 <Hsp_align-len>16</Hsp_align-len>
|
|
|
1155 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
|
|
|
1156 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
|
|
|
1157 <Hsp_midline>||||||||||||||||</Hsp_midline>
|
|
|
1158 </Hsp>
|
|
|
1159 <Hsp>
|
|
|
1160 <Hsp_num>2</Hsp_num>
|
|
|
1161 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
1162 <Hsp_score>8</Hsp_score>
|
|
|
1163 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
1164 <Hsp_query-from>5</Hsp_query-from>
|
|
|
1165 <Hsp_query-to>12</Hsp_query-to>
|
|
|
1166 <Hsp_hit-from>2591</Hsp_hit-from>
|
|
|
1167 <Hsp_hit-to>2598</Hsp_hit-to>
|
|
|
1168 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1169 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1170 <Hsp_identity>8</Hsp_identity>
|
|
|
1171 <Hsp_positive>8</Hsp_positive>
|
|
|
1172 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1173 <Hsp_align-len>8</Hsp_align-len>
|
|
|
1174 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
1175 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
1176 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
1177 </Hsp>
|
|
|
1178 <Hsp>
|
|
|
1179 <Hsp_num>3</Hsp_num>
|
|
|
1180 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
1181 <Hsp_score>7</Hsp_score>
|
|
|
1182 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
1183 <Hsp_query-from>7</Hsp_query-from>
|
|
|
1184 <Hsp_query-to>13</Hsp_query-to>
|
|
|
1185 <Hsp_hit-from>839</Hsp_hit-from>
|
|
|
1186 <Hsp_hit-to>845</Hsp_hit-to>
|
|
|
1187 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1188 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1189 <Hsp_identity>7</Hsp_identity>
|
|
|
1190 <Hsp_positive>7</Hsp_positive>
|
|
|
1191 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1192 <Hsp_align-len>7</Hsp_align-len>
|
|
|
1193 <Hsp_qseq>TCGTGAA</Hsp_qseq>
|
|
|
1194 <Hsp_hseq>TCGTGAA</Hsp_hseq>
|
|
|
1195 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
1196 </Hsp>
|
|
|
1197 </Hit_hsps>
|
|
|
1198 </Hit>
|
|
|
1199 <Hit>
|
|
|
1200 <Hit_num>15</Hit_num>
|
|
|
1201 <Hit_id>gi|326634210|pdb|3IZT|B</Hit_id>
|
|
|
1202 <Hit_def>Chain B, Structural Insights Into Cognate Vs. Near-Cognate Discrimination During Decoding. This Entry Contains The Large Subunit Of A Ribosome Programmed With A Near-Cognate Codon. >gi|326634243|pdb|3IZU|B Chain B, Structural Insights Into Cognate Vs. Near-Cognate Discrimination During Decoding. This Entry Contains The Large Subunit Of A Ribosome Programmed With A Cognate Codon >gi|380763703|pdb|3J0T|B Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class2 Of The Six Classes) >gi|380763785|pdb|3J0W|B Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class 4a Of The Six Classes) >gi|380763843|pdb|3J0Y|B Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class 4b Of The Six Classes) >gi|380763925|pdb|3J11|B Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class 3 Of The Six Classes) >gi|380763959|pdb|3J12|B Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class 5 Of The Six Classes) >gi|380764016|pdb|3J14|B Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class 6 Of The Six Classes)</Hit_def>
|
|
|
1203 <Hit_accession>3IZT_B</Hit_accession>
|
|
|
1204 <Hit_len>2904</Hit_len>
|
|
|
1205 <Hit_hsps>
|
|
|
1206 <Hsp>
|
|
|
1207 <Hsp_num>1</Hsp_num>
|
|
|
1208 <Hsp_bit-score>32.2105</Hsp_bit-score>
|
|
|
1209 <Hsp_score>16</Hsp_score>
|
|
|
1210 <Hsp_evalue>0.000791334</Hsp_evalue>
|
|
|
1211 <Hsp_query-from>1</Hsp_query-from>
|
|
|
1212 <Hsp_query-to>16</Hsp_query-to>
|
|
|
1213 <Hsp_hit-from>961</Hsp_hit-from>
|
|
|
1214 <Hsp_hit-to>976</Hsp_hit-to>
|
|
|
1215 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1216 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1217 <Hsp_identity>16</Hsp_identity>
|
|
|
1218 <Hsp_positive>16</Hsp_positive>
|
|
|
1219 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1220 <Hsp_align-len>16</Hsp_align-len>
|
|
|
1221 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
|
|
|
1222 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
|
|
|
1223 <Hsp_midline>||||||||||||||||</Hsp_midline>
|
|
|
1224 </Hsp>
|
|
|
1225 <Hsp>
|
|
|
1226 <Hsp_num>2</Hsp_num>
|
|
|
1227 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
1228 <Hsp_score>8</Hsp_score>
|
|
|
1229 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
1230 <Hsp_query-from>5</Hsp_query-from>
|
|
|
1231 <Hsp_query-to>12</Hsp_query-to>
|
|
|
1232 <Hsp_hit-from>2591</Hsp_hit-from>
|
|
|
1233 <Hsp_hit-to>2598</Hsp_hit-to>
|
|
|
1234 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1235 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1236 <Hsp_identity>8</Hsp_identity>
|
|
|
1237 <Hsp_positive>8</Hsp_positive>
|
|
|
1238 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1239 <Hsp_align-len>8</Hsp_align-len>
|
|
|
1240 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
1241 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
1242 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
1243 </Hsp>
|
|
|
1244 <Hsp>
|
|
|
1245 <Hsp_num>3</Hsp_num>
|
|
|
1246 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
1247 <Hsp_score>7</Hsp_score>
|
|
|
1248 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
1249 <Hsp_query-from>7</Hsp_query-from>
|
|
|
1250 <Hsp_query-to>13</Hsp_query-to>
|
|
|
1251 <Hsp_hit-from>839</Hsp_hit-from>
|
|
|
1252 <Hsp_hit-to>845</Hsp_hit-to>
|
|
|
1253 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1254 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1255 <Hsp_identity>7</Hsp_identity>
|
|
|
1256 <Hsp_positive>7</Hsp_positive>
|
|
|
1257 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1258 <Hsp_align-len>7</Hsp_align-len>
|
|
|
1259 <Hsp_qseq>TCGTGAA</Hsp_qseq>
|
|
|
1260 <Hsp_hseq>TCGTGAA</Hsp_hseq>
|
|
|
1261 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
1262 </Hsp>
|
|
|
1263 </Hit_hsps>
|
|
|
1264 </Hit>
|
|
|
1265 <Hit>
|
|
|
1266 <Hit_num>16</Hit_num>
|
|
|
1267 <Hit_id>gi|224510767|pdb|3FIK|B</Hit_id>
|
|
|
1268 <Hit_def>Chain B, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. >gi|257097373|pdb|3I1N|A Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting >gi|257097425|pdb|3I1P|A Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting >gi|257097479|pdb|3I1R|A Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting >gi|257097533|pdb|3I1T|A Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting >gi|257097588|pdb|3I20|A Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting >gi|257097643|pdb|3I22|A Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting >gi|294662251|pdb|2WWQ|B Chain B, E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide. This File Contains The 50s, The P-Site Trna And The Tnac Leader Peptide (Part 2 Of 2). >gi|309320065|pdb|3OFC|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Chloramphenicol. This File Contains The 50s Subunit Of The First 70s Ribosome With Chloramphenicol Bound. >gi|309320169|pdb|3OFZ|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Clindamycin. This File Contains The 50s Subunit Of The First 70s Ribosome Bound To Clindamycin. >gi|309320200|pdb|3OG0|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Clindamycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. >gi|315113654|pdb|3OAS|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Telithromycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. >gi|315113685|pdb|3OAT|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Telithromycin. This File Contains The 50s Subunit Of The First 70s Ribosome With Telithromycin Bound. >gi|334359437|pdb|3R8S|A Chain A, Structures Of The Bacterial Ribosome In Classical And Hybrid States Of Trna Binding >gi|334359468|pdb|3R8T|A Chain A, Structures Of The Bacterial Ribosome In Classical And Hybrid States Of Trna Binding >gi|371927526|pdb|3SGF|A Chain A, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome >gi|371927651|pdb|3UOS|A Chain A, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome (Without Viomycin) >gi|386783121|pdb|3J19|A Chain A, Structure Of The Bacterial Ribosome Complexed By Tmrna-Smpb And Ef-G During Translocation And Mld-Loading (50s Subunit) >gi|567754995|pdb|3J5U|A Chain A, Structure Of The Ribosome With Elongation Factor G Trapped In The Pre- Translocation State (pre-translocation 70s*trna Structure, 50s Subunit) >gi|567755029|pdb|3J5W|A Chain A, Structure Of The Ribosome With Elongation Factor G Trapped In The Pre- Translocation State (pre-translocation 70s*trna*ef-g Structure, 50s Subunit)</Hit_def>
|
|
|
1269 <Hit_accession>3FIK_B</Hit_accession>
|
|
|
1270 <Hit_len>2903</Hit_len>
|
|
|
1271 <Hit_hsps>
|
|
|
1272 <Hsp>
|
|
|
1273 <Hsp_num>1</Hsp_num>
|
|
|
1274 <Hsp_bit-score>32.2105</Hsp_bit-score>
|
|
|
1275 <Hsp_score>16</Hsp_score>
|
|
|
1276 <Hsp_evalue>0.000791334</Hsp_evalue>
|
|
|
1277 <Hsp_query-from>1</Hsp_query-from>
|
|
|
1278 <Hsp_query-to>16</Hsp_query-to>
|
|
|
1279 <Hsp_hit-from>961</Hsp_hit-from>
|
|
|
1280 <Hsp_hit-to>976</Hsp_hit-to>
|
|
|
1281 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1282 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1283 <Hsp_identity>16</Hsp_identity>
|
|
|
1284 <Hsp_positive>16</Hsp_positive>
|
|
|
1285 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1286 <Hsp_align-len>16</Hsp_align-len>
|
|
|
1287 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
|
|
|
1288 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
|
|
|
1289 <Hsp_midline>||||||||||||||||</Hsp_midline>
|
|
|
1290 </Hsp>
|
|
|
1291 <Hsp>
|
|
|
1292 <Hsp_num>2</Hsp_num>
|
|
|
1293 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
1294 <Hsp_score>8</Hsp_score>
|
|
|
1295 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
1296 <Hsp_query-from>5</Hsp_query-from>
|
|
|
1297 <Hsp_query-to>12</Hsp_query-to>
|
|
|
1298 <Hsp_hit-from>2591</Hsp_hit-from>
|
|
|
1299 <Hsp_hit-to>2598</Hsp_hit-to>
|
|
|
1300 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1301 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1302 <Hsp_identity>8</Hsp_identity>
|
|
|
1303 <Hsp_positive>8</Hsp_positive>
|
|
|
1304 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1305 <Hsp_align-len>8</Hsp_align-len>
|
|
|
1306 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
1307 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
1308 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
1309 </Hsp>
|
|
|
1310 <Hsp>
|
|
|
1311 <Hsp_num>3</Hsp_num>
|
|
|
1312 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
1313 <Hsp_score>7</Hsp_score>
|
|
|
1314 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
1315 <Hsp_query-from>7</Hsp_query-from>
|
|
|
1316 <Hsp_query-to>13</Hsp_query-to>
|
|
|
1317 <Hsp_hit-from>839</Hsp_hit-from>
|
|
|
1318 <Hsp_hit-to>845</Hsp_hit-to>
|
|
|
1319 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1320 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1321 <Hsp_identity>7</Hsp_identity>
|
|
|
1322 <Hsp_positive>7</Hsp_positive>
|
|
|
1323 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1324 <Hsp_align-len>7</Hsp_align-len>
|
|
|
1325 <Hsp_qseq>TCGTGAA</Hsp_qseq>
|
|
|
1326 <Hsp_hseq>TCGTGAA</Hsp_hseq>
|
|
|
1327 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
1328 </Hsp>
|
|
|
1329 <Hsp>
|
|
|
1330 <Hsp_num>4</Hsp_num>
|
|
|
1331 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
1332 <Hsp_score>7</Hsp_score>
|
|
|
1333 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
1334 <Hsp_query-from>9</Hsp_query-from>
|
|
|
1335 <Hsp_query-to>15</Hsp_query-to>
|
|
|
1336 <Hsp_hit-from>2027</Hsp_hit-from>
|
|
|
1337 <Hsp_hit-to>2033</Hsp_hit-to>
|
|
|
1338 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1339 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1340 <Hsp_identity>7</Hsp_identity>
|
|
|
1341 <Hsp_positive>7</Hsp_positive>
|
|
|
1342 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1343 <Hsp_align-len>7</Hsp_align-len>
|
|
|
1344 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
1345 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
1346 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
1347 </Hsp>
|
|
|
1348 </Hit_hsps>
|
|
|
1349 </Hit>
|
|
|
1350 <Hit>
|
|
|
1351 <Hit_num>17</Hit_num>
|
|
|
1352 <Hit_id>gi|256032374|pdb|3E1B|B</Hit_id>
|
|
|
1353 <Hit_def>Chain B, Structure Of The 50s Subunit Of E. Coli Ribosome In Pre-Accommodation State >gi|256032431|pdb|3E1D|B Chain B, Structure Of The 50s Subunit Of E. Coli Ribosome In Post-Accommodation State</Hit_def>
|
|
|
1354 <Hit_accession>3E1B_B</Hit_accession>
|
|
|
1355 <Hit_len>2903</Hit_len>
|
|
|
1356 <Hit_hsps>
|
|
|
1357 <Hsp>
|
|
|
1358 <Hsp_num>1</Hsp_num>
|
|
|
1359 <Hsp_bit-score>32.2105</Hsp_bit-score>
|
|
|
1360 <Hsp_score>16</Hsp_score>
|
|
|
1361 <Hsp_evalue>0.000791334</Hsp_evalue>
|
|
|
1362 <Hsp_query-from>1</Hsp_query-from>
|
|
|
1363 <Hsp_query-to>16</Hsp_query-to>
|
|
|
1364 <Hsp_hit-from>961</Hsp_hit-from>
|
|
|
1365 <Hsp_hit-to>976</Hsp_hit-to>
|
|
|
1366 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1367 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1368 <Hsp_identity>16</Hsp_identity>
|
|
|
1369 <Hsp_positive>16</Hsp_positive>
|
|
|
1370 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1371 <Hsp_align-len>16</Hsp_align-len>
|
|
|
1372 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
|
|
|
1373 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
|
|
|
1374 <Hsp_midline>||||||||||||||||</Hsp_midline>
|
|
|
1375 </Hsp>
|
|
|
1376 <Hsp>
|
|
|
1377 <Hsp_num>2</Hsp_num>
|
|
|
1378 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
1379 <Hsp_score>8</Hsp_score>
|
|
|
1380 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
1381 <Hsp_query-from>5</Hsp_query-from>
|
|
|
1382 <Hsp_query-to>12</Hsp_query-to>
|
|
|
1383 <Hsp_hit-from>2591</Hsp_hit-from>
|
|
|
1384 <Hsp_hit-to>2598</Hsp_hit-to>
|
|
|
1385 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1386 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1387 <Hsp_identity>8</Hsp_identity>
|
|
|
1388 <Hsp_positive>8</Hsp_positive>
|
|
|
1389 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1390 <Hsp_align-len>8</Hsp_align-len>
|
|
|
1391 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
1392 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
1393 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
1394 </Hsp>
|
|
|
1395 <Hsp>
|
|
|
1396 <Hsp_num>3</Hsp_num>
|
|
|
1397 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
1398 <Hsp_score>7</Hsp_score>
|
|
|
1399 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
1400 <Hsp_query-from>7</Hsp_query-from>
|
|
|
1401 <Hsp_query-to>13</Hsp_query-to>
|
|
|
1402 <Hsp_hit-from>839</Hsp_hit-from>
|
|
|
1403 <Hsp_hit-to>845</Hsp_hit-to>
|
|
|
1404 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1405 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1406 <Hsp_identity>7</Hsp_identity>
|
|
|
1407 <Hsp_positive>7</Hsp_positive>
|
|
|
1408 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1409 <Hsp_align-len>7</Hsp_align-len>
|
|
|
1410 <Hsp_qseq>TCGTGAA</Hsp_qseq>
|
|
|
1411 <Hsp_hseq>TCGTGAA</Hsp_hseq>
|
|
|
1412 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
1413 </Hsp>
|
|
|
1414 <Hsp>
|
|
|
1415 <Hsp_num>4</Hsp_num>
|
|
|
1416 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
1417 <Hsp_score>7</Hsp_score>
|
|
|
1418 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
1419 <Hsp_query-from>9</Hsp_query-from>
|
|
|
1420 <Hsp_query-to>15</Hsp_query-to>
|
|
|
1421 <Hsp_hit-from>2027</Hsp_hit-from>
|
|
|
1422 <Hsp_hit-to>2033</Hsp_hit-to>
|
|
|
1423 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1424 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1425 <Hsp_identity>7</Hsp_identity>
|
|
|
1426 <Hsp_positive>7</Hsp_positive>
|
|
|
1427 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1428 <Hsp_align-len>7</Hsp_align-len>
|
|
|
1429 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
1430 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
1431 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
1432 </Hsp>
|
|
|
1433 </Hit_hsps>
|
|
|
1434 </Hit>
|
|
|
1435 <Hit>
|
|
|
1436 <Hit_num>18</Hit_num>
|
|
|
1437 <Hit_id>gi|157883716|pdb|2GYC|0</Hit_id>
|
|
|
1438 <Hit_def>Chain 0, Structure Of The 50s Subunit Of A Secm-Stalled E. Coli Ribosome Complex Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1143</Hit_def>
|
|
|
1439 <Hit_accession>2GYC_0</Hit_accession>
|
|
|
1440 <Hit_len>2740</Hit_len>
|
|
|
1441 <Hit_hsps>
|
|
|
1442 <Hsp>
|
|
|
1443 <Hsp_num>1</Hsp_num>
|
|
|
1444 <Hsp_bit-score>32.2105</Hsp_bit-score>
|
|
|
1445 <Hsp_score>16</Hsp_score>
|
|
|
1446 <Hsp_evalue>0.000791334</Hsp_evalue>
|
|
|
1447 <Hsp_query-from>1</Hsp_query-from>
|
|
|
1448 <Hsp_query-to>16</Hsp_query-to>
|
|
|
1449 <Hsp_hit-from>889</Hsp_hit-from>
|
|
|
1450 <Hsp_hit-to>904</Hsp_hit-to>
|
|
|
1451 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1452 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1453 <Hsp_identity>16</Hsp_identity>
|
|
|
1454 <Hsp_positive>16</Hsp_positive>
|
|
|
1455 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1456 <Hsp_align-len>16</Hsp_align-len>
|
|
|
1457 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
|
|
|
1458 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
|
|
|
1459 <Hsp_midline>||||||||||||||||</Hsp_midline>
|
|
|
1460 </Hsp>
|
|
|
1461 <Hsp>
|
|
|
1462 <Hsp_num>2</Hsp_num>
|
|
|
1463 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
1464 <Hsp_score>8</Hsp_score>
|
|
|
1465 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
1466 <Hsp_query-from>5</Hsp_query-from>
|
|
|
1467 <Hsp_query-to>12</Hsp_query-to>
|
|
|
1468 <Hsp_hit-from>2453</Hsp_hit-from>
|
|
|
1469 <Hsp_hit-to>2460</Hsp_hit-to>
|
|
|
1470 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1471 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1472 <Hsp_identity>8</Hsp_identity>
|
|
|
1473 <Hsp_positive>8</Hsp_positive>
|
|
|
1474 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1475 <Hsp_align-len>8</Hsp_align-len>
|
|
|
1476 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
1477 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
1478 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
1479 </Hsp>
|
|
|
1480 <Hsp>
|
|
|
1481 <Hsp_num>3</Hsp_num>
|
|
|
1482 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
1483 <Hsp_score>7</Hsp_score>
|
|
|
1484 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
1485 <Hsp_query-from>7</Hsp_query-from>
|
|
|
1486 <Hsp_query-to>13</Hsp_query-to>
|
|
|
1487 <Hsp_hit-from>776</Hsp_hit-from>
|
|
|
1488 <Hsp_hit-to>782</Hsp_hit-to>
|
|
|
1489 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1490 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1491 <Hsp_identity>7</Hsp_identity>
|
|
|
1492 <Hsp_positive>7</Hsp_positive>
|
|
|
1493 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1494 <Hsp_align-len>7</Hsp_align-len>
|
|
|
1495 <Hsp_qseq>TCGTGAA</Hsp_qseq>
|
|
|
1496 <Hsp_hseq>TCGTGAA</Hsp_hseq>
|
|
|
1497 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
1498 </Hsp>
|
|
|
1499 <Hsp>
|
|
|
1500 <Hsp_num>4</Hsp_num>
|
|
|
1501 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
1502 <Hsp_score>7</Hsp_score>
|
|
|
1503 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
1504 <Hsp_query-from>9</Hsp_query-from>
|
|
|
1505 <Hsp_query-to>15</Hsp_query-to>
|
|
|
1506 <Hsp_hit-from>1910</Hsp_hit-from>
|
|
|
1507 <Hsp_hit-to>1916</Hsp_hit-to>
|
|
|
1508 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1509 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1510 <Hsp_identity>7</Hsp_identity>
|
|
|
1511 <Hsp_positive>7</Hsp_positive>
|
|
|
1512 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1513 <Hsp_align-len>7</Hsp_align-len>
|
|
|
1514 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
1515 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
1516 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
1517 </Hsp>
|
|
|
1518 </Hit_hsps>
|
|
|
1519 </Hit>
|
|
|
1520 <Hit>
|
|
|
1521 <Hit_num>19</Hit_num>
|
|
|
1522 <Hit_id>gi|157883710|pdb|2GYA|0</Hit_id>
|
|
|
1523 <Hit_def>Chain 0, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056</Hit_def>
|
|
|
1524 <Hit_accession>2GYA_0</Hit_accession>
|
|
|
1525 <Hit_len>2740</Hit_len>
|
|
|
1526 <Hit_hsps>
|
|
|
1527 <Hsp>
|
|
|
1528 <Hsp_num>1</Hsp_num>
|
|
|
1529 <Hsp_bit-score>32.2105</Hsp_bit-score>
|
|
|
1530 <Hsp_score>16</Hsp_score>
|
|
|
1531 <Hsp_evalue>0.000791334</Hsp_evalue>
|
|
|
1532 <Hsp_query-from>1</Hsp_query-from>
|
|
|
1533 <Hsp_query-to>16</Hsp_query-to>
|
|
|
1534 <Hsp_hit-from>889</Hsp_hit-from>
|
|
|
1535 <Hsp_hit-to>904</Hsp_hit-to>
|
|
|
1536 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1537 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1538 <Hsp_identity>16</Hsp_identity>
|
|
|
1539 <Hsp_positive>16</Hsp_positive>
|
|
|
1540 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1541 <Hsp_align-len>16</Hsp_align-len>
|
|
|
1542 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
|
|
|
1543 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
|
|
|
1544 <Hsp_midline>||||||||||||||||</Hsp_midline>
|
|
|
1545 </Hsp>
|
|
|
1546 <Hsp>
|
|
|
1547 <Hsp_num>2</Hsp_num>
|
|
|
1548 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
1549 <Hsp_score>8</Hsp_score>
|
|
|
1550 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
1551 <Hsp_query-from>5</Hsp_query-from>
|
|
|
1552 <Hsp_query-to>12</Hsp_query-to>
|
|
|
1553 <Hsp_hit-from>2453</Hsp_hit-from>
|
|
|
1554 <Hsp_hit-to>2460</Hsp_hit-to>
|
|
|
1555 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1556 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1557 <Hsp_identity>8</Hsp_identity>
|
|
|
1558 <Hsp_positive>8</Hsp_positive>
|
|
|
1559 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1560 <Hsp_align-len>8</Hsp_align-len>
|
|
|
1561 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
1562 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
1563 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
1564 </Hsp>
|
|
|
1565 <Hsp>
|
|
|
1566 <Hsp_num>3</Hsp_num>
|
|
|
1567 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
1568 <Hsp_score>7</Hsp_score>
|
|
|
1569 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
1570 <Hsp_query-from>7</Hsp_query-from>
|
|
|
1571 <Hsp_query-to>13</Hsp_query-to>
|
|
|
1572 <Hsp_hit-from>776</Hsp_hit-from>
|
|
|
1573 <Hsp_hit-to>782</Hsp_hit-to>
|
|
|
1574 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1575 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1576 <Hsp_identity>7</Hsp_identity>
|
|
|
1577 <Hsp_positive>7</Hsp_positive>
|
|
|
1578 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1579 <Hsp_align-len>7</Hsp_align-len>
|
|
|
1580 <Hsp_qseq>TCGTGAA</Hsp_qseq>
|
|
|
1581 <Hsp_hseq>TCGTGAA</Hsp_hseq>
|
|
|
1582 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
1583 </Hsp>
|
|
|
1584 <Hsp>
|
|
|
1585 <Hsp_num>4</Hsp_num>
|
|
|
1586 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
1587 <Hsp_score>7</Hsp_score>
|
|
|
1588 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
1589 <Hsp_query-from>9</Hsp_query-from>
|
|
|
1590 <Hsp_query-to>15</Hsp_query-to>
|
|
|
1591 <Hsp_hit-from>1910</Hsp_hit-from>
|
|
|
1592 <Hsp_hit-to>1916</Hsp_hit-to>
|
|
|
1593 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1594 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1595 <Hsp_identity>7</Hsp_identity>
|
|
|
1596 <Hsp_positive>7</Hsp_positive>
|
|
|
1597 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1598 <Hsp_align-len>7</Hsp_align-len>
|
|
|
1599 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
1600 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
1601 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
1602 </Hsp>
|
|
|
1603 </Hit_hsps>
|
|
|
1604 </Hit>
|
|
|
1605 <Hit>
|
|
|
1606 <Hit_num>20</Hit_num>
|
|
|
1607 <Hit_id>gi|122922257|pdb|2I2V|B</Hit_id>
|
|
|
1608 <Hit_def>Chain B, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.</Hit_def>
|
|
|
1609 <Hit_accession>2I2V_B</Hit_accession>
|
|
|
1610 <Hit_len>2904</Hit_len>
|
|
|
1611 <Hit_hsps>
|
|
|
1612 <Hsp>
|
|
|
1613 <Hsp_num>1</Hsp_num>
|
|
|
1614 <Hsp_bit-score>32.2105</Hsp_bit-score>
|
|
|
1615 <Hsp_score>16</Hsp_score>
|
|
|
1616 <Hsp_evalue>0.000791334</Hsp_evalue>
|
|
|
1617 <Hsp_query-from>1</Hsp_query-from>
|
|
|
1618 <Hsp_query-to>16</Hsp_query-to>
|
|
|
1619 <Hsp_hit-from>961</Hsp_hit-from>
|
|
|
1620 <Hsp_hit-to>976</Hsp_hit-to>
|
|
|
1621 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1622 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1623 <Hsp_identity>16</Hsp_identity>
|
|
|
1624 <Hsp_positive>16</Hsp_positive>
|
|
|
1625 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1626 <Hsp_align-len>16</Hsp_align-len>
|
|
|
1627 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
|
|
|
1628 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
|
|
|
1629 <Hsp_midline>||||||||||||||||</Hsp_midline>
|
|
|
1630 </Hsp>
|
|
|
1631 <Hsp>
|
|
|
1632 <Hsp_num>2</Hsp_num>
|
|
|
1633 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
1634 <Hsp_score>8</Hsp_score>
|
|
|
1635 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
1636 <Hsp_query-from>5</Hsp_query-from>
|
|
|
1637 <Hsp_query-to>12</Hsp_query-to>
|
|
|
1638 <Hsp_hit-from>2591</Hsp_hit-from>
|
|
|
1639 <Hsp_hit-to>2598</Hsp_hit-to>
|
|
|
1640 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1641 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1642 <Hsp_identity>8</Hsp_identity>
|
|
|
1643 <Hsp_positive>8</Hsp_positive>
|
|
|
1644 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1645 <Hsp_align-len>8</Hsp_align-len>
|
|
|
1646 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
1647 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
1648 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
1649 </Hsp>
|
|
|
1650 <Hsp>
|
|
|
1651 <Hsp_num>3</Hsp_num>
|
|
|
1652 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
1653 <Hsp_score>7</Hsp_score>
|
|
|
1654 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
1655 <Hsp_query-from>7</Hsp_query-from>
|
|
|
1656 <Hsp_query-to>13</Hsp_query-to>
|
|
|
1657 <Hsp_hit-from>839</Hsp_hit-from>
|
|
|
1658 <Hsp_hit-to>845</Hsp_hit-to>
|
|
|
1659 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1660 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1661 <Hsp_identity>7</Hsp_identity>
|
|
|
1662 <Hsp_positive>7</Hsp_positive>
|
|
|
1663 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1664 <Hsp_align-len>7</Hsp_align-len>
|
|
|
1665 <Hsp_qseq>TCGTGAA</Hsp_qseq>
|
|
|
1666 <Hsp_hseq>TCGTGAA</Hsp_hseq>
|
|
|
1667 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
1668 </Hsp>
|
|
|
1669 <Hsp>
|
|
|
1670 <Hsp_num>4</Hsp_num>
|
|
|
1671 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
1672 <Hsp_score>7</Hsp_score>
|
|
|
1673 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
1674 <Hsp_query-from>9</Hsp_query-from>
|
|
|
1675 <Hsp_query-to>15</Hsp_query-to>
|
|
|
1676 <Hsp_hit-from>2027</Hsp_hit-from>
|
|
|
1677 <Hsp_hit-to>2033</Hsp_hit-to>
|
|
|
1678 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1679 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1680 <Hsp_identity>7</Hsp_identity>
|
|
|
1681 <Hsp_positive>7</Hsp_positive>
|
|
|
1682 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1683 <Hsp_align-len>7</Hsp_align-len>
|
|
|
1684 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
1685 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
1686 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
1687 </Hsp>
|
|
|
1688 </Hit_hsps>
|
|
|
1689 </Hit>
|
|
|
1690 <Hit>
|
|
|
1691 <Hit_num>21</Hit_num>
|
|
|
1692 <Hit_id>gi|83754062|pdb|2AW4|B</Hit_id>
|
|
|
1693 <Hit_def>Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|122922241|pdb|2I2T|B Chain B, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|157836046|pdb|2QOV|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin. This File Contains The 50s Subunit Of The First 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. >gi|157836098|pdb|2QOX|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. >gi|157836150|pdb|2QOZ|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin And Neomycin. This File Contains The 50s Subunit Of The First 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. >gi|157836202|pdb|2QP1|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin And Neomycin. This File Contains The 50s Subunit Of The Second 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. >gi|158429721|pdb|2QAM|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Neomycin. This File Contains The 50s Subunit Of The First 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158429773|pdb|2QAO|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Neomycin. This File Contains The 50s Subunit Of The Second 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158429831|pdb|2QBA|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin. This File Contains The 50s Subunit Of The First 70s Ribosome, With Gentamicin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158429883|pdb|2QBC|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin. This File Contains The 50s Subunit Of The Second 70s Ribosome, With Gentamicin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158429935|pdb|2QBE|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158429988|pdb|2QBG|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158430041|pdb|2QBI|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Gentamicin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158430094|pdb|2QBK|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Gentamicin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158431394|pdb|2Z4L|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Paromomycin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Paromomycin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|158431447|pdb|2Z4N|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Paromomycin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Paromomycin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|168988732|pdb|2VHM|B Chain B, Structure Of Pdf Binding Helix In Complex With The Ribosome (Part 1 Of 4) >gi|168988763|pdb|2VHN|B Chain B, Structure Of Pdf Binding Helix In Complex With The Ribosome. (Part 2 Of 4) >gi|169404603|pdb|2RDO|B Chain B, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound >gi|197107301|pdb|3DF2|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Hygromycin B. This File Contains The 50s Subunit Of The First 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. >gi|197107353|pdb|3DF4|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Hygromycin B. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. >gi|290560329|pdb|3KCR|8 Chain 8, Ribosome-Secy Complex. This Entry 3kcr Contains 50s Ribosomal Subnit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3kc4 >gi|308198729|pdb|3ORB|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Cem-101. This File Contains The 50s Subunit Of The First 70s Ribosome Bound To Cem-101. >gi|308388007|pdb|3OFQ|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. >gi|308388038|pdb|3OFR|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 50s Subunit Of The First 70s Ribosome With Erthromycin Bound. >gi|309320096|pdb|3OFD|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Chloramphenicol. This File Contains The 50s Subunit Of The Second 70s Ribosome. >gi|329666014|pdb|3J01|8 Chain 8, Structure Of The Ribosome-Secye Complex In The Membrane Environment >gi|402550607|pdb|4GAR|A Chain A, Allosteric Control Of The Ribosome By Small-Molecule Antibiotics >gi|402550662|pdb|4GAU|A Chain A, Allosteric Control Of The Ribosome By Small-Molecule Antibiotics >gi|524934273|pdb|4KIX|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|524934341|pdb|4KIZ|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|524934404|pdb|4KJ1|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|524934483|pdb|4KJ3|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|524934551|pdb|4KJ5|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|524934613|pdb|4KJ7|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|524934678|pdb|4KJ9|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|524934740|pdb|4KJB|A Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G >gi|564730763|pdb|3J5O|A Chain A, Visualization Of Two Trnas Trapped In Transit During Ef-g-mediated Translocation (50s Subunit) >gi|597959819|pdb|3J5L|A Chain A, Structure Of The E. Coli 50s Subunit With Ermbl Nascent Chain</Hit_def>
|
|
|
1694 <Hit_accession>2AW4_B</Hit_accession>
|
|
|
1695 <Hit_len>2904</Hit_len>
|
|
|
1696 <Hit_hsps>
|
|
|
1697 <Hsp>
|
|
|
1698 <Hsp_num>1</Hsp_num>
|
|
|
1699 <Hsp_bit-score>32.2105</Hsp_bit-score>
|
|
|
1700 <Hsp_score>16</Hsp_score>
|
|
|
1701 <Hsp_evalue>0.000791334</Hsp_evalue>
|
|
|
1702 <Hsp_query-from>1</Hsp_query-from>
|
|
|
1703 <Hsp_query-to>16</Hsp_query-to>
|
|
|
1704 <Hsp_hit-from>961</Hsp_hit-from>
|
|
|
1705 <Hsp_hit-to>976</Hsp_hit-to>
|
|
|
1706 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1707 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1708 <Hsp_identity>16</Hsp_identity>
|
|
|
1709 <Hsp_positive>16</Hsp_positive>
|
|
|
1710 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1711 <Hsp_align-len>16</Hsp_align-len>
|
|
|
1712 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
|
|
|
1713 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
|
|
|
1714 <Hsp_midline>||||||||||||||||</Hsp_midline>
|
|
|
1715 </Hsp>
|
|
|
1716 <Hsp>
|
|
|
1717 <Hsp_num>2</Hsp_num>
|
|
|
1718 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
1719 <Hsp_score>8</Hsp_score>
|
|
|
1720 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
1721 <Hsp_query-from>5</Hsp_query-from>
|
|
|
1722 <Hsp_query-to>12</Hsp_query-to>
|
|
|
1723 <Hsp_hit-from>2591</Hsp_hit-from>
|
|
|
1724 <Hsp_hit-to>2598</Hsp_hit-to>
|
|
|
1725 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1726 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1727 <Hsp_identity>8</Hsp_identity>
|
|
|
1728 <Hsp_positive>8</Hsp_positive>
|
|
|
1729 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1730 <Hsp_align-len>8</Hsp_align-len>
|
|
|
1731 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
1732 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
1733 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
1734 </Hsp>
|
|
|
1735 <Hsp>
|
|
|
1736 <Hsp_num>3</Hsp_num>
|
|
|
1737 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
1738 <Hsp_score>7</Hsp_score>
|
|
|
1739 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
1740 <Hsp_query-from>7</Hsp_query-from>
|
|
|
1741 <Hsp_query-to>13</Hsp_query-to>
|
|
|
1742 <Hsp_hit-from>839</Hsp_hit-from>
|
|
|
1743 <Hsp_hit-to>845</Hsp_hit-to>
|
|
|
1744 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1745 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1746 <Hsp_identity>7</Hsp_identity>
|
|
|
1747 <Hsp_positive>7</Hsp_positive>
|
|
|
1748 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1749 <Hsp_align-len>7</Hsp_align-len>
|
|
|
1750 <Hsp_qseq>TCGTGAA</Hsp_qseq>
|
|
|
1751 <Hsp_hseq>TCGTGAA</Hsp_hseq>
|
|
|
1752 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
1753 </Hsp>
|
|
|
1754 <Hsp>
|
|
|
1755 <Hsp_num>4</Hsp_num>
|
|
|
1756 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
1757 <Hsp_score>7</Hsp_score>
|
|
|
1758 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
1759 <Hsp_query-from>9</Hsp_query-from>
|
|
|
1760 <Hsp_query-to>15</Hsp_query-to>
|
|
|
1761 <Hsp_hit-from>2027</Hsp_hit-from>
|
|
|
1762 <Hsp_hit-to>2033</Hsp_hit-to>
|
|
|
1763 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1764 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1765 <Hsp_identity>7</Hsp_identity>
|
|
|
1766 <Hsp_positive>7</Hsp_positive>
|
|
|
1767 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1768 <Hsp_align-len>7</Hsp_align-len>
|
|
|
1769 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
1770 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
1771 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
1772 </Hsp>
|
|
|
1773 </Hit_hsps>
|
|
|
1774 </Hit>
|
|
|
1775 <Hit>
|
|
|
1776 <Hit_num>22</Hit_num>
|
|
|
1777 <Hit_id>gi|83754118|pdb|2AWB|B</Hit_id>
|
|
|
1778 <Hit_def>Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|126031747|pdb|2J28|B Chain B, Model Of E. Coli Srp Bound To 70s Rncs >gi|157880574|pdb|1VS8|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.</Hit_def>
|
|
|
1779 <Hit_accession>2AWB_B</Hit_accession>
|
|
|
1780 <Hit_len>2904</Hit_len>
|
|
|
1781 <Hit_hsps>
|
|
|
1782 <Hsp>
|
|
|
1783 <Hsp_num>1</Hsp_num>
|
|
|
1784 <Hsp_bit-score>32.2105</Hsp_bit-score>
|
|
|
1785 <Hsp_score>16</Hsp_score>
|
|
|
1786 <Hsp_evalue>0.000791334</Hsp_evalue>
|
|
|
1787 <Hsp_query-from>1</Hsp_query-from>
|
|
|
1788 <Hsp_query-to>16</Hsp_query-to>
|
|
|
1789 <Hsp_hit-from>961</Hsp_hit-from>
|
|
|
1790 <Hsp_hit-to>976</Hsp_hit-to>
|
|
|
1791 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1792 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1793 <Hsp_identity>16</Hsp_identity>
|
|
|
1794 <Hsp_positive>16</Hsp_positive>
|
|
|
1795 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1796 <Hsp_align-len>16</Hsp_align-len>
|
|
|
1797 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
|
|
|
1798 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
|
|
|
1799 <Hsp_midline>||||||||||||||||</Hsp_midline>
|
|
|
1800 </Hsp>
|
|
|
1801 <Hsp>
|
|
|
1802 <Hsp_num>2</Hsp_num>
|
|
|
1803 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
1804 <Hsp_score>8</Hsp_score>
|
|
|
1805 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
1806 <Hsp_query-from>5</Hsp_query-from>
|
|
|
1807 <Hsp_query-to>12</Hsp_query-to>
|
|
|
1808 <Hsp_hit-from>2591</Hsp_hit-from>
|
|
|
1809 <Hsp_hit-to>2598</Hsp_hit-to>
|
|
|
1810 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1811 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1812 <Hsp_identity>8</Hsp_identity>
|
|
|
1813 <Hsp_positive>8</Hsp_positive>
|
|
|
1814 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1815 <Hsp_align-len>8</Hsp_align-len>
|
|
|
1816 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
1817 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
1818 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
1819 </Hsp>
|
|
|
1820 <Hsp>
|
|
|
1821 <Hsp_num>3</Hsp_num>
|
|
|
1822 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
1823 <Hsp_score>7</Hsp_score>
|
|
|
1824 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
1825 <Hsp_query-from>7</Hsp_query-from>
|
|
|
1826 <Hsp_query-to>13</Hsp_query-to>
|
|
|
1827 <Hsp_hit-from>839</Hsp_hit-from>
|
|
|
1828 <Hsp_hit-to>845</Hsp_hit-to>
|
|
|
1829 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1830 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1831 <Hsp_identity>7</Hsp_identity>
|
|
|
1832 <Hsp_positive>7</Hsp_positive>
|
|
|
1833 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1834 <Hsp_align-len>7</Hsp_align-len>
|
|
|
1835 <Hsp_qseq>TCGTGAA</Hsp_qseq>
|
|
|
1836 <Hsp_hseq>TCGTGAA</Hsp_hseq>
|
|
|
1837 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
1838 </Hsp>
|
|
|
1839 <Hsp>
|
|
|
1840 <Hsp_num>4</Hsp_num>
|
|
|
1841 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
1842 <Hsp_score>7</Hsp_score>
|
|
|
1843 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
1844 <Hsp_query-from>9</Hsp_query-from>
|
|
|
1845 <Hsp_query-to>15</Hsp_query-to>
|
|
|
1846 <Hsp_hit-from>2027</Hsp_hit-from>
|
|
|
1847 <Hsp_hit-to>2033</Hsp_hit-to>
|
|
|
1848 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1849 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1850 <Hsp_identity>7</Hsp_identity>
|
|
|
1851 <Hsp_positive>7</Hsp_positive>
|
|
|
1852 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1853 <Hsp_align-len>7</Hsp_align-len>
|
|
|
1854 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
1855 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
1856 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
1857 </Hsp>
|
|
|
1858 </Hit_hsps>
|
|
|
1859 </Hit>
|
|
|
1860 <Hit>
|
|
|
1861 <Hit_num>23</Hit_num>
|
|
|
1862 <Hit_id>gi|157880571|pdb|1VS6|B</Hit_id>
|
|
|
1863 <Hit_def>Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. >gi|209870354|pdb|3BBX|B Chain B, The Hsp15 Protein Fitted Into The Low Resolution Cryo-Em Map 50s.Nc-Trna.Hsp15 Complex >gi|222447037|pdb|3DG0|B Chain B, Coordinates Of 16s And 23s Rrnas Fitted Into The Cryo-Em Map Of Ef-G-Bound Translocation Complex >gi|222447039|pdb|3DG2|B Chain B, Coordinates Of 16s And 23s Rrnas Fitted Into The Cryo-Em Map Of A Pretranslocation Complex >gi|222447041|pdb|3DG4|B Chain B, Coordinates Of 16s And 23s Rrnas Fitted Into The Cryo-Em Map Of Rf1-Bound Termination Complex >gi|222447043|pdb|3DG5|B Chain B, Coordinates Of 16s And 23s Rrnas Fitted Into The Cryo-Em Map Of Rf3-Bound Termination Complex >gi|308198355|pdb|1VT2|A Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Cem-101. This File Contains The 50s Subunit Of The Second 70s Ribosome.</Hit_def>
|
|
|
1864 <Hit_accession>1VS6_B</Hit_accession>
|
|
|
1865 <Hit_len>2904</Hit_len>
|
|
|
1866 <Hit_hsps>
|
|
|
1867 <Hsp>
|
|
|
1868 <Hsp_num>1</Hsp_num>
|
|
|
1869 <Hsp_bit-score>32.2105</Hsp_bit-score>
|
|
|
1870 <Hsp_score>16</Hsp_score>
|
|
|
1871 <Hsp_evalue>0.000791334</Hsp_evalue>
|
|
|
1872 <Hsp_query-from>1</Hsp_query-from>
|
|
|
1873 <Hsp_query-to>16</Hsp_query-to>
|
|
|
1874 <Hsp_hit-from>961</Hsp_hit-from>
|
|
|
1875 <Hsp_hit-to>976</Hsp_hit-to>
|
|
|
1876 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1877 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1878 <Hsp_identity>16</Hsp_identity>
|
|
|
1879 <Hsp_positive>16</Hsp_positive>
|
|
|
1880 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1881 <Hsp_align-len>16</Hsp_align-len>
|
|
|
1882 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
|
|
|
1883 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
|
|
|
1884 <Hsp_midline>||||||||||||||||</Hsp_midline>
|
|
|
1885 </Hsp>
|
|
|
1886 <Hsp>
|
|
|
1887 <Hsp_num>2</Hsp_num>
|
|
|
1888 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
1889 <Hsp_score>8</Hsp_score>
|
|
|
1890 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
1891 <Hsp_query-from>5</Hsp_query-from>
|
|
|
1892 <Hsp_query-to>12</Hsp_query-to>
|
|
|
1893 <Hsp_hit-from>2591</Hsp_hit-from>
|
|
|
1894 <Hsp_hit-to>2598</Hsp_hit-to>
|
|
|
1895 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1896 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1897 <Hsp_identity>8</Hsp_identity>
|
|
|
1898 <Hsp_positive>8</Hsp_positive>
|
|
|
1899 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1900 <Hsp_align-len>8</Hsp_align-len>
|
|
|
1901 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
1902 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
1903 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
1904 </Hsp>
|
|
|
1905 <Hsp>
|
|
|
1906 <Hsp_num>3</Hsp_num>
|
|
|
1907 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
1908 <Hsp_score>7</Hsp_score>
|
|
|
1909 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
1910 <Hsp_query-from>7</Hsp_query-from>
|
|
|
1911 <Hsp_query-to>13</Hsp_query-to>
|
|
|
1912 <Hsp_hit-from>839</Hsp_hit-from>
|
|
|
1913 <Hsp_hit-to>845</Hsp_hit-to>
|
|
|
1914 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1915 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1916 <Hsp_identity>7</Hsp_identity>
|
|
|
1917 <Hsp_positive>7</Hsp_positive>
|
|
|
1918 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1919 <Hsp_align-len>7</Hsp_align-len>
|
|
|
1920 <Hsp_qseq>TCGTGAA</Hsp_qseq>
|
|
|
1921 <Hsp_hseq>TCGTGAA</Hsp_hseq>
|
|
|
1922 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
1923 </Hsp>
|
|
|
1924 <Hsp>
|
|
|
1925 <Hsp_num>4</Hsp_num>
|
|
|
1926 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
1927 <Hsp_score>7</Hsp_score>
|
|
|
1928 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
1929 <Hsp_query-from>9</Hsp_query-from>
|
|
|
1930 <Hsp_query-to>15</Hsp_query-to>
|
|
|
1931 <Hsp_hit-from>2027</Hsp_hit-from>
|
|
|
1932 <Hsp_hit-to>2033</Hsp_hit-to>
|
|
|
1933 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1934 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1935 <Hsp_identity>7</Hsp_identity>
|
|
|
1936 <Hsp_positive>7</Hsp_positive>
|
|
|
1937 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1938 <Hsp_align-len>7</Hsp_align-len>
|
|
|
1939 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
1940 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
1941 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
1942 </Hsp>
|
|
|
1943 </Hit_hsps>
|
|
|
1944 </Hit>
|
|
|
1945 <Hit>
|
|
|
1946 <Hit_num>24</Hit_num>
|
|
|
1947 <Hit_id>gi|33357900|pdb|1P85|0</Hit_id>
|
|
|
1948 <Hit_def>Chain 0, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome >gi|33357927|pdb|1P86|0 Chain 0, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Initiation-Like State Of E. Coli 70s Ribosome</Hit_def>
|
|
|
1949 <Hit_accession>1P85_0</Hit_accession>
|
|
|
1950 <Hit_len>2904</Hit_len>
|
|
|
1951 <Hit_hsps>
|
|
|
1952 <Hsp>
|
|
|
1953 <Hsp_num>1</Hsp_num>
|
|
|
1954 <Hsp_bit-score>32.2105</Hsp_bit-score>
|
|
|
1955 <Hsp_score>16</Hsp_score>
|
|
|
1956 <Hsp_evalue>0.000791334</Hsp_evalue>
|
|
|
1957 <Hsp_query-from>1</Hsp_query-from>
|
|
|
1958 <Hsp_query-to>16</Hsp_query-to>
|
|
|
1959 <Hsp_hit-from>961</Hsp_hit-from>
|
|
|
1960 <Hsp_hit-to>976</Hsp_hit-to>
|
|
|
1961 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1962 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1963 <Hsp_identity>16</Hsp_identity>
|
|
|
1964 <Hsp_positive>16</Hsp_positive>
|
|
|
1965 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1966 <Hsp_align-len>16</Hsp_align-len>
|
|
|
1967 <Hsp_qseq>CGTCCGTCGTGAAGAG</Hsp_qseq>
|
|
|
1968 <Hsp_hseq>CGTCCGTCGTGAAGAG</Hsp_hseq>
|
|
|
1969 <Hsp_midline>||||||||||||||||</Hsp_midline>
|
|
|
1970 </Hsp>
|
|
|
1971 <Hsp>
|
|
|
1972 <Hsp_num>2</Hsp_num>
|
|
|
1973 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
1974 <Hsp_score>8</Hsp_score>
|
|
|
1975 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
1976 <Hsp_query-from>5</Hsp_query-from>
|
|
|
1977 <Hsp_query-to>12</Hsp_query-to>
|
|
|
1978 <Hsp_hit-from>2591</Hsp_hit-from>
|
|
|
1979 <Hsp_hit-to>2598</Hsp_hit-to>
|
|
|
1980 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
1981 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
1982 <Hsp_identity>8</Hsp_identity>
|
|
|
1983 <Hsp_positive>8</Hsp_positive>
|
|
|
1984 <Hsp_gaps>0</Hsp_gaps>
|
|
|
1985 <Hsp_align-len>8</Hsp_align-len>
|
|
|
1986 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
1987 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
1988 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
1989 </Hsp>
|
|
|
1990 <Hsp>
|
|
|
1991 <Hsp_num>3</Hsp_num>
|
|
|
1992 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
1993 <Hsp_score>7</Hsp_score>
|
|
|
1994 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
1995 <Hsp_query-from>7</Hsp_query-from>
|
|
|
1996 <Hsp_query-to>13</Hsp_query-to>
|
|
|
1997 <Hsp_hit-from>839</Hsp_hit-from>
|
|
|
1998 <Hsp_hit-to>845</Hsp_hit-to>
|
|
|
1999 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2000 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2001 <Hsp_identity>7</Hsp_identity>
|
|
|
2002 <Hsp_positive>7</Hsp_positive>
|
|
|
2003 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2004 <Hsp_align-len>7</Hsp_align-len>
|
|
|
2005 <Hsp_qseq>TCGTGAA</Hsp_qseq>
|
|
|
2006 <Hsp_hseq>TCGTGAA</Hsp_hseq>
|
|
|
2007 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
2008 </Hsp>
|
|
|
2009 <Hsp>
|
|
|
2010 <Hsp_num>4</Hsp_num>
|
|
|
2011 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
2012 <Hsp_score>7</Hsp_score>
|
|
|
2013 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
2014 <Hsp_query-from>9</Hsp_query-from>
|
|
|
2015 <Hsp_query-to>15</Hsp_query-to>
|
|
|
2016 <Hsp_hit-from>2027</Hsp_hit-from>
|
|
|
2017 <Hsp_hit-to>2033</Hsp_hit-to>
|
|
|
2018 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2019 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2020 <Hsp_identity>7</Hsp_identity>
|
|
|
2021 <Hsp_positive>7</Hsp_positive>
|
|
|
2022 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2023 <Hsp_align-len>7</Hsp_align-len>
|
|
|
2024 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
2025 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
2026 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
2027 </Hsp>
|
|
|
2028 </Hit_hsps>
|
|
|
2029 </Hit>
|
|
|
2030 <Hit>
|
|
|
2031 <Hit_num>25</Hit_num>
|
|
|
2032 <Hit_id>gi|7767146|pdb|1C2W|B</Hit_id>
|
|
|
2033 <Hit_def>Chain B, 23s Rrna Structure Fitted To A Cryo-Electron Microscopic Map At 7.5 Angstroms Resolution</Hit_def>
|
|
|
2034 <Hit_accession>1C2W_B</Hit_accession>
|
|
|
2035 <Hit_len>2904</Hit_len>
|
|
|
2036 <Hit_hsps>
|
|
|
2037 <Hsp>
|
|
|
2038 <Hsp_num>1</Hsp_num>
|
|
|
2039 <Hsp_bit-score>26.2635</Hsp_bit-score>
|
|
|
2040 <Hsp_score>13</Hsp_score>
|
|
|
2041 <Hsp_evalue>0.0488207</Hsp_evalue>
|
|
|
2042 <Hsp_query-from>1</Hsp_query-from>
|
|
|
2043 <Hsp_query-to>13</Hsp_query-to>
|
|
|
2044 <Hsp_hit-from>961</Hsp_hit-from>
|
|
|
2045 <Hsp_hit-to>973</Hsp_hit-to>
|
|
|
2046 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2047 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2048 <Hsp_identity>13</Hsp_identity>
|
|
|
2049 <Hsp_positive>13</Hsp_positive>
|
|
|
2050 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2051 <Hsp_align-len>13</Hsp_align-len>
|
|
|
2052 <Hsp_qseq>CGTCCGTCGTGAA</Hsp_qseq>
|
|
|
2053 <Hsp_hseq>CGTCCGTCGTGAA</Hsp_hseq>
|
|
|
2054 <Hsp_midline>|||||||||||||</Hsp_midline>
|
|
|
2055 </Hsp>
|
|
|
2056 <Hsp>
|
|
|
2057 <Hsp_num>2</Hsp_num>
|
|
|
2058 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
2059 <Hsp_score>7</Hsp_score>
|
|
|
2060 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
2061 <Hsp_query-from>7</Hsp_query-from>
|
|
|
2062 <Hsp_query-to>13</Hsp_query-to>
|
|
|
2063 <Hsp_hit-from>839</Hsp_hit-from>
|
|
|
2064 <Hsp_hit-to>845</Hsp_hit-to>
|
|
|
2065 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2066 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2067 <Hsp_identity>7</Hsp_identity>
|
|
|
2068 <Hsp_positive>7</Hsp_positive>
|
|
|
2069 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2070 <Hsp_align-len>7</Hsp_align-len>
|
|
|
2071 <Hsp_qseq>TCGTGAA</Hsp_qseq>
|
|
|
2072 <Hsp_hseq>TCGTGAA</Hsp_hseq>
|
|
|
2073 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
2074 </Hsp>
|
|
|
2075 </Hit_hsps>
|
|
|
2076 </Hit>
|
|
|
2077 <Hit>
|
|
|
2078 <Hit_num>26</Hit_num>
|
|
|
2079 <Hit_id>gi|582044940|pdb|3J62|AA</Hit_id>
|
|
|
2080 <Hit_def>Chain a, Model Of The Large Subunit Rna Based On A 5.5 A Cryo-em Map Of Triticum Aestivum Translating 80s Ribosome</Hit_def>
|
|
|
2081 <Hit_accession>3J62_AA</Hit_accession>
|
|
|
2082 <Hit_len>3391</Hit_len>
|
|
|
2083 <Hit_hsps>
|
|
|
2084 <Hsp>
|
|
|
2085 <Hsp_num>1</Hsp_num>
|
|
|
2086 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
2087 <Hsp_score>9</Hsp_score>
|
|
|
2088 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
2089 <Hsp_query-from>4</Hsp_query-from>
|
|
|
2090 <Hsp_query-to>12</Hsp_query-to>
|
|
|
2091 <Hsp_hit-from>2961</Hsp_hit-from>
|
|
|
2092 <Hsp_hit-to>2969</Hsp_hit-to>
|
|
|
2093 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2094 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2095 <Hsp_identity>9</Hsp_identity>
|
|
|
2096 <Hsp_positive>9</Hsp_positive>
|
|
|
2097 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2098 <Hsp_align-len>9</Hsp_align-len>
|
|
|
2099 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
2100 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
2101 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
2102 </Hsp>
|
|
|
2103 <Hsp>
|
|
|
2104 <Hsp_num>2</Hsp_num>
|
|
|
2105 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
2106 <Hsp_score>8</Hsp_score>
|
|
|
2107 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
2108 <Hsp_query-from>2</Hsp_query-from>
|
|
|
2109 <Hsp_query-to>9</Hsp_query-to>
|
|
|
2110 <Hsp_hit-from>177</Hsp_hit-from>
|
|
|
2111 <Hsp_hit-to>170</Hsp_hit-to>
|
|
|
2112 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2113 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
2114 <Hsp_identity>8</Hsp_identity>
|
|
|
2115 <Hsp_positive>8</Hsp_positive>
|
|
|
2116 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2117 <Hsp_align-len>8</Hsp_align-len>
|
|
|
2118 <Hsp_qseq>GTCCGTCG</Hsp_qseq>
|
|
|
2119 <Hsp_hseq>GTCCGTCG</Hsp_hseq>
|
|
|
2120 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
2121 </Hsp>
|
|
|
2122 <Hsp>
|
|
|
2123 <Hsp_num>3</Hsp_num>
|
|
|
2124 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
2125 <Hsp_score>7</Hsp_score>
|
|
|
2126 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
2127 <Hsp_query-from>4</Hsp_query-from>
|
|
|
2128 <Hsp_query-to>10</Hsp_query-to>
|
|
|
2129 <Hsp_hit-from>553</Hsp_hit-from>
|
|
|
2130 <Hsp_hit-to>559</Hsp_hit-to>
|
|
|
2131 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2132 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2133 <Hsp_identity>7</Hsp_identity>
|
|
|
2134 <Hsp_positive>7</Hsp_positive>
|
|
|
2135 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2136 <Hsp_align-len>7</Hsp_align-len>
|
|
|
2137 <Hsp_qseq>CCGTCGT</Hsp_qseq>
|
|
|
2138 <Hsp_hseq>CCGTCGT</Hsp_hseq>
|
|
|
2139 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
2140 </Hsp>
|
|
|
2141 <Hsp>
|
|
|
2142 <Hsp_num>4</Hsp_num>
|
|
|
2143 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
2144 <Hsp_score>7</Hsp_score>
|
|
|
2145 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
2146 <Hsp_query-from>2</Hsp_query-from>
|
|
|
2147 <Hsp_query-to>8</Hsp_query-to>
|
|
|
2148 <Hsp_hit-from>2048</Hsp_hit-from>
|
|
|
2149 <Hsp_hit-to>2042</Hsp_hit-to>
|
|
|
2150 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2151 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
2152 <Hsp_identity>7</Hsp_identity>
|
|
|
2153 <Hsp_positive>7</Hsp_positive>
|
|
|
2154 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2155 <Hsp_align-len>7</Hsp_align-len>
|
|
|
2156 <Hsp_qseq>GTCCGTC</Hsp_qseq>
|
|
|
2157 <Hsp_hseq>GTCCGTC</Hsp_hseq>
|
|
|
2158 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
2159 </Hsp>
|
|
|
2160 <Hsp>
|
|
|
2161 <Hsp_num>5</Hsp_num>
|
|
|
2162 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
2163 <Hsp_score>7</Hsp_score>
|
|
|
2164 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
2165 <Hsp_query-from>9</Hsp_query-from>
|
|
|
2166 <Hsp_query-to>15</Hsp_query-to>
|
|
|
2167 <Hsp_hit-from>2211</Hsp_hit-from>
|
|
|
2168 <Hsp_hit-to>2217</Hsp_hit-to>
|
|
|
2169 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2170 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2171 <Hsp_identity>7</Hsp_identity>
|
|
|
2172 <Hsp_positive>7</Hsp_positive>
|
|
|
2173 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2174 <Hsp_align-len>7</Hsp_align-len>
|
|
|
2175 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
2176 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
2177 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
2178 </Hsp>
|
|
|
2179 </Hit_hsps>
|
|
|
2180 </Hit>
|
|
|
2181 <Hit>
|
|
|
2182 <Hit_num>27</Hit_num>
|
|
|
2183 <Hit_id>gi|567755268|pdb|4CE4|A</Hit_id>
|
|
|
2184 <Hit_def>Chain A, 39s Large Subunit Of The Porcine Mitochondrial Ribosome</Hit_def>
|
|
|
2185 <Hit_accession>4CE4_A</Hit_accession>
|
|
|
2186 <Hit_len>1570</Hit_len>
|
|
|
2187 <Hit_hsps>
|
|
|
2188 <Hsp>
|
|
|
2189 <Hsp_num>1</Hsp_num>
|
|
|
2190 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
2191 <Hsp_score>9</Hsp_score>
|
|
|
2192 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
2193 <Hsp_query-from>8</Hsp_query-from>
|
|
|
2194 <Hsp_query-to>16</Hsp_query-to>
|
|
|
2195 <Hsp_hit-from>1020</Hsp_hit-from>
|
|
|
2196 <Hsp_hit-to>1028</Hsp_hit-to>
|
|
|
2197 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2198 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2199 <Hsp_identity>9</Hsp_identity>
|
|
|
2200 <Hsp_positive>9</Hsp_positive>
|
|
|
2201 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2202 <Hsp_align-len>9</Hsp_align-len>
|
|
|
2203 <Hsp_qseq>CGTGAAGAG</Hsp_qseq>
|
|
|
2204 <Hsp_hseq>CGTGAAGAG</Hsp_hseq>
|
|
|
2205 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
2206 </Hsp>
|
|
|
2207 </Hit_hsps>
|
|
|
2208 </Hit>
|
|
|
2209 <Hit>
|
|
|
2210 <Hit_num>28</Hit_num>
|
|
|
2211 <Hit_id>gi|558704783|pdb|4BYP|5</Hit_id>
|
|
|
2212 <Hit_def>Chain 5, Cryo-em Reconstruction Of The 80s-eif5b-met-itrnamet Eukaryotic Translation Initiation Complex</Hit_def>
|
|
|
2213 <Hit_accession>4BYP_5</Hit_accession>
|
|
|
2214 <Hit_len>3396</Hit_len>
|
|
|
2215 <Hit_hsps>
|
|
|
2216 <Hsp>
|
|
|
2217 <Hsp_num>1</Hsp_num>
|
|
|
2218 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
2219 <Hsp_score>9</Hsp_score>
|
|
|
2220 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
2221 <Hsp_query-from>4</Hsp_query-from>
|
|
|
2222 <Hsp_query-to>12</Hsp_query-to>
|
|
|
2223 <Hsp_hit-from>2959</Hsp_hit-from>
|
|
|
2224 <Hsp_hit-to>2967</Hsp_hit-to>
|
|
|
2225 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2226 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2227 <Hsp_identity>9</Hsp_identity>
|
|
|
2228 <Hsp_positive>9</Hsp_positive>
|
|
|
2229 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2230 <Hsp_align-len>9</Hsp_align-len>
|
|
|
2231 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
2232 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
2233 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
2234 </Hsp>
|
|
|
2235 <Hsp>
|
|
|
2236 <Hsp_num>2</Hsp_num>
|
|
|
2237 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
2238 <Hsp_score>8</Hsp_score>
|
|
|
2239 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
2240 <Hsp_query-from>8</Hsp_query-from>
|
|
|
2241 <Hsp_query-to>15</Hsp_query-to>
|
|
|
2242 <Hsp_hit-from>1634</Hsp_hit-from>
|
|
|
2243 <Hsp_hit-to>1627</Hsp_hit-to>
|
|
|
2244 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2245 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
2246 <Hsp_identity>8</Hsp_identity>
|
|
|
2247 <Hsp_positive>8</Hsp_positive>
|
|
|
2248 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2249 <Hsp_align-len>8</Hsp_align-len>
|
|
|
2250 <Hsp_qseq>CGTGAAGA</Hsp_qseq>
|
|
|
2251 <Hsp_hseq>CGTGAAGA</Hsp_hseq>
|
|
|
2252 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
2253 </Hsp>
|
|
|
2254 <Hsp>
|
|
|
2255 <Hsp_num>3</Hsp_num>
|
|
|
2256 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
2257 <Hsp_score>8</Hsp_score>
|
|
|
2258 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
2259 <Hsp_query-from>9</Hsp_query-from>
|
|
|
2260 <Hsp_query-to>16</Hsp_query-to>
|
|
|
2261 <Hsp_hit-from>2435</Hsp_hit-from>
|
|
|
2262 <Hsp_hit-to>2442</Hsp_hit-to>
|
|
|
2263 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2264 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2265 <Hsp_identity>8</Hsp_identity>
|
|
|
2266 <Hsp_positive>8</Hsp_positive>
|
|
|
2267 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2268 <Hsp_align-len>8</Hsp_align-len>
|
|
|
2269 <Hsp_qseq>GTGAAGAG</Hsp_qseq>
|
|
|
2270 <Hsp_hseq>GTGAAGAG</Hsp_hseq>
|
|
|
2271 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
2272 </Hsp>
|
|
|
2273 <Hsp>
|
|
|
2274 <Hsp_num>4</Hsp_num>
|
|
|
2275 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
2276 <Hsp_score>7</Hsp_score>
|
|
|
2277 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
2278 <Hsp_query-from>10</Hsp_query-from>
|
|
|
2279 <Hsp_query-to>16</Hsp_query-to>
|
|
|
2280 <Hsp_hit-from>1100</Hsp_hit-from>
|
|
|
2281 <Hsp_hit-to>1106</Hsp_hit-to>
|
|
|
2282 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2283 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2284 <Hsp_identity>7</Hsp_identity>
|
|
|
2285 <Hsp_positive>7</Hsp_positive>
|
|
|
2286 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2287 <Hsp_align-len>7</Hsp_align-len>
|
|
|
2288 <Hsp_qseq>TGAAGAG</Hsp_qseq>
|
|
|
2289 <Hsp_hseq>TGAAGAG</Hsp_hseq>
|
|
|
2290 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
2291 </Hsp>
|
|
|
2292 <Hsp>
|
|
|
2293 <Hsp_num>5</Hsp_num>
|
|
|
2294 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
2295 <Hsp_score>7</Hsp_score>
|
|
|
2296 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
2297 <Hsp_query-from>9</Hsp_query-from>
|
|
|
2298 <Hsp_query-to>15</Hsp_query-to>
|
|
|
2299 <Hsp_hit-from>2216</Hsp_hit-from>
|
|
|
2300 <Hsp_hit-to>2222</Hsp_hit-to>
|
|
|
2301 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2302 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2303 <Hsp_identity>7</Hsp_identity>
|
|
|
2304 <Hsp_positive>7</Hsp_positive>
|
|
|
2305 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2306 <Hsp_align-len>7</Hsp_align-len>
|
|
|
2307 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
2308 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
2309 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
2310 </Hsp>
|
|
|
2311 </Hit_hsps>
|
|
|
2312 </Hit>
|
|
|
2313 <Hit>
|
|
|
2314 <Hit_num>29</Hit_num>
|
|
|
2315 <Hit_id>gi|558704825|pdb|4BYW|5</Hit_id>
|
|
|
2316 <Hit_def>Chain 5, Cryo-em Reconstruction Of The 80s-eif5b-met-itrnamet Eukaryotic Translation Initiation Complex</Hit_def>
|
|
|
2317 <Hit_accession>4BYW_5</Hit_accession>
|
|
|
2318 <Hit_len>3396</Hit_len>
|
|
|
2319 <Hit_hsps>
|
|
|
2320 <Hsp>
|
|
|
2321 <Hsp_num>1</Hsp_num>
|
|
|
2322 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
2323 <Hsp_score>9</Hsp_score>
|
|
|
2324 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
2325 <Hsp_query-from>4</Hsp_query-from>
|
|
|
2326 <Hsp_query-to>12</Hsp_query-to>
|
|
|
2327 <Hsp_hit-from>2959</Hsp_hit-from>
|
|
|
2328 <Hsp_hit-to>2967</Hsp_hit-to>
|
|
|
2329 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2330 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2331 <Hsp_identity>9</Hsp_identity>
|
|
|
2332 <Hsp_positive>9</Hsp_positive>
|
|
|
2333 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2334 <Hsp_align-len>9</Hsp_align-len>
|
|
|
2335 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
2336 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
2337 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
2338 </Hsp>
|
|
|
2339 <Hsp>
|
|
|
2340 <Hsp_num>2</Hsp_num>
|
|
|
2341 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
2342 <Hsp_score>8</Hsp_score>
|
|
|
2343 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
2344 <Hsp_query-from>8</Hsp_query-from>
|
|
|
2345 <Hsp_query-to>15</Hsp_query-to>
|
|
|
2346 <Hsp_hit-from>1634</Hsp_hit-from>
|
|
|
2347 <Hsp_hit-to>1627</Hsp_hit-to>
|
|
|
2348 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2349 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
2350 <Hsp_identity>8</Hsp_identity>
|
|
|
2351 <Hsp_positive>8</Hsp_positive>
|
|
|
2352 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2353 <Hsp_align-len>8</Hsp_align-len>
|
|
|
2354 <Hsp_qseq>CGTGAAGA</Hsp_qseq>
|
|
|
2355 <Hsp_hseq>CGTGAAGA</Hsp_hseq>
|
|
|
2356 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
2357 </Hsp>
|
|
|
2358 <Hsp>
|
|
|
2359 <Hsp_num>3</Hsp_num>
|
|
|
2360 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
2361 <Hsp_score>8</Hsp_score>
|
|
|
2362 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
2363 <Hsp_query-from>9</Hsp_query-from>
|
|
|
2364 <Hsp_query-to>16</Hsp_query-to>
|
|
|
2365 <Hsp_hit-from>2435</Hsp_hit-from>
|
|
|
2366 <Hsp_hit-to>2442</Hsp_hit-to>
|
|
|
2367 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2368 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2369 <Hsp_identity>8</Hsp_identity>
|
|
|
2370 <Hsp_positive>8</Hsp_positive>
|
|
|
2371 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2372 <Hsp_align-len>8</Hsp_align-len>
|
|
|
2373 <Hsp_qseq>GTGAAGAG</Hsp_qseq>
|
|
|
2374 <Hsp_hseq>GTGAAGAG</Hsp_hseq>
|
|
|
2375 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
2376 </Hsp>
|
|
|
2377 <Hsp>
|
|
|
2378 <Hsp_num>4</Hsp_num>
|
|
|
2379 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
2380 <Hsp_score>7</Hsp_score>
|
|
|
2381 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
2382 <Hsp_query-from>10</Hsp_query-from>
|
|
|
2383 <Hsp_query-to>16</Hsp_query-to>
|
|
|
2384 <Hsp_hit-from>1100</Hsp_hit-from>
|
|
|
2385 <Hsp_hit-to>1106</Hsp_hit-to>
|
|
|
2386 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2387 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2388 <Hsp_identity>7</Hsp_identity>
|
|
|
2389 <Hsp_positive>7</Hsp_positive>
|
|
|
2390 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2391 <Hsp_align-len>7</Hsp_align-len>
|
|
|
2392 <Hsp_qseq>TGAAGAG</Hsp_qseq>
|
|
|
2393 <Hsp_hseq>TGAAGAG</Hsp_hseq>
|
|
|
2394 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
2395 </Hsp>
|
|
|
2396 <Hsp>
|
|
|
2397 <Hsp_num>5</Hsp_num>
|
|
|
2398 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
2399 <Hsp_score>7</Hsp_score>
|
|
|
2400 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
2401 <Hsp_query-from>9</Hsp_query-from>
|
|
|
2402 <Hsp_query-to>15</Hsp_query-to>
|
|
|
2403 <Hsp_hit-from>2216</Hsp_hit-from>
|
|
|
2404 <Hsp_hit-to>2222</Hsp_hit-to>
|
|
|
2405 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2406 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2407 <Hsp_identity>7</Hsp_identity>
|
|
|
2408 <Hsp_positive>7</Hsp_positive>
|
|
|
2409 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2410 <Hsp_align-len>7</Hsp_align-len>
|
|
|
2411 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
2412 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
2413 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
2414 </Hsp>
|
|
|
2415 </Hit_hsps>
|
|
|
2416 </Hit>
|
|
|
2417 <Hit>
|
|
|
2418 <Hit_num>30</Hit_num>
|
|
|
2419 <Hit_id>gi|551701574|pdb|3J44|1</Hit_id>
|
|
|
2420 <Hit_def>Chain 1, Structure Of The Methanococcus Jannaschii Ribosome-secyebeta Channel Complex (50s Ribosomal Subunit)</Hit_def>
|
|
|
2421 <Hit_accession>3J44_1</Hit_accession>
|
|
|
2422 <Hit_len>3049</Hit_len>
|
|
|
2423 <Hit_hsps>
|
|
|
2424 <Hsp>
|
|
|
2425 <Hsp_num>1</Hsp_num>
|
|
|
2426 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
2427 <Hsp_score>9</Hsp_score>
|
|
|
2428 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
2429 <Hsp_query-from>1</Hsp_query-from>
|
|
|
2430 <Hsp_query-to>13</Hsp_query-to>
|
|
|
2431 <Hsp_hit-from>651</Hsp_hit-from>
|
|
|
2432 <Hsp_hit-to>663</Hsp_hit-to>
|
|
|
2433 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2434 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2435 <Hsp_identity>12</Hsp_identity>
|
|
|
2436 <Hsp_positive>12</Hsp_positive>
|
|
|
2437 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2438 <Hsp_align-len>13</Hsp_align-len>
|
|
|
2439 <Hsp_qseq>CGTCCGTCGTGAA</Hsp_qseq>
|
|
|
2440 <Hsp_hseq>CGTCCGTCTTGAA</Hsp_hseq>
|
|
|
2441 <Hsp_midline>|||||||| ||||</Hsp_midline>
|
|
|
2442 </Hsp>
|
|
|
2443 <Hsp>
|
|
|
2444 <Hsp_num>2</Hsp_num>
|
|
|
2445 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
2446 <Hsp_score>9</Hsp_score>
|
|
|
2447 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
2448 <Hsp_query-from>4</Hsp_query-from>
|
|
|
2449 <Hsp_query-to>12</Hsp_query-to>
|
|
|
2450 <Hsp_hit-from>2705</Hsp_hit-from>
|
|
|
2451 <Hsp_hit-to>2713</Hsp_hit-to>
|
|
|
2452 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2453 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2454 <Hsp_identity>9</Hsp_identity>
|
|
|
2455 <Hsp_positive>9</Hsp_positive>
|
|
|
2456 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2457 <Hsp_align-len>9</Hsp_align-len>
|
|
|
2458 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
2459 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
2460 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
2461 </Hsp>
|
|
|
2462 </Hit_hsps>
|
|
|
2463 </Hit>
|
|
|
2464 <Hit>
|
|
|
2465 <Hit_num>31</Hit_num>
|
|
|
2466 <Hit_id>gi|508123724|pdb|4HUB|0</Hit_id>
|
|
|
2467 <Hit_def>Chain 0, The Re-refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution: More Complete Structure Of The L7/l12 And L1 Stalk, L5 And Lx Proteins</Hit_def>
|
|
|
2468 <Hit_accession>4HUB_0</Hit_accession>
|
|
|
2469 <Hit_len>2910</Hit_len>
|
|
|
2470 <Hit_hsps>
|
|
|
2471 <Hsp>
|
|
|
2472 <Hsp_num>1</Hsp_num>
|
|
|
2473 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
2474 <Hsp_score>9</Hsp_score>
|
|
|
2475 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
2476 <Hsp_query-from>7</Hsp_query-from>
|
|
|
2477 <Hsp_query-to>15</Hsp_query-to>
|
|
|
2478 <Hsp_hit-from>298</Hsp_hit-from>
|
|
|
2479 <Hsp_hit-to>290</Hsp_hit-to>
|
|
|
2480 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2481 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
2482 <Hsp_identity>9</Hsp_identity>
|
|
|
2483 <Hsp_positive>9</Hsp_positive>
|
|
|
2484 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2485 <Hsp_align-len>9</Hsp_align-len>
|
|
|
2486 <Hsp_qseq>TCGTGAAGA</Hsp_qseq>
|
|
|
2487 <Hsp_hseq>TCGTGAAGA</Hsp_hseq>
|
|
|
2488 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
2489 </Hsp>
|
|
|
2490 <Hsp>
|
|
|
2491 <Hsp_num>2</Hsp_num>
|
|
|
2492 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
2493 <Hsp_score>9</Hsp_score>
|
|
|
2494 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
2495 <Hsp_query-from>4</Hsp_query-from>
|
|
|
2496 <Hsp_query-to>12</Hsp_query-to>
|
|
|
2497 <Hsp_hit-from>2618</Hsp_hit-from>
|
|
|
2498 <Hsp_hit-to>2626</Hsp_hit-to>
|
|
|
2499 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2500 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2501 <Hsp_identity>9</Hsp_identity>
|
|
|
2502 <Hsp_positive>9</Hsp_positive>
|
|
|
2503 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2504 <Hsp_align-len>9</Hsp_align-len>
|
|
|
2505 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
2506 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
2507 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
2508 </Hsp>
|
|
|
2509 <Hsp>
|
|
|
2510 <Hsp_num>3</Hsp_num>
|
|
|
2511 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
2512 <Hsp_score>7</Hsp_score>
|
|
|
2513 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
2514 <Hsp_query-from>6</Hsp_query-from>
|
|
|
2515 <Hsp_query-to>12</Hsp_query-to>
|
|
|
2516 <Hsp_hit-from>2599</Hsp_hit-from>
|
|
|
2517 <Hsp_hit-to>2605</Hsp_hit-to>
|
|
|
2518 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2519 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2520 <Hsp_identity>7</Hsp_identity>
|
|
|
2521 <Hsp_positive>7</Hsp_positive>
|
|
|
2522 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2523 <Hsp_align-len>7</Hsp_align-len>
|
|
|
2524 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
2525 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
2526 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
2527 </Hsp>
|
|
|
2528 </Hit_hsps>
|
|
|
2529 </Hit>
|
|
|
2530 <Hit>
|
|
|
2531 <Hit_num>32</Hit_num>
|
|
|
2532 <Hit_id>gi|485601478|pdb|3J3F|5</Hit_id>
|
|
|
2533 <Hit_def>Chain 5, Structure Of The H. Sapiens 60s Rrna</Hit_def>
|
|
|
2534 <Hit_accession>3J3F_5</Hit_accession>
|
|
|
2535 <Hit_len>5070</Hit_len>
|
|
|
2536 <Hit_hsps>
|
|
|
2537 <Hsp>
|
|
|
2538 <Hsp_num>1</Hsp_num>
|
|
|
2539 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
2540 <Hsp_score>9</Hsp_score>
|
|
|
2541 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
2542 <Hsp_query-from>4</Hsp_query-from>
|
|
|
2543 <Hsp_query-to>12</Hsp_query-to>
|
|
|
2544 <Hsp_hit-from>4536</Hsp_hit-from>
|
|
|
2545 <Hsp_hit-to>4544</Hsp_hit-to>
|
|
|
2546 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2547 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2548 <Hsp_identity>9</Hsp_identity>
|
|
|
2549 <Hsp_positive>9</Hsp_positive>
|
|
|
2550 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2551 <Hsp_align-len>9</Hsp_align-len>
|
|
|
2552 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
2553 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
2554 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
2555 </Hsp>
|
|
|
2556 <Hsp>
|
|
|
2557 <Hsp_num>2</Hsp_num>
|
|
|
2558 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
2559 <Hsp_score>8</Hsp_score>
|
|
|
2560 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
2561 <Hsp_query-from>1</Hsp_query-from>
|
|
|
2562 <Hsp_query-to>8</Hsp_query-to>
|
|
|
2563 <Hsp_hit-from>765</Hsp_hit-from>
|
|
|
2564 <Hsp_hit-to>772</Hsp_hit-to>
|
|
|
2565 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2566 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2567 <Hsp_identity>8</Hsp_identity>
|
|
|
2568 <Hsp_positive>8</Hsp_positive>
|
|
|
2569 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2570 <Hsp_align-len>8</Hsp_align-len>
|
|
|
2571 <Hsp_qseq>CGTCCGTC</Hsp_qseq>
|
|
|
2572 <Hsp_hseq>CGTCCGTC</Hsp_hseq>
|
|
|
2573 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
2574 </Hsp>
|
|
|
2575 <Hsp>
|
|
|
2576 <Hsp_num>3</Hsp_num>
|
|
|
2577 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
2578 <Hsp_score>8</Hsp_score>
|
|
|
2579 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
2580 <Hsp_query-from>1</Hsp_query-from>
|
|
|
2581 <Hsp_query-to>8</Hsp_query-to>
|
|
|
2582 <Hsp_hit-from>769</Hsp_hit-from>
|
|
|
2583 <Hsp_hit-to>776</Hsp_hit-to>
|
|
|
2584 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2585 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2586 <Hsp_identity>8</Hsp_identity>
|
|
|
2587 <Hsp_positive>8</Hsp_positive>
|
|
|
2588 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2589 <Hsp_align-len>8</Hsp_align-len>
|
|
|
2590 <Hsp_qseq>CGTCCGTC</Hsp_qseq>
|
|
|
2591 <Hsp_hseq>CGTCCGTC</Hsp_hseq>
|
|
|
2592 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
2593 </Hsp>
|
|
|
2594 <Hsp>
|
|
|
2595 <Hsp_num>4</Hsp_num>
|
|
|
2596 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
2597 <Hsp_score>8</Hsp_score>
|
|
|
2598 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
2599 <Hsp_query-from>1</Hsp_query-from>
|
|
|
2600 <Hsp_query-to>8</Hsp_query-to>
|
|
|
2601 <Hsp_hit-from>773</Hsp_hit-from>
|
|
|
2602 <Hsp_hit-to>780</Hsp_hit-to>
|
|
|
2603 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2604 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2605 <Hsp_identity>8</Hsp_identity>
|
|
|
2606 <Hsp_positive>8</Hsp_positive>
|
|
|
2607 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2608 <Hsp_align-len>8</Hsp_align-len>
|
|
|
2609 <Hsp_qseq>CGTCCGTC</Hsp_qseq>
|
|
|
2610 <Hsp_hseq>CGTCCGTC</Hsp_hseq>
|
|
|
2611 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
2612 </Hsp>
|
|
|
2613 <Hsp>
|
|
|
2614 <Hsp_num>5</Hsp_num>
|
|
|
2615 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
2616 <Hsp_score>8</Hsp_score>
|
|
|
2617 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
2618 <Hsp_query-from>1</Hsp_query-from>
|
|
|
2619 <Hsp_query-to>8</Hsp_query-to>
|
|
|
2620 <Hsp_hit-from>777</Hsp_hit-from>
|
|
|
2621 <Hsp_hit-to>784</Hsp_hit-to>
|
|
|
2622 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2623 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2624 <Hsp_identity>8</Hsp_identity>
|
|
|
2625 <Hsp_positive>8</Hsp_positive>
|
|
|
2626 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2627 <Hsp_align-len>8</Hsp_align-len>
|
|
|
2628 <Hsp_qseq>CGTCCGTC</Hsp_qseq>
|
|
|
2629 <Hsp_hseq>CGTCCGTC</Hsp_hseq>
|
|
|
2630 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
2631 </Hsp>
|
|
|
2632 <Hsp>
|
|
|
2633 <Hsp_num>6</Hsp_num>
|
|
|
2634 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
2635 <Hsp_score>8</Hsp_score>
|
|
|
2636 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
2637 <Hsp_query-from>9</Hsp_query-from>
|
|
|
2638 <Hsp_query-to>16</Hsp_query-to>
|
|
|
2639 <Hsp_hit-from>3939</Hsp_hit-from>
|
|
|
2640 <Hsp_hit-to>3946</Hsp_hit-to>
|
|
|
2641 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2642 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2643 <Hsp_identity>8</Hsp_identity>
|
|
|
2644 <Hsp_positive>8</Hsp_positive>
|
|
|
2645 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2646 <Hsp_align-len>8</Hsp_align-len>
|
|
|
2647 <Hsp_qseq>GTGAAGAG</Hsp_qseq>
|
|
|
2648 <Hsp_hseq>GTGAAGAG</Hsp_hseq>
|
|
|
2649 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
2650 </Hsp>
|
|
|
2651 <Hsp>
|
|
|
2652 <Hsp_num>7</Hsp_num>
|
|
|
2653 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
2654 <Hsp_score>7</Hsp_score>
|
|
|
2655 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
2656 <Hsp_query-from>10</Hsp_query-from>
|
|
|
2657 <Hsp_query-to>16</Hsp_query-to>
|
|
|
2658 <Hsp_hit-from>393</Hsp_hit-from>
|
|
|
2659 <Hsp_hit-to>399</Hsp_hit-to>
|
|
|
2660 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2661 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2662 <Hsp_identity>7</Hsp_identity>
|
|
|
2663 <Hsp_positive>7</Hsp_positive>
|
|
|
2664 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2665 <Hsp_align-len>7</Hsp_align-len>
|
|
|
2666 <Hsp_qseq>TGAAGAG</Hsp_qseq>
|
|
|
2667 <Hsp_hseq>TGAAGAG</Hsp_hseq>
|
|
|
2668 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
2669 </Hsp>
|
|
|
2670 <Hsp>
|
|
|
2671 <Hsp_num>8</Hsp_num>
|
|
|
2672 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
2673 <Hsp_score>7</Hsp_score>
|
|
|
2674 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
2675 <Hsp_query-from>9</Hsp_query-from>
|
|
|
2676 <Hsp_query-to>15</Hsp_query-to>
|
|
|
2677 <Hsp_hit-from>3720</Hsp_hit-from>
|
|
|
2678 <Hsp_hit-to>3726</Hsp_hit-to>
|
|
|
2679 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2680 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2681 <Hsp_identity>7</Hsp_identity>
|
|
|
2682 <Hsp_positive>7</Hsp_positive>
|
|
|
2683 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2684 <Hsp_align-len>7</Hsp_align-len>
|
|
|
2685 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
2686 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
2687 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
2688 </Hsp>
|
|
|
2689 </Hit_hsps>
|
|
|
2690 </Hit>
|
|
|
2691 <Hit>
|
|
|
2692 <Hit_num>33</Hit_num>
|
|
|
2693 <Hit_id>gi|485601474|pdb|3J3E|5</Hit_id>
|
|
|
2694 <Hit_def>Chain 5, Structure Of The D. Melanogaster 60s Rrna</Hit_def>
|
|
|
2695 <Hit_accession>3J3E_5</Hit_accession>
|
|
|
2696 <Hit_len>3970</Hit_len>
|
|
|
2697 <Hit_hsps>
|
|
|
2698 <Hsp>
|
|
|
2699 <Hsp_num>1</Hsp_num>
|
|
|
2700 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
2701 <Hsp_score>9</Hsp_score>
|
|
|
2702 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
2703 <Hsp_query-from>4</Hsp_query-from>
|
|
|
2704 <Hsp_query-to>12</Hsp_query-to>
|
|
|
2705 <Hsp_hit-from>3490</Hsp_hit-from>
|
|
|
2706 <Hsp_hit-to>3498</Hsp_hit-to>
|
|
|
2707 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2708 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2709 <Hsp_identity>9</Hsp_identity>
|
|
|
2710 <Hsp_positive>9</Hsp_positive>
|
|
|
2711 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2712 <Hsp_align-len>9</Hsp_align-len>
|
|
|
2713 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
2714 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
2715 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
2716 </Hsp>
|
|
|
2717 <Hsp>
|
|
|
2718 <Hsp_num>2</Hsp_num>
|
|
|
2719 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
2720 <Hsp_score>8</Hsp_score>
|
|
|
2721 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
2722 <Hsp_query-from>9</Hsp_query-from>
|
|
|
2723 <Hsp_query-to>16</Hsp_query-to>
|
|
|
2724 <Hsp_hit-from>2177</Hsp_hit-from>
|
|
|
2725 <Hsp_hit-to>2184</Hsp_hit-to>
|
|
|
2726 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2727 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2728 <Hsp_identity>8</Hsp_identity>
|
|
|
2729 <Hsp_positive>8</Hsp_positive>
|
|
|
2730 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2731 <Hsp_align-len>8</Hsp_align-len>
|
|
|
2732 <Hsp_qseq>GTGAAGAG</Hsp_qseq>
|
|
|
2733 <Hsp_hseq>GTGAAGAG</Hsp_hseq>
|
|
|
2734 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
2735 </Hsp>
|
|
|
2736 <Hsp>
|
|
|
2737 <Hsp_num>3</Hsp_num>
|
|
|
2738 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
2739 <Hsp_score>7</Hsp_score>
|
|
|
2740 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
2741 <Hsp_query-from>9</Hsp_query-from>
|
|
|
2742 <Hsp_query-to>15</Hsp_query-to>
|
|
|
2743 <Hsp_hit-from>2594</Hsp_hit-from>
|
|
|
2744 <Hsp_hit-to>2600</Hsp_hit-to>
|
|
|
2745 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2746 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2747 <Hsp_identity>7</Hsp_identity>
|
|
|
2748 <Hsp_positive>7</Hsp_positive>
|
|
|
2749 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2750 <Hsp_align-len>7</Hsp_align-len>
|
|
|
2751 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
2752 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
2753 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
2754 </Hsp>
|
|
|
2755 <Hsp>
|
|
|
2756 <Hsp_num>4</Hsp_num>
|
|
|
2757 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
2758 <Hsp_score>7</Hsp_score>
|
|
|
2759 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
2760 <Hsp_query-from>1</Hsp_query-from>
|
|
|
2761 <Hsp_query-to>7</Hsp_query-to>
|
|
|
2762 <Hsp_hit-from>3627</Hsp_hit-from>
|
|
|
2763 <Hsp_hit-to>3633</Hsp_hit-to>
|
|
|
2764 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2765 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2766 <Hsp_identity>7</Hsp_identity>
|
|
|
2767 <Hsp_positive>7</Hsp_positive>
|
|
|
2768 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2769 <Hsp_align-len>7</Hsp_align-len>
|
|
|
2770 <Hsp_qseq>CGTCCGT</Hsp_qseq>
|
|
|
2771 <Hsp_hseq>CGTCCGT</Hsp_hseq>
|
|
|
2772 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
2773 </Hsp>
|
|
|
2774 </Hit_hsps>
|
|
|
2775 </Hit>
|
|
|
2776 <Hit>
|
|
|
2777 <Hit_num>34</Hit_num>
|
|
|
2778 <Hit_id>gi|449802187|pdb|3ZEX|B</Hit_id>
|
|
|
2779 <Hit_def>Chain B, High_resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome</Hit_def>
|
|
|
2780 <Hit_accession>3ZEX_B</Hit_accession>
|
|
|
2781 <Hit_len>1465</Hit_len>
|
|
|
2782 <Hit_hsps>
|
|
|
2783 <Hsp>
|
|
|
2784 <Hsp_num>1</Hsp_num>
|
|
|
2785 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
2786 <Hsp_score>9</Hsp_score>
|
|
|
2787 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
2788 <Hsp_query-from>4</Hsp_query-from>
|
|
|
2789 <Hsp_query-to>12</Hsp_query-to>
|
|
|
2790 <Hsp_hit-from>1334</Hsp_hit-from>
|
|
|
2791 <Hsp_hit-to>1342</Hsp_hit-to>
|
|
|
2792 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2793 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2794 <Hsp_identity>9</Hsp_identity>
|
|
|
2795 <Hsp_positive>9</Hsp_positive>
|
|
|
2796 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2797 <Hsp_align-len>9</Hsp_align-len>
|
|
|
2798 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
2799 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
2800 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
2801 </Hsp>
|
|
|
2802 <Hsp>
|
|
|
2803 <Hsp_num>2</Hsp_num>
|
|
|
2804 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
2805 <Hsp_score>7</Hsp_score>
|
|
|
2806 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
2807 <Hsp_query-from>10</Hsp_query-from>
|
|
|
2808 <Hsp_query-to>16</Hsp_query-to>
|
|
|
2809 <Hsp_hit-from>705</Hsp_hit-from>
|
|
|
2810 <Hsp_hit-to>711</Hsp_hit-to>
|
|
|
2811 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2812 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2813 <Hsp_identity>7</Hsp_identity>
|
|
|
2814 <Hsp_positive>7</Hsp_positive>
|
|
|
2815 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2816 <Hsp_align-len>7</Hsp_align-len>
|
|
|
2817 <Hsp_qseq>TGAAGAG</Hsp_qseq>
|
|
|
2818 <Hsp_hseq>TGAAGAG</Hsp_hseq>
|
|
|
2819 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
2820 </Hsp>
|
|
|
2821 </Hit_hsps>
|
|
|
2822 </Hit>
|
|
|
2823 <Hit>
|
|
|
2824 <Hit_num>35</Hit_num>
|
|
|
2825 <Hit_id>gi|428697991|pdb|3J2L|1</Hit_id>
|
|
|
2826 <Hit_def>Chain 1, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Rna)</Hit_def>
|
|
|
2827 <Hit_accession>3J2L_1</Hit_accession>
|
|
|
2828 <Hit_len>3049</Hit_len>
|
|
|
2829 <Hit_hsps>
|
|
|
2830 <Hsp>
|
|
|
2831 <Hsp_num>1</Hsp_num>
|
|
|
2832 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
2833 <Hsp_score>9</Hsp_score>
|
|
|
2834 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
2835 <Hsp_query-from>1</Hsp_query-from>
|
|
|
2836 <Hsp_query-to>13</Hsp_query-to>
|
|
|
2837 <Hsp_hit-from>651</Hsp_hit-from>
|
|
|
2838 <Hsp_hit-to>663</Hsp_hit-to>
|
|
|
2839 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2840 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2841 <Hsp_identity>12</Hsp_identity>
|
|
|
2842 <Hsp_positive>12</Hsp_positive>
|
|
|
2843 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2844 <Hsp_align-len>13</Hsp_align-len>
|
|
|
2845 <Hsp_qseq>CGTCCGTCGTGAA</Hsp_qseq>
|
|
|
2846 <Hsp_hseq>CGTCCGTCTTGAA</Hsp_hseq>
|
|
|
2847 <Hsp_midline>|||||||| ||||</Hsp_midline>
|
|
|
2848 </Hsp>
|
|
|
2849 <Hsp>
|
|
|
2850 <Hsp_num>2</Hsp_num>
|
|
|
2851 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
2852 <Hsp_score>9</Hsp_score>
|
|
|
2853 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
2854 <Hsp_query-from>4</Hsp_query-from>
|
|
|
2855 <Hsp_query-to>12</Hsp_query-to>
|
|
|
2856 <Hsp_hit-from>2705</Hsp_hit-from>
|
|
|
2857 <Hsp_hit-to>2713</Hsp_hit-to>
|
|
|
2858 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2859 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2860 <Hsp_identity>9</Hsp_identity>
|
|
|
2861 <Hsp_positive>9</Hsp_positive>
|
|
|
2862 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2863 <Hsp_align-len>9</Hsp_align-len>
|
|
|
2864 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
2865 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
2866 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
2867 </Hsp>
|
|
|
2868 </Hit_hsps>
|
|
|
2869 </Hit>
|
|
|
2870 <Hit>
|
|
|
2871 <Hit_num>36</Hit_num>
|
|
|
2872 <Hit_id>gi|392311504|pdb|3OW2|0</Hit_id>
|
|
|
2873 <Hit_def>Chain 0, Crystal Structure Of Enhanced Macrolide Bound To 50s Ribosomal Subunit</Hit_def>
|
|
|
2874 <Hit_accession>3OW2_0</Hit_accession>
|
|
|
2875 <Hit_len>2902</Hit_len>
|
|
|
2876 <Hit_hsps>
|
|
|
2877 <Hsp>
|
|
|
2878 <Hsp_num>1</Hsp_num>
|
|
|
2879 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
2880 <Hsp_score>9</Hsp_score>
|
|
|
2881 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
2882 <Hsp_query-from>4</Hsp_query-from>
|
|
|
2883 <Hsp_query-to>12</Hsp_query-to>
|
|
|
2884 <Hsp_hit-from>2613</Hsp_hit-from>
|
|
|
2885 <Hsp_hit-to>2621</Hsp_hit-to>
|
|
|
2886 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2887 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2888 <Hsp_identity>9</Hsp_identity>
|
|
|
2889 <Hsp_positive>9</Hsp_positive>
|
|
|
2890 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2891 <Hsp_align-len>9</Hsp_align-len>
|
|
|
2892 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
2893 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
2894 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
2895 </Hsp>
|
|
|
2896 <Hsp>
|
|
|
2897 <Hsp_num>2</Hsp_num>
|
|
|
2898 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
2899 <Hsp_score>7</Hsp_score>
|
|
|
2900 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
2901 <Hsp_query-from>6</Hsp_query-from>
|
|
|
2902 <Hsp_query-to>12</Hsp_query-to>
|
|
|
2903 <Hsp_hit-from>2594</Hsp_hit-from>
|
|
|
2904 <Hsp_hit-to>2600</Hsp_hit-to>
|
|
|
2905 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2906 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2907 <Hsp_identity>7</Hsp_identity>
|
|
|
2908 <Hsp_positive>7</Hsp_positive>
|
|
|
2909 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2910 <Hsp_align-len>7</Hsp_align-len>
|
|
|
2911 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
2912 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
2913 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
2914 </Hsp>
|
|
|
2915 </Hit_hsps>
|
|
|
2916 </Hit>
|
|
|
2917 <Hit>
|
|
|
2918 <Hit_num>37</Hit_num>
|
|
|
2919 <Hit_id>gi|374977932|pdb|4ADX|0</Hit_id>
|
|
|
2920 <Hit_def>Chain 0, The Cryo-em Structure Of The Archaeal 50s Ribosomal Subunit In Complex With Initiation Factor 6</Hit_def>
|
|
|
2921 <Hit_accession>4ADX_0</Hit_accession>
|
|
|
2922 <Hit_len>2923</Hit_len>
|
|
|
2923 <Hit_hsps>
|
|
|
2924 <Hsp>
|
|
|
2925 <Hsp_num>1</Hsp_num>
|
|
|
2926 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
2927 <Hsp_score>9</Hsp_score>
|
|
|
2928 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
2929 <Hsp_query-from>7</Hsp_query-from>
|
|
|
2930 <Hsp_query-to>15</Hsp_query-to>
|
|
|
2931 <Hsp_hit-from>305</Hsp_hit-from>
|
|
|
2932 <Hsp_hit-to>297</Hsp_hit-to>
|
|
|
2933 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2934 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
2935 <Hsp_identity>9</Hsp_identity>
|
|
|
2936 <Hsp_positive>9</Hsp_positive>
|
|
|
2937 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2938 <Hsp_align-len>9</Hsp_align-len>
|
|
|
2939 <Hsp_qseq>TCGTGAAGA</Hsp_qseq>
|
|
|
2940 <Hsp_hseq>TCGTGAAGA</Hsp_hseq>
|
|
|
2941 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
2942 </Hsp>
|
|
|
2943 <Hsp>
|
|
|
2944 <Hsp_num>2</Hsp_num>
|
|
|
2945 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
2946 <Hsp_score>9</Hsp_score>
|
|
|
2947 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
2948 <Hsp_query-from>4</Hsp_query-from>
|
|
|
2949 <Hsp_query-to>12</Hsp_query-to>
|
|
|
2950 <Hsp_hit-from>2625</Hsp_hit-from>
|
|
|
2951 <Hsp_hit-to>2633</Hsp_hit-to>
|
|
|
2952 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2953 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2954 <Hsp_identity>9</Hsp_identity>
|
|
|
2955 <Hsp_positive>9</Hsp_positive>
|
|
|
2956 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2957 <Hsp_align-len>9</Hsp_align-len>
|
|
|
2958 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
2959 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
2960 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
2961 </Hsp>
|
|
|
2962 <Hsp>
|
|
|
2963 <Hsp_num>3</Hsp_num>
|
|
|
2964 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
2965 <Hsp_score>7</Hsp_score>
|
|
|
2966 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
2967 <Hsp_query-from>6</Hsp_query-from>
|
|
|
2968 <Hsp_query-to>12</Hsp_query-to>
|
|
|
2969 <Hsp_hit-from>2606</Hsp_hit-from>
|
|
|
2970 <Hsp_hit-to>2612</Hsp_hit-to>
|
|
|
2971 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
2972 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
2973 <Hsp_identity>7</Hsp_identity>
|
|
|
2974 <Hsp_positive>7</Hsp_positive>
|
|
|
2975 <Hsp_gaps>0</Hsp_gaps>
|
|
|
2976 <Hsp_align-len>7</Hsp_align-len>
|
|
|
2977 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
2978 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
2979 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
2980 </Hsp>
|
|
|
2981 </Hit_hsps>
|
|
|
2982 </Hit>
|
|
|
2983 <Hit>
|
|
|
2984 <Hit_num>38</Hit_num>
|
|
|
2985 <Hit_id>gi|364506133|pdb|3U5F|6</Hit_id>
|
|
|
2986 <Hit_def>Chain 6, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Ribosomal Rna And Ions Of The 40s Subunit, Ribosome B</Hit_def>
|
|
|
2987 <Hit_accession>3U5F_6</Hit_accession>
|
|
|
2988 <Hit_len>1800</Hit_len>
|
|
|
2989 <Hit_hsps>
|
|
|
2990 <Hsp>
|
|
|
2991 <Hsp_num>1</Hsp_num>
|
|
|
2992 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
2993 <Hsp_score>9</Hsp_score>
|
|
|
2994 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
2995 <Hsp_query-from>3</Hsp_query-from>
|
|
|
2996 <Hsp_query-to>11</Hsp_query-to>
|
|
|
2997 <Hsp_hit-from>1528</Hsp_hit-from>
|
|
|
2998 <Hsp_hit-to>1536</Hsp_hit-to>
|
|
|
2999 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3000 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3001 <Hsp_identity>9</Hsp_identity>
|
|
|
3002 <Hsp_positive>9</Hsp_positive>
|
|
|
3003 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3004 <Hsp_align-len>9</Hsp_align-len>
|
|
|
3005 <Hsp_qseq>TCCGTCGTG</Hsp_qseq>
|
|
|
3006 <Hsp_hseq>TCCGTCGTG</Hsp_hseq>
|
|
|
3007 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
3008 </Hsp>
|
|
|
3009 <Hsp>
|
|
|
3010 <Hsp_num>2</Hsp_num>
|
|
|
3011 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
3012 <Hsp_score>7</Hsp_score>
|
|
|
3013 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
3014 <Hsp_query-from>4</Hsp_query-from>
|
|
|
3015 <Hsp_query-to>10</Hsp_query-to>
|
|
|
3016 <Hsp_hit-from>1006</Hsp_hit-from>
|
|
|
3017 <Hsp_hit-to>1012</Hsp_hit-to>
|
|
|
3018 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3019 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3020 <Hsp_identity>7</Hsp_identity>
|
|
|
3021 <Hsp_positive>7</Hsp_positive>
|
|
|
3022 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3023 <Hsp_align-len>7</Hsp_align-len>
|
|
|
3024 <Hsp_qseq>CCGTCGT</Hsp_qseq>
|
|
|
3025 <Hsp_hseq>CCGTCGT</Hsp_hseq>
|
|
|
3026 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
3027 </Hsp>
|
|
|
3028 <Hsp>
|
|
|
3029 <Hsp_num>3</Hsp_num>
|
|
|
3030 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
3031 <Hsp_score>7</Hsp_score>
|
|
|
3032 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
3033 <Hsp_query-from>10</Hsp_query-from>
|
|
|
3034 <Hsp_query-to>16</Hsp_query-to>
|
|
|
3035 <Hsp_hit-from>1569</Hsp_hit-from>
|
|
|
3036 <Hsp_hit-to>1563</Hsp_hit-to>
|
|
|
3037 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3038 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
3039 <Hsp_identity>7</Hsp_identity>
|
|
|
3040 <Hsp_positive>7</Hsp_positive>
|
|
|
3041 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3042 <Hsp_align-len>7</Hsp_align-len>
|
|
|
3043 <Hsp_qseq>TGAAGAG</Hsp_qseq>
|
|
|
3044 <Hsp_hseq>TGAAGAG</Hsp_hseq>
|
|
|
3045 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
3046 </Hsp>
|
|
|
3047 </Hit_hsps>
|
|
|
3048 </Hit>
|
|
|
3049 <Hit>
|
|
|
3050 <Hit_num>39</Hit_num>
|
|
|
3051 <Hit_id>gi|364506095|pdb|3U5B|2</Hit_id>
|
|
|
3052 <Hit_def>Chain 2, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Ribosomal Rna And Ions Of The 40s Subunit, Ribosome A >gi|558704782|pdb|4BYO|2 Chain 2, Cryo-em Reconstruction Of The 80s-eif5b-met-itrnamet Eukaryotic Translation Initiation Complex >gi|558704824|pdb|4BYV|2 Chain 2, Cryo-em Reconstruction Of The 80s-eif5b-met-itrnamet Eukaryotic Translation Initiation Complex</Hit_def>
|
|
|
3053 <Hit_accession>3U5B_2</Hit_accession>
|
|
|
3054 <Hit_len>1800</Hit_len>
|
|
|
3055 <Hit_hsps>
|
|
|
3056 <Hsp>
|
|
|
3057 <Hsp_num>1</Hsp_num>
|
|
|
3058 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
3059 <Hsp_score>9</Hsp_score>
|
|
|
3060 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
3061 <Hsp_query-from>3</Hsp_query-from>
|
|
|
3062 <Hsp_query-to>11</Hsp_query-to>
|
|
|
3063 <Hsp_hit-from>1528</Hsp_hit-from>
|
|
|
3064 <Hsp_hit-to>1536</Hsp_hit-to>
|
|
|
3065 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3066 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3067 <Hsp_identity>9</Hsp_identity>
|
|
|
3068 <Hsp_positive>9</Hsp_positive>
|
|
|
3069 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3070 <Hsp_align-len>9</Hsp_align-len>
|
|
|
3071 <Hsp_qseq>TCCGTCGTG</Hsp_qseq>
|
|
|
3072 <Hsp_hseq>TCCGTCGTG</Hsp_hseq>
|
|
|
3073 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
3074 </Hsp>
|
|
|
3075 <Hsp>
|
|
|
3076 <Hsp_num>2</Hsp_num>
|
|
|
3077 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
3078 <Hsp_score>7</Hsp_score>
|
|
|
3079 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
3080 <Hsp_query-from>4</Hsp_query-from>
|
|
|
3081 <Hsp_query-to>10</Hsp_query-to>
|
|
|
3082 <Hsp_hit-from>1006</Hsp_hit-from>
|
|
|
3083 <Hsp_hit-to>1012</Hsp_hit-to>
|
|
|
3084 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3085 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3086 <Hsp_identity>7</Hsp_identity>
|
|
|
3087 <Hsp_positive>7</Hsp_positive>
|
|
|
3088 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3089 <Hsp_align-len>7</Hsp_align-len>
|
|
|
3090 <Hsp_qseq>CCGTCGT</Hsp_qseq>
|
|
|
3091 <Hsp_hseq>CCGTCGT</Hsp_hseq>
|
|
|
3092 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
3093 </Hsp>
|
|
|
3094 <Hsp>
|
|
|
3095 <Hsp_num>3</Hsp_num>
|
|
|
3096 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
3097 <Hsp_score>7</Hsp_score>
|
|
|
3098 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
3099 <Hsp_query-from>10</Hsp_query-from>
|
|
|
3100 <Hsp_query-to>16</Hsp_query-to>
|
|
|
3101 <Hsp_hit-from>1569</Hsp_hit-from>
|
|
|
3102 <Hsp_hit-to>1563</Hsp_hit-to>
|
|
|
3103 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3104 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
3105 <Hsp_identity>7</Hsp_identity>
|
|
|
3106 <Hsp_positive>7</Hsp_positive>
|
|
|
3107 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3108 <Hsp_align-len>7</Hsp_align-len>
|
|
|
3109 <Hsp_qseq>TGAAGAG</Hsp_qseq>
|
|
|
3110 <Hsp_hseq>TGAAGAG</Hsp_hseq>
|
|
|
3111 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
3112 </Hsp>
|
|
|
3113 </Hit_hsps>
|
|
|
3114 </Hit>
|
|
|
3115 <Hit>
|
|
|
3116 <Hit_num>40</Hit_num>
|
|
|
3117 <Hit_id>gi|358440203|pdb|4A1D|1</Hit_id>
|
|
|
3118 <Hit_def>Chain 1, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 4.</Hit_def>
|
|
|
3119 <Hit_accession>4A1D_1</Hit_accession>
|
|
|
3120 <Hit_len>3119</Hit_len>
|
|
|
3121 <Hit_hsps>
|
|
|
3122 <Hsp>
|
|
|
3123 <Hsp_num>1</Hsp_num>
|
|
|
3124 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
3125 <Hsp_score>9</Hsp_score>
|
|
|
3126 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
3127 <Hsp_query-from>7</Hsp_query-from>
|
|
|
3128 <Hsp_query-to>15</Hsp_query-to>
|
|
|
3129 <Hsp_hit-from>2280</Hsp_hit-from>
|
|
|
3130 <Hsp_hit-to>2288</Hsp_hit-to>
|
|
|
3131 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3132 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3133 <Hsp_identity>9</Hsp_identity>
|
|
|
3134 <Hsp_positive>9</Hsp_positive>
|
|
|
3135 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3136 <Hsp_align-len>9</Hsp_align-len>
|
|
|
3137 <Hsp_qseq>TCGTGAAGA</Hsp_qseq>
|
|
|
3138 <Hsp_hseq>TCGTGAAGA</Hsp_hseq>
|
|
|
3139 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
3140 </Hsp>
|
|
|
3141 <Hsp>
|
|
|
3142 <Hsp_num>2</Hsp_num>
|
|
|
3143 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
3144 <Hsp_score>9</Hsp_score>
|
|
|
3145 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
3146 <Hsp_query-from>4</Hsp_query-from>
|
|
|
3147 <Hsp_query-to>12</Hsp_query-to>
|
|
|
3148 <Hsp_hit-from>2714</Hsp_hit-from>
|
|
|
3149 <Hsp_hit-to>2722</Hsp_hit-to>
|
|
|
3150 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3151 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3152 <Hsp_identity>9</Hsp_identity>
|
|
|
3153 <Hsp_positive>9</Hsp_positive>
|
|
|
3154 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3155 <Hsp_align-len>9</Hsp_align-len>
|
|
|
3156 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
3157 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
3158 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
3159 </Hsp>
|
|
|
3160 <Hsp>
|
|
|
3161 <Hsp_num>3</Hsp_num>
|
|
|
3162 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
3163 <Hsp_score>7</Hsp_score>
|
|
|
3164 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
3165 <Hsp_query-from>8</Hsp_query-from>
|
|
|
3166 <Hsp_query-to>14</Hsp_query-to>
|
|
|
3167 <Hsp_hit-from>2838</Hsp_hit-from>
|
|
|
3168 <Hsp_hit-to>2844</Hsp_hit-to>
|
|
|
3169 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3170 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3171 <Hsp_identity>7</Hsp_identity>
|
|
|
3172 <Hsp_positive>7</Hsp_positive>
|
|
|
3173 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3174 <Hsp_align-len>7</Hsp_align-len>
|
|
|
3175 <Hsp_qseq>CGTGAAG</Hsp_qseq>
|
|
|
3176 <Hsp_hseq>CGTGAAG</Hsp_hseq>
|
|
|
3177 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
3178 </Hsp>
|
|
|
3179 </Hit_hsps>
|
|
|
3180 </Hit>
|
|
|
3181 <Hit>
|
|
|
3182 <Hit_num>41</Hit_num>
|
|
|
3183 <Hit_id>gi|358440111|pdb|4A18|1</Hit_id>
|
|
|
3184 <Hit_def>Chain 1, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1</Hit_def>
|
|
|
3185 <Hit_accession>4A18_1</Hit_accession>
|
|
|
3186 <Hit_len>3354</Hit_len>
|
|
|
3187 <Hit_hsps>
|
|
|
3188 <Hsp>
|
|
|
3189 <Hsp_num>1</Hsp_num>
|
|
|
3190 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
3191 <Hsp_score>9</Hsp_score>
|
|
|
3192 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
3193 <Hsp_query-from>7</Hsp_query-from>
|
|
|
3194 <Hsp_query-to>15</Hsp_query-to>
|
|
|
3195 <Hsp_hit-from>2513</Hsp_hit-from>
|
|
|
3196 <Hsp_hit-to>2521</Hsp_hit-to>
|
|
|
3197 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3198 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3199 <Hsp_identity>9</Hsp_identity>
|
|
|
3200 <Hsp_positive>9</Hsp_positive>
|
|
|
3201 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3202 <Hsp_align-len>9</Hsp_align-len>
|
|
|
3203 <Hsp_qseq>TCGTGAAGA</Hsp_qseq>
|
|
|
3204 <Hsp_hseq>TCGTGAAGA</Hsp_hseq>
|
|
|
3205 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
3206 </Hsp>
|
|
|
3207 <Hsp>
|
|
|
3208 <Hsp_num>2</Hsp_num>
|
|
|
3209 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
3210 <Hsp_score>9</Hsp_score>
|
|
|
3211 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
3212 <Hsp_query-from>4</Hsp_query-from>
|
|
|
3213 <Hsp_query-to>12</Hsp_query-to>
|
|
|
3214 <Hsp_hit-from>2947</Hsp_hit-from>
|
|
|
3215 <Hsp_hit-to>2955</Hsp_hit-to>
|
|
|
3216 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3217 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3218 <Hsp_identity>9</Hsp_identity>
|
|
|
3219 <Hsp_positive>9</Hsp_positive>
|
|
|
3220 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3221 <Hsp_align-len>9</Hsp_align-len>
|
|
|
3222 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
3223 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
3224 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
3225 </Hsp>
|
|
|
3226 <Hsp>
|
|
|
3227 <Hsp_num>3</Hsp_num>
|
|
|
3228 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
3229 <Hsp_score>7</Hsp_score>
|
|
|
3230 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
3231 <Hsp_query-from>8</Hsp_query-from>
|
|
|
3232 <Hsp_query-to>14</Hsp_query-to>
|
|
|
3233 <Hsp_hit-from>3071</Hsp_hit-from>
|
|
|
3234 <Hsp_hit-to>3077</Hsp_hit-to>
|
|
|
3235 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3236 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3237 <Hsp_identity>7</Hsp_identity>
|
|
|
3238 <Hsp_positive>7</Hsp_positive>
|
|
|
3239 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3240 <Hsp_align-len>7</Hsp_align-len>
|
|
|
3241 <Hsp_qseq>CGTGAAG</Hsp_qseq>
|
|
|
3242 <Hsp_hseq>CGTGAAG</Hsp_hseq>
|
|
|
3243 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
3244 </Hsp>
|
|
|
3245 </Hit_hsps>
|
|
|
3246 </Hit>
|
|
|
3247 <Hit>
|
|
|
3248 <Hit_num>42</Hit_num>
|
|
|
3249 <Hit_id>gi|358440157|pdb|4A1B|1</Hit_id>
|
|
|
3250 <Hit_def>Chain 1, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 3. >gi|359807703|pdb|4A19|1 Chain 1, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 2.</Hit_def>
|
|
|
3251 <Hit_accession>4A1B_1</Hit_accession>
|
|
|
3252 <Hit_len>3354</Hit_len>
|
|
|
3253 <Hit_hsps>
|
|
|
3254 <Hsp>
|
|
|
3255 <Hsp_num>1</Hsp_num>
|
|
|
3256 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
3257 <Hsp_score>9</Hsp_score>
|
|
|
3258 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
3259 <Hsp_query-from>7</Hsp_query-from>
|
|
|
3260 <Hsp_query-to>15</Hsp_query-to>
|
|
|
3261 <Hsp_hit-from>2513</Hsp_hit-from>
|
|
|
3262 <Hsp_hit-to>2521</Hsp_hit-to>
|
|
|
3263 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3264 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3265 <Hsp_identity>9</Hsp_identity>
|
|
|
3266 <Hsp_positive>9</Hsp_positive>
|
|
|
3267 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3268 <Hsp_align-len>9</Hsp_align-len>
|
|
|
3269 <Hsp_qseq>TCGTGAAGA</Hsp_qseq>
|
|
|
3270 <Hsp_hseq>TCGTGAAGA</Hsp_hseq>
|
|
|
3271 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
3272 </Hsp>
|
|
|
3273 <Hsp>
|
|
|
3274 <Hsp_num>2</Hsp_num>
|
|
|
3275 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
3276 <Hsp_score>9</Hsp_score>
|
|
|
3277 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
3278 <Hsp_query-from>4</Hsp_query-from>
|
|
|
3279 <Hsp_query-to>12</Hsp_query-to>
|
|
|
3280 <Hsp_hit-from>2947</Hsp_hit-from>
|
|
|
3281 <Hsp_hit-to>2955</Hsp_hit-to>
|
|
|
3282 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3283 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3284 <Hsp_identity>9</Hsp_identity>
|
|
|
3285 <Hsp_positive>9</Hsp_positive>
|
|
|
3286 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3287 <Hsp_align-len>9</Hsp_align-len>
|
|
|
3288 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
3289 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
3290 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
3291 </Hsp>
|
|
|
3292 <Hsp>
|
|
|
3293 <Hsp_num>3</Hsp_num>
|
|
|
3294 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
3295 <Hsp_score>7</Hsp_score>
|
|
|
3296 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
3297 <Hsp_query-from>8</Hsp_query-from>
|
|
|
3298 <Hsp_query-to>14</Hsp_query-to>
|
|
|
3299 <Hsp_hit-from>3071</Hsp_hit-from>
|
|
|
3300 <Hsp_hit-to>3077</Hsp_hit-to>
|
|
|
3301 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3302 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3303 <Hsp_identity>7</Hsp_identity>
|
|
|
3304 <Hsp_positive>7</Hsp_positive>
|
|
|
3305 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3306 <Hsp_align-len>7</Hsp_align-len>
|
|
|
3307 <Hsp_qseq>CGTGAAG</Hsp_qseq>
|
|
|
3308 <Hsp_hseq>CGTGAAG</Hsp_hseq>
|
|
|
3309 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
3310 </Hsp>
|
|
|
3311 </Hit_hsps>
|
|
|
3312 </Hit>
|
|
|
3313 <Hit>
|
|
|
3314 <Hit_num>43</Hit_num>
|
|
|
3315 <Hit_id>gi|357380452|pdb|3J0L|8</Hit_id>
|
|
|
3316 <Hit_def>Chain 8, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1</Hit_def>
|
|
|
3317 <Hit_accession>3J0L_8</Hit_accession>
|
|
|
3318 <Hit_len>20</Hit_len>
|
|
|
3319 <Hit_hsps>
|
|
|
3320 <Hsp>
|
|
|
3321 <Hsp_num>1</Hsp_num>
|
|
|
3322 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
3323 <Hsp_score>9</Hsp_score>
|
|
|
3324 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
3325 <Hsp_query-from>4</Hsp_query-from>
|
|
|
3326 <Hsp_query-to>12</Hsp_query-to>
|
|
|
3327 <Hsp_hit-from>3</Hsp_hit-from>
|
|
|
3328 <Hsp_hit-to>11</Hsp_hit-to>
|
|
|
3329 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3330 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3331 <Hsp_identity>9</Hsp_identity>
|
|
|
3332 <Hsp_positive>9</Hsp_positive>
|
|
|
3333 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3334 <Hsp_align-len>9</Hsp_align-len>
|
|
|
3335 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
3336 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
3337 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
3338 </Hsp>
|
|
|
3339 </Hit_hsps>
|
|
|
3340 </Hit>
|
|
|
3341 <Hit>
|
|
|
3342 <Hit_num>44</Hit_num>
|
|
|
3343 <Hit_id>gi|357380483|pdb|3J0O|8</Hit_id>
|
|
|
3344 <Hit_def>Chain 8, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9a Cryo-Em Map: Classic Pre State 2</Hit_def>
|
|
|
3345 <Hit_accession>3J0O_8</Hit_accession>
|
|
|
3346 <Hit_len>20</Hit_len>
|
|
|
3347 <Hit_hsps>
|
|
|
3348 <Hsp>
|
|
|
3349 <Hsp_num>1</Hsp_num>
|
|
|
3350 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
3351 <Hsp_score>9</Hsp_score>
|
|
|
3352 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
3353 <Hsp_query-from>4</Hsp_query-from>
|
|
|
3354 <Hsp_query-to>12</Hsp_query-to>
|
|
|
3355 <Hsp_hit-from>3</Hsp_hit-from>
|
|
|
3356 <Hsp_hit-to>11</Hsp_hit-to>
|
|
|
3357 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3358 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3359 <Hsp_identity>9</Hsp_identity>
|
|
|
3360 <Hsp_positive>9</Hsp_positive>
|
|
|
3361 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3362 <Hsp_align-len>9</Hsp_align-len>
|
|
|
3363 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
3364 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
3365 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
3366 </Hsp>
|
|
|
3367 </Hit_hsps>
|
|
|
3368 </Hit>
|
|
|
3369 <Hit>
|
|
|
3370 <Hit_num>45</Hit_num>
|
|
|
3371 <Hit_id>gi|315113523|pdb|3O58|1</Hit_id>
|
|
|
3372 <Hit_def>Chain 1, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The First 80s In The Asymmetric Unit. >gi|418837761|pdb|4B6B|5 Chain 5, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex With Arx1 And Rei1 >gi|597959861|pdb|3J64|1 Chain 1, Arx1 Pre-60s Particle. This Entry Contains The Rrna.</Hit_def>
|
|
|
3373 <Hit_accession>3O58_1</Hit_accession>
|
|
|
3374 <Hit_len>3396</Hit_len>
|
|
|
3375 <Hit_hsps>
|
|
|
3376 <Hsp>
|
|
|
3377 <Hsp_num>1</Hsp_num>
|
|
|
3378 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
3379 <Hsp_score>9</Hsp_score>
|
|
|
3380 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
3381 <Hsp_query-from>4</Hsp_query-from>
|
|
|
3382 <Hsp_query-to>12</Hsp_query-to>
|
|
|
3383 <Hsp_hit-from>2959</Hsp_hit-from>
|
|
|
3384 <Hsp_hit-to>2967</Hsp_hit-to>
|
|
|
3385 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3386 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3387 <Hsp_identity>9</Hsp_identity>
|
|
|
3388 <Hsp_positive>9</Hsp_positive>
|
|
|
3389 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3390 <Hsp_align-len>9</Hsp_align-len>
|
|
|
3391 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
3392 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
3393 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
3394 </Hsp>
|
|
|
3395 <Hsp>
|
|
|
3396 <Hsp_num>2</Hsp_num>
|
|
|
3397 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
3398 <Hsp_score>8</Hsp_score>
|
|
|
3399 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
3400 <Hsp_query-from>8</Hsp_query-from>
|
|
|
3401 <Hsp_query-to>15</Hsp_query-to>
|
|
|
3402 <Hsp_hit-from>1634</Hsp_hit-from>
|
|
|
3403 <Hsp_hit-to>1627</Hsp_hit-to>
|
|
|
3404 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3405 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
3406 <Hsp_identity>8</Hsp_identity>
|
|
|
3407 <Hsp_positive>8</Hsp_positive>
|
|
|
3408 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3409 <Hsp_align-len>8</Hsp_align-len>
|
|
|
3410 <Hsp_qseq>CGTGAAGA</Hsp_qseq>
|
|
|
3411 <Hsp_hseq>CGTGAAGA</Hsp_hseq>
|
|
|
3412 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
3413 </Hsp>
|
|
|
3414 <Hsp>
|
|
|
3415 <Hsp_num>3</Hsp_num>
|
|
|
3416 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
3417 <Hsp_score>8</Hsp_score>
|
|
|
3418 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
3419 <Hsp_query-from>9</Hsp_query-from>
|
|
|
3420 <Hsp_query-to>16</Hsp_query-to>
|
|
|
3421 <Hsp_hit-from>2435</Hsp_hit-from>
|
|
|
3422 <Hsp_hit-to>2442</Hsp_hit-to>
|
|
|
3423 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3424 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3425 <Hsp_identity>8</Hsp_identity>
|
|
|
3426 <Hsp_positive>8</Hsp_positive>
|
|
|
3427 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3428 <Hsp_align-len>8</Hsp_align-len>
|
|
|
3429 <Hsp_qseq>GTGAAGAG</Hsp_qseq>
|
|
|
3430 <Hsp_hseq>GTGAAGAG</Hsp_hseq>
|
|
|
3431 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
3432 </Hsp>
|
|
|
3433 <Hsp>
|
|
|
3434 <Hsp_num>4</Hsp_num>
|
|
|
3435 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
3436 <Hsp_score>7</Hsp_score>
|
|
|
3437 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
3438 <Hsp_query-from>10</Hsp_query-from>
|
|
|
3439 <Hsp_query-to>16</Hsp_query-to>
|
|
|
3440 <Hsp_hit-from>1100</Hsp_hit-from>
|
|
|
3441 <Hsp_hit-to>1106</Hsp_hit-to>
|
|
|
3442 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3443 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3444 <Hsp_identity>7</Hsp_identity>
|
|
|
3445 <Hsp_positive>7</Hsp_positive>
|
|
|
3446 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3447 <Hsp_align-len>7</Hsp_align-len>
|
|
|
3448 <Hsp_qseq>TGAAGAG</Hsp_qseq>
|
|
|
3449 <Hsp_hseq>TGAAGAG</Hsp_hseq>
|
|
|
3450 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
3451 </Hsp>
|
|
|
3452 <Hsp>
|
|
|
3453 <Hsp_num>5</Hsp_num>
|
|
|
3454 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
3455 <Hsp_score>7</Hsp_score>
|
|
|
3456 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
3457 <Hsp_query-from>9</Hsp_query-from>
|
|
|
3458 <Hsp_query-to>15</Hsp_query-to>
|
|
|
3459 <Hsp_hit-from>2216</Hsp_hit-from>
|
|
|
3460 <Hsp_hit-to>2222</Hsp_hit-to>
|
|
|
3461 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3462 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3463 <Hsp_identity>7</Hsp_identity>
|
|
|
3464 <Hsp_positive>7</Hsp_positive>
|
|
|
3465 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3466 <Hsp_align-len>7</Hsp_align-len>
|
|
|
3467 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
3468 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
3469 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
3470 </Hsp>
|
|
|
3471 </Hit_hsps>
|
|
|
3472 </Hit>
|
|
|
3473 <Hit>
|
|
|
3474 <Hit_num>46</Hit_num>
|
|
|
3475 <Hit_id>gi|315113568|pdb|3O5H|1</Hit_id>
|
|
|
3476 <Hit_def>Chain 1, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The Second 80s In The Asymmetric Unit. >gi|364506130|pdb|3U5D|1 Chain 1, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Ribosomal Rna And Ions Of The 60s Subunit, Ribosome A >gi|364506168|pdb|3U5H|5 Chain 5, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Ribosomal Rna And Ions Of The 60s Subunit, Ribosome B</Hit_def>
|
|
|
3477 <Hit_accession>3O5H_1</Hit_accession>
|
|
|
3478 <Hit_len>3396</Hit_len>
|
|
|
3479 <Hit_hsps>
|
|
|
3480 <Hsp>
|
|
|
3481 <Hsp_num>1</Hsp_num>
|
|
|
3482 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
3483 <Hsp_score>9</Hsp_score>
|
|
|
3484 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
3485 <Hsp_query-from>4</Hsp_query-from>
|
|
|
3486 <Hsp_query-to>12</Hsp_query-to>
|
|
|
3487 <Hsp_hit-from>2959</Hsp_hit-from>
|
|
|
3488 <Hsp_hit-to>2967</Hsp_hit-to>
|
|
|
3489 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3490 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3491 <Hsp_identity>9</Hsp_identity>
|
|
|
3492 <Hsp_positive>9</Hsp_positive>
|
|
|
3493 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3494 <Hsp_align-len>9</Hsp_align-len>
|
|
|
3495 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
3496 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
3497 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
3498 </Hsp>
|
|
|
3499 <Hsp>
|
|
|
3500 <Hsp_num>2</Hsp_num>
|
|
|
3501 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
3502 <Hsp_score>8</Hsp_score>
|
|
|
3503 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
3504 <Hsp_query-from>8</Hsp_query-from>
|
|
|
3505 <Hsp_query-to>15</Hsp_query-to>
|
|
|
3506 <Hsp_hit-from>1634</Hsp_hit-from>
|
|
|
3507 <Hsp_hit-to>1627</Hsp_hit-to>
|
|
|
3508 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3509 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
3510 <Hsp_identity>8</Hsp_identity>
|
|
|
3511 <Hsp_positive>8</Hsp_positive>
|
|
|
3512 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3513 <Hsp_align-len>8</Hsp_align-len>
|
|
|
3514 <Hsp_qseq>CGTGAAGA</Hsp_qseq>
|
|
|
3515 <Hsp_hseq>CGTGAAGA</Hsp_hseq>
|
|
|
3516 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
3517 </Hsp>
|
|
|
3518 <Hsp>
|
|
|
3519 <Hsp_num>3</Hsp_num>
|
|
|
3520 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
3521 <Hsp_score>8</Hsp_score>
|
|
|
3522 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
3523 <Hsp_query-from>9</Hsp_query-from>
|
|
|
3524 <Hsp_query-to>16</Hsp_query-to>
|
|
|
3525 <Hsp_hit-from>2435</Hsp_hit-from>
|
|
|
3526 <Hsp_hit-to>2442</Hsp_hit-to>
|
|
|
3527 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3528 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3529 <Hsp_identity>8</Hsp_identity>
|
|
|
3530 <Hsp_positive>8</Hsp_positive>
|
|
|
3531 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3532 <Hsp_align-len>8</Hsp_align-len>
|
|
|
3533 <Hsp_qseq>GTGAAGAG</Hsp_qseq>
|
|
|
3534 <Hsp_hseq>GTGAAGAG</Hsp_hseq>
|
|
|
3535 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
3536 </Hsp>
|
|
|
3537 <Hsp>
|
|
|
3538 <Hsp_num>4</Hsp_num>
|
|
|
3539 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
3540 <Hsp_score>7</Hsp_score>
|
|
|
3541 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
3542 <Hsp_query-from>10</Hsp_query-from>
|
|
|
3543 <Hsp_query-to>16</Hsp_query-to>
|
|
|
3544 <Hsp_hit-from>1100</Hsp_hit-from>
|
|
|
3545 <Hsp_hit-to>1106</Hsp_hit-to>
|
|
|
3546 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3547 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3548 <Hsp_identity>7</Hsp_identity>
|
|
|
3549 <Hsp_positive>7</Hsp_positive>
|
|
|
3550 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3551 <Hsp_align-len>7</Hsp_align-len>
|
|
|
3552 <Hsp_qseq>TGAAGAG</Hsp_qseq>
|
|
|
3553 <Hsp_hseq>TGAAGAG</Hsp_hseq>
|
|
|
3554 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
3555 </Hsp>
|
|
|
3556 <Hsp>
|
|
|
3557 <Hsp_num>5</Hsp_num>
|
|
|
3558 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
3559 <Hsp_score>7</Hsp_score>
|
|
|
3560 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
3561 <Hsp_query-from>9</Hsp_query-from>
|
|
|
3562 <Hsp_query-to>15</Hsp_query-to>
|
|
|
3563 <Hsp_hit-from>2216</Hsp_hit-from>
|
|
|
3564 <Hsp_hit-to>2222</Hsp_hit-to>
|
|
|
3565 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3566 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3567 <Hsp_identity>7</Hsp_identity>
|
|
|
3568 <Hsp_positive>7</Hsp_positive>
|
|
|
3569 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3570 <Hsp_align-len>7</Hsp_align-len>
|
|
|
3571 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
3572 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
3573 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
3574 </Hsp>
|
|
|
3575 </Hit_hsps>
|
|
|
3576 </Hit>
|
|
|
3577 <Hit>
|
|
|
3578 <Hit_num>47</Hit_num>
|
|
|
3579 <Hit_id>gi|315113447|pdb|3O2Z|1</Hit_id>
|
|
|
3580 <Hit_def>Chain 1, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit Of The First 80s In The Asymmetric Unit.</Hit_def>
|
|
|
3581 <Hit_accession>3O2Z_1</Hit_accession>
|
|
|
3582 <Hit_len>1800</Hit_len>
|
|
|
3583 <Hit_hsps>
|
|
|
3584 <Hsp>
|
|
|
3585 <Hsp_num>1</Hsp_num>
|
|
|
3586 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
3587 <Hsp_score>9</Hsp_score>
|
|
|
3588 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
3589 <Hsp_query-from>3</Hsp_query-from>
|
|
|
3590 <Hsp_query-to>11</Hsp_query-to>
|
|
|
3591 <Hsp_hit-from>1528</Hsp_hit-from>
|
|
|
3592 <Hsp_hit-to>1536</Hsp_hit-to>
|
|
|
3593 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3594 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3595 <Hsp_identity>9</Hsp_identity>
|
|
|
3596 <Hsp_positive>9</Hsp_positive>
|
|
|
3597 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3598 <Hsp_align-len>9</Hsp_align-len>
|
|
|
3599 <Hsp_qseq>TCCGTCGTG</Hsp_qseq>
|
|
|
3600 <Hsp_hseq>TCCGTCGTG</Hsp_hseq>
|
|
|
3601 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
3602 </Hsp>
|
|
|
3603 <Hsp>
|
|
|
3604 <Hsp_num>2</Hsp_num>
|
|
|
3605 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
3606 <Hsp_score>7</Hsp_score>
|
|
|
3607 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
3608 <Hsp_query-from>4</Hsp_query-from>
|
|
|
3609 <Hsp_query-to>10</Hsp_query-to>
|
|
|
3610 <Hsp_hit-from>1006</Hsp_hit-from>
|
|
|
3611 <Hsp_hit-to>1012</Hsp_hit-to>
|
|
|
3612 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3613 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3614 <Hsp_identity>7</Hsp_identity>
|
|
|
3615 <Hsp_positive>7</Hsp_positive>
|
|
|
3616 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3617 <Hsp_align-len>7</Hsp_align-len>
|
|
|
3618 <Hsp_qseq>CCGTCGT</Hsp_qseq>
|
|
|
3619 <Hsp_hseq>CCGTCGT</Hsp_hseq>
|
|
|
3620 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
3621 </Hsp>
|
|
|
3622 <Hsp>
|
|
|
3623 <Hsp_num>3</Hsp_num>
|
|
|
3624 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
3625 <Hsp_score>7</Hsp_score>
|
|
|
3626 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
3627 <Hsp_query-from>10</Hsp_query-from>
|
|
|
3628 <Hsp_query-to>16</Hsp_query-to>
|
|
|
3629 <Hsp_hit-from>1569</Hsp_hit-from>
|
|
|
3630 <Hsp_hit-to>1563</Hsp_hit-to>
|
|
|
3631 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3632 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
3633 <Hsp_identity>7</Hsp_identity>
|
|
|
3634 <Hsp_positive>7</Hsp_positive>
|
|
|
3635 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3636 <Hsp_align-len>7</Hsp_align-len>
|
|
|
3637 <Hsp_qseq>TGAAGAG</Hsp_qseq>
|
|
|
3638 <Hsp_hseq>TGAAGAG</Hsp_hseq>
|
|
|
3639 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
3640 </Hsp>
|
|
|
3641 </Hit_hsps>
|
|
|
3642 </Hit>
|
|
|
3643 <Hit>
|
|
|
3644 <Hit_num>48</Hit_num>
|
|
|
3645 <Hit_id>gi|315113475|pdb|3O30|1</Hit_id>
|
|
|
3646 <Hit_def>Chain 1, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit Of The Second 80s In The Asymmetric Unit.</Hit_def>
|
|
|
3647 <Hit_accession>3O30_1</Hit_accession>
|
|
|
3648 <Hit_len>1800</Hit_len>
|
|
|
3649 <Hit_hsps>
|
|
|
3650 <Hsp>
|
|
|
3651 <Hsp_num>1</Hsp_num>
|
|
|
3652 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
3653 <Hsp_score>9</Hsp_score>
|
|
|
3654 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
3655 <Hsp_query-from>3</Hsp_query-from>
|
|
|
3656 <Hsp_query-to>11</Hsp_query-to>
|
|
|
3657 <Hsp_hit-from>1528</Hsp_hit-from>
|
|
|
3658 <Hsp_hit-to>1536</Hsp_hit-to>
|
|
|
3659 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3660 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3661 <Hsp_identity>9</Hsp_identity>
|
|
|
3662 <Hsp_positive>9</Hsp_positive>
|
|
|
3663 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3664 <Hsp_align-len>9</Hsp_align-len>
|
|
|
3665 <Hsp_qseq>TCCGTCGTG</Hsp_qseq>
|
|
|
3666 <Hsp_hseq>TCCGTCGTG</Hsp_hseq>
|
|
|
3667 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
3668 </Hsp>
|
|
|
3669 <Hsp>
|
|
|
3670 <Hsp_num>2</Hsp_num>
|
|
|
3671 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
3672 <Hsp_score>7</Hsp_score>
|
|
|
3673 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
3674 <Hsp_query-from>4</Hsp_query-from>
|
|
|
3675 <Hsp_query-to>10</Hsp_query-to>
|
|
|
3676 <Hsp_hit-from>1006</Hsp_hit-from>
|
|
|
3677 <Hsp_hit-to>1012</Hsp_hit-to>
|
|
|
3678 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3679 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3680 <Hsp_identity>7</Hsp_identity>
|
|
|
3681 <Hsp_positive>7</Hsp_positive>
|
|
|
3682 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3683 <Hsp_align-len>7</Hsp_align-len>
|
|
|
3684 <Hsp_qseq>CCGTCGT</Hsp_qseq>
|
|
|
3685 <Hsp_hseq>CCGTCGT</Hsp_hseq>
|
|
|
3686 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
3687 </Hsp>
|
|
|
3688 <Hsp>
|
|
|
3689 <Hsp_num>3</Hsp_num>
|
|
|
3690 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
3691 <Hsp_score>7</Hsp_score>
|
|
|
3692 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
3693 <Hsp_query-from>10</Hsp_query-from>
|
|
|
3694 <Hsp_query-to>16</Hsp_query-to>
|
|
|
3695 <Hsp_hit-from>1569</Hsp_hit-from>
|
|
|
3696 <Hsp_hit-to>1563</Hsp_hit-to>
|
|
|
3697 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3698 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
3699 <Hsp_identity>7</Hsp_identity>
|
|
|
3700 <Hsp_positive>7</Hsp_positive>
|
|
|
3701 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3702 <Hsp_align-len>7</Hsp_align-len>
|
|
|
3703 <Hsp_qseq>TGAAGAG</Hsp_qseq>
|
|
|
3704 <Hsp_hseq>TGAAGAG</Hsp_hseq>
|
|
|
3705 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
3706 </Hsp>
|
|
|
3707 </Hit_hsps>
|
|
|
3708 </Hit>
|
|
|
3709 <Hit>
|
|
|
3710 <Hit_num>49</Hit_num>
|
|
|
3711 <Hit_id>gi|313103747|pdb|3IZF|A</Hit_id>
|
|
|
3712 <Hit_def>Chain A, Model Of The Large Subunit Rna Based On A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome (With Es27l-In Conformation)</Hit_def>
|
|
|
3713 <Hit_accession>3IZF_A</Hit_accession>
|
|
|
3714 <Hit_len>3396</Hit_len>
|
|
|
3715 <Hit_hsps>
|
|
|
3716 <Hsp>
|
|
|
3717 <Hsp_num>1</Hsp_num>
|
|
|
3718 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
3719 <Hsp_score>9</Hsp_score>
|
|
|
3720 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
3721 <Hsp_query-from>4</Hsp_query-from>
|
|
|
3722 <Hsp_query-to>12</Hsp_query-to>
|
|
|
3723 <Hsp_hit-from>2959</Hsp_hit-from>
|
|
|
3724 <Hsp_hit-to>2967</Hsp_hit-to>
|
|
|
3725 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3726 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3727 <Hsp_identity>9</Hsp_identity>
|
|
|
3728 <Hsp_positive>9</Hsp_positive>
|
|
|
3729 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3730 <Hsp_align-len>9</Hsp_align-len>
|
|
|
3731 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
3732 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
3733 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
3734 </Hsp>
|
|
|
3735 <Hsp>
|
|
|
3736 <Hsp_num>2</Hsp_num>
|
|
|
3737 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
3738 <Hsp_score>8</Hsp_score>
|
|
|
3739 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
3740 <Hsp_query-from>8</Hsp_query-from>
|
|
|
3741 <Hsp_query-to>15</Hsp_query-to>
|
|
|
3742 <Hsp_hit-from>1634</Hsp_hit-from>
|
|
|
3743 <Hsp_hit-to>1627</Hsp_hit-to>
|
|
|
3744 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3745 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
3746 <Hsp_identity>8</Hsp_identity>
|
|
|
3747 <Hsp_positive>8</Hsp_positive>
|
|
|
3748 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3749 <Hsp_align-len>8</Hsp_align-len>
|
|
|
3750 <Hsp_qseq>CGTGAAGA</Hsp_qseq>
|
|
|
3751 <Hsp_hseq>CGTGAAGA</Hsp_hseq>
|
|
|
3752 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
3753 </Hsp>
|
|
|
3754 <Hsp>
|
|
|
3755 <Hsp_num>3</Hsp_num>
|
|
|
3756 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
3757 <Hsp_score>8</Hsp_score>
|
|
|
3758 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
3759 <Hsp_query-from>9</Hsp_query-from>
|
|
|
3760 <Hsp_query-to>16</Hsp_query-to>
|
|
|
3761 <Hsp_hit-from>2435</Hsp_hit-from>
|
|
|
3762 <Hsp_hit-to>2442</Hsp_hit-to>
|
|
|
3763 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3764 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3765 <Hsp_identity>8</Hsp_identity>
|
|
|
3766 <Hsp_positive>8</Hsp_positive>
|
|
|
3767 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3768 <Hsp_align-len>8</Hsp_align-len>
|
|
|
3769 <Hsp_qseq>GTGAAGAG</Hsp_qseq>
|
|
|
3770 <Hsp_hseq>GTGAAGAG</Hsp_hseq>
|
|
|
3771 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
3772 </Hsp>
|
|
|
3773 <Hsp>
|
|
|
3774 <Hsp_num>4</Hsp_num>
|
|
|
3775 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
3776 <Hsp_score>7</Hsp_score>
|
|
|
3777 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
3778 <Hsp_query-from>10</Hsp_query-from>
|
|
|
3779 <Hsp_query-to>16</Hsp_query-to>
|
|
|
3780 <Hsp_hit-from>1100</Hsp_hit-from>
|
|
|
3781 <Hsp_hit-to>1106</Hsp_hit-to>
|
|
|
3782 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3783 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3784 <Hsp_identity>7</Hsp_identity>
|
|
|
3785 <Hsp_positive>7</Hsp_positive>
|
|
|
3786 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3787 <Hsp_align-len>7</Hsp_align-len>
|
|
|
3788 <Hsp_qseq>TGAAGAG</Hsp_qseq>
|
|
|
3789 <Hsp_hseq>TGAAGAG</Hsp_hseq>
|
|
|
3790 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
3791 </Hsp>
|
|
|
3792 <Hsp>
|
|
|
3793 <Hsp_num>5</Hsp_num>
|
|
|
3794 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
3795 <Hsp_score>7</Hsp_score>
|
|
|
3796 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
3797 <Hsp_query-from>9</Hsp_query-from>
|
|
|
3798 <Hsp_query-to>15</Hsp_query-to>
|
|
|
3799 <Hsp_hit-from>2216</Hsp_hit-from>
|
|
|
3800 <Hsp_hit-to>2222</Hsp_hit-to>
|
|
|
3801 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3802 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3803 <Hsp_identity>7</Hsp_identity>
|
|
|
3804 <Hsp_positive>7</Hsp_positive>
|
|
|
3805 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3806 <Hsp_align-len>7</Hsp_align-len>
|
|
|
3807 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
3808 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
3809 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
3810 </Hsp>
|
|
|
3811 </Hit_hsps>
|
|
|
3812 </Hit>
|
|
|
3813 <Hit>
|
|
|
3814 <Hit_num>50</Hit_num>
|
|
|
3815 <Hit_id>gi|313103744|pdb|3IZE|A</Hit_id>
|
|
|
3816 <Hit_def>Chain A, Model Of The Small Subunit Rna Based On A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome</Hit_def>
|
|
|
3817 <Hit_accession>3IZE_A</Hit_accession>
|
|
|
3818 <Hit_len>1800</Hit_len>
|
|
|
3819 <Hit_hsps>
|
|
|
3820 <Hsp>
|
|
|
3821 <Hsp_num>1</Hsp_num>
|
|
|
3822 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
3823 <Hsp_score>9</Hsp_score>
|
|
|
3824 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
3825 <Hsp_query-from>3</Hsp_query-from>
|
|
|
3826 <Hsp_query-to>11</Hsp_query-to>
|
|
|
3827 <Hsp_hit-from>1528</Hsp_hit-from>
|
|
|
3828 <Hsp_hit-to>1536</Hsp_hit-to>
|
|
|
3829 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3830 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3831 <Hsp_identity>9</Hsp_identity>
|
|
|
3832 <Hsp_positive>9</Hsp_positive>
|
|
|
3833 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3834 <Hsp_align-len>9</Hsp_align-len>
|
|
|
3835 <Hsp_qseq>TCCGTCGTG</Hsp_qseq>
|
|
|
3836 <Hsp_hseq>TCCGTCGTG</Hsp_hseq>
|
|
|
3837 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
3838 </Hsp>
|
|
|
3839 <Hsp>
|
|
|
3840 <Hsp_num>2</Hsp_num>
|
|
|
3841 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
3842 <Hsp_score>7</Hsp_score>
|
|
|
3843 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
3844 <Hsp_query-from>4</Hsp_query-from>
|
|
|
3845 <Hsp_query-to>10</Hsp_query-to>
|
|
|
3846 <Hsp_hit-from>1006</Hsp_hit-from>
|
|
|
3847 <Hsp_hit-to>1012</Hsp_hit-to>
|
|
|
3848 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3849 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3850 <Hsp_identity>7</Hsp_identity>
|
|
|
3851 <Hsp_positive>7</Hsp_positive>
|
|
|
3852 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3853 <Hsp_align-len>7</Hsp_align-len>
|
|
|
3854 <Hsp_qseq>CCGTCGT</Hsp_qseq>
|
|
|
3855 <Hsp_hseq>CCGTCGT</Hsp_hseq>
|
|
|
3856 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
3857 </Hsp>
|
|
|
3858 <Hsp>
|
|
|
3859 <Hsp_num>3</Hsp_num>
|
|
|
3860 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
3861 <Hsp_score>7</Hsp_score>
|
|
|
3862 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
3863 <Hsp_query-from>10</Hsp_query-from>
|
|
|
3864 <Hsp_query-to>16</Hsp_query-to>
|
|
|
3865 <Hsp_hit-from>1569</Hsp_hit-from>
|
|
|
3866 <Hsp_hit-to>1563</Hsp_hit-to>
|
|
|
3867 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3868 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
3869 <Hsp_identity>7</Hsp_identity>
|
|
|
3870 <Hsp_positive>7</Hsp_positive>
|
|
|
3871 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3872 <Hsp_align-len>7</Hsp_align-len>
|
|
|
3873 <Hsp_qseq>TGAAGAG</Hsp_qseq>
|
|
|
3874 <Hsp_hseq>TGAAGAG</Hsp_hseq>
|
|
|
3875 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
3876 </Hsp>
|
|
|
3877 </Hit_hsps>
|
|
|
3878 </Hit>
|
|
|
3879 <Hit>
|
|
|
3880 <Hit_num>51</Hit_num>
|
|
|
3881 <Hit_id>gi|296278448|pdb|3KO2|I</Hit_id>
|
|
|
3882 <Hit_def>Chain I, I-Msoi Re-Designed For Altered Dna Cleavage Specificity (-7c)</Hit_def>
|
|
|
3883 <Hit_accession>3KO2_I</Hit_accession>
|
|
|
3884 <Hit_len>24</Hit_len>
|
|
|
3885 <Hit_hsps>
|
|
|
3886 <Hsp>
|
|
|
3887 <Hsp_num>1</Hsp_num>
|
|
|
3888 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
3889 <Hsp_score>9</Hsp_score>
|
|
|
3890 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
3891 <Hsp_query-from>4</Hsp_query-from>
|
|
|
3892 <Hsp_query-to>12</Hsp_query-to>
|
|
|
3893 <Hsp_hit-from>19</Hsp_hit-from>
|
|
|
3894 <Hsp_hit-to>11</Hsp_hit-to>
|
|
|
3895 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3896 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
3897 <Hsp_identity>9</Hsp_identity>
|
|
|
3898 <Hsp_positive>9</Hsp_positive>
|
|
|
3899 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3900 <Hsp_align-len>9</Hsp_align-len>
|
|
|
3901 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
3902 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
3903 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
3904 </Hsp>
|
|
|
3905 </Hit_hsps>
|
|
|
3906 </Hit>
|
|
|
3907 <Hit>
|
|
|
3908 <Hit_num>52</Hit_num>
|
|
|
3909 <Hit_id>gi|296278447|pdb|3KO2|H</Hit_id>
|
|
|
3910 <Hit_def>Chain H, I-Msoi Re-Designed For Altered Dna Cleavage Specificity (-7c)</Hit_def>
|
|
|
3911 <Hit_accession>3KO2_H</Hit_accession>
|
|
|
3912 <Hit_len>24</Hit_len>
|
|
|
3913 <Hit_hsps>
|
|
|
3914 <Hsp>
|
|
|
3915 <Hsp_num>1</Hsp_num>
|
|
|
3916 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
3917 <Hsp_score>9</Hsp_score>
|
|
|
3918 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
3919 <Hsp_query-from>4</Hsp_query-from>
|
|
|
3920 <Hsp_query-to>12</Hsp_query-to>
|
|
|
3921 <Hsp_hit-from>6</Hsp_hit-from>
|
|
|
3922 <Hsp_hit-to>14</Hsp_hit-to>
|
|
|
3923 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3924 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3925 <Hsp_identity>9</Hsp_identity>
|
|
|
3926 <Hsp_positive>9</Hsp_positive>
|
|
|
3927 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3928 <Hsp_align-len>9</Hsp_align-len>
|
|
|
3929 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
3930 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
3931 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
3932 </Hsp>
|
|
|
3933 </Hit_hsps>
|
|
|
3934 </Hit>
|
|
|
3935 <Hit>
|
|
|
3936 <Hit_num>53</Hit_num>
|
|
|
3937 <Hit_id>gi|296278444|pdb|3KO2|D</Hit_id>
|
|
|
3938 <Hit_def>Chain D, I-Msoi Re-Designed For Altered Dna Cleavage Specificity (-7c)</Hit_def>
|
|
|
3939 <Hit_accession>3KO2_D</Hit_accession>
|
|
|
3940 <Hit_len>24</Hit_len>
|
|
|
3941 <Hit_hsps>
|
|
|
3942 <Hsp>
|
|
|
3943 <Hsp_num>1</Hsp_num>
|
|
|
3944 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
3945 <Hsp_score>9</Hsp_score>
|
|
|
3946 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
3947 <Hsp_query-from>4</Hsp_query-from>
|
|
|
3948 <Hsp_query-to>12</Hsp_query-to>
|
|
|
3949 <Hsp_hit-from>19</Hsp_hit-from>
|
|
|
3950 <Hsp_hit-to>11</Hsp_hit-to>
|
|
|
3951 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3952 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
3953 <Hsp_identity>9</Hsp_identity>
|
|
|
3954 <Hsp_positive>9</Hsp_positive>
|
|
|
3955 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3956 <Hsp_align-len>9</Hsp_align-len>
|
|
|
3957 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
3958 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
3959 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
3960 </Hsp>
|
|
|
3961 </Hit_hsps>
|
|
|
3962 </Hit>
|
|
|
3963 <Hit>
|
|
|
3964 <Hit_num>54</Hit_num>
|
|
|
3965 <Hit_id>gi|296278443|pdb|3KO2|C</Hit_id>
|
|
|
3966 <Hit_def>Chain C, I-Msoi Re-Designed For Altered Dna Cleavage Specificity (-7c)</Hit_def>
|
|
|
3967 <Hit_accession>3KO2_C</Hit_accession>
|
|
|
3968 <Hit_len>24</Hit_len>
|
|
|
3969 <Hit_hsps>
|
|
|
3970 <Hsp>
|
|
|
3971 <Hsp_num>1</Hsp_num>
|
|
|
3972 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
3973 <Hsp_score>9</Hsp_score>
|
|
|
3974 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
3975 <Hsp_query-from>4</Hsp_query-from>
|
|
|
3976 <Hsp_query-to>12</Hsp_query-to>
|
|
|
3977 <Hsp_hit-from>6</Hsp_hit-from>
|
|
|
3978 <Hsp_hit-to>14</Hsp_hit-to>
|
|
|
3979 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
3980 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
3981 <Hsp_identity>9</Hsp_identity>
|
|
|
3982 <Hsp_positive>9</Hsp_positive>
|
|
|
3983 <Hsp_gaps>0</Hsp_gaps>
|
|
|
3984 <Hsp_align-len>9</Hsp_align-len>
|
|
|
3985 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
3986 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
3987 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
3988 </Hsp>
|
|
|
3989 </Hit_hsps>
|
|
|
3990 </Hit>
|
|
|
3991 <Hit>
|
|
|
3992 <Hit_num>55</Hit_num>
|
|
|
3993 <Hit_id>gi|290790096|pdb|3I56|0</Hit_id>
|
|
|
3994 <Hit_def>Chain 0, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The Large Ribosomal Subunit</Hit_def>
|
|
|
3995 <Hit_accession>3I56_0</Hit_accession>
|
|
|
3996 <Hit_len>2923</Hit_len>
|
|
|
3997 <Hit_hsps>
|
|
|
3998 <Hsp>
|
|
|
3999 <Hsp_num>1</Hsp_num>
|
|
|
4000 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4001 <Hsp_score>9</Hsp_score>
|
|
|
4002 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4003 <Hsp_query-from>7</Hsp_query-from>
|
|
|
4004 <Hsp_query-to>15</Hsp_query-to>
|
|
|
4005 <Hsp_hit-from>305</Hsp_hit-from>
|
|
|
4006 <Hsp_hit-to>297</Hsp_hit-to>
|
|
|
4007 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4008 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
4009 <Hsp_identity>9</Hsp_identity>
|
|
|
4010 <Hsp_positive>9</Hsp_positive>
|
|
|
4011 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4012 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4013 <Hsp_qseq>TCGTGAAGA</Hsp_qseq>
|
|
|
4014 <Hsp_hseq>TCGTGAAGA</Hsp_hseq>
|
|
|
4015 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4016 </Hsp>
|
|
|
4017 <Hsp>
|
|
|
4018 <Hsp_num>2</Hsp_num>
|
|
|
4019 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4020 <Hsp_score>9</Hsp_score>
|
|
|
4021 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4022 <Hsp_query-from>4</Hsp_query-from>
|
|
|
4023 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4024 <Hsp_hit-from>2625</Hsp_hit-from>
|
|
|
4025 <Hsp_hit-to>2633</Hsp_hit-to>
|
|
|
4026 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4027 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4028 <Hsp_identity>9</Hsp_identity>
|
|
|
4029 <Hsp_positive>9</Hsp_positive>
|
|
|
4030 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4031 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4032 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
4033 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
4034 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4035 </Hsp>
|
|
|
4036 <Hsp>
|
|
|
4037 <Hsp_num>3</Hsp_num>
|
|
|
4038 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
4039 <Hsp_score>7</Hsp_score>
|
|
|
4040 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
4041 <Hsp_query-from>6</Hsp_query-from>
|
|
|
4042 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4043 <Hsp_hit-from>2606</Hsp_hit-from>
|
|
|
4044 <Hsp_hit-to>2612</Hsp_hit-to>
|
|
|
4045 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4046 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4047 <Hsp_identity>7</Hsp_identity>
|
|
|
4048 <Hsp_positive>7</Hsp_positive>
|
|
|
4049 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4050 <Hsp_align-len>7</Hsp_align-len>
|
|
|
4051 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
4052 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
4053 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
4054 </Hsp>
|
|
|
4055 </Hit_hsps>
|
|
|
4056 </Hit>
|
|
|
4057 <Hit>
|
|
|
4058 <Hit_num>56</Hit_num>
|
|
|
4059 <Hit_id>gi|281500859|pdb|3JYX|5</Hit_id>
|
|
|
4060 <Hit_def>Chain 5, Structure Of The 60s Rrna For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution</Hit_def>
|
|
|
4061 <Hit_accession>3JYX_5</Hit_accession>
|
|
|
4062 <Hit_len>3170</Hit_len>
|
|
|
4063 <Hit_hsps>
|
|
|
4064 <Hsp>
|
|
|
4065 <Hsp_num>1</Hsp_num>
|
|
|
4066 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4067 <Hsp_score>9</Hsp_score>
|
|
|
4068 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4069 <Hsp_query-from>4</Hsp_query-from>
|
|
|
4070 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4071 <Hsp_hit-from>2740</Hsp_hit-from>
|
|
|
4072 <Hsp_hit-to>2748</Hsp_hit-to>
|
|
|
4073 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4074 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4075 <Hsp_identity>9</Hsp_identity>
|
|
|
4076 <Hsp_positive>9</Hsp_positive>
|
|
|
4077 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4078 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4079 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
4080 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
4081 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4082 </Hsp>
|
|
|
4083 <Hsp>
|
|
|
4084 <Hsp_num>2</Hsp_num>
|
|
|
4085 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
4086 <Hsp_score>8</Hsp_score>
|
|
|
4087 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
4088 <Hsp_query-from>8</Hsp_query-from>
|
|
|
4089 <Hsp_query-to>15</Hsp_query-to>
|
|
|
4090 <Hsp_hit-from>1587</Hsp_hit-from>
|
|
|
4091 <Hsp_hit-to>1580</Hsp_hit-to>
|
|
|
4092 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4093 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
4094 <Hsp_identity>8</Hsp_identity>
|
|
|
4095 <Hsp_positive>8</Hsp_positive>
|
|
|
4096 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4097 <Hsp_align-len>8</Hsp_align-len>
|
|
|
4098 <Hsp_qseq>CGTGAAGA</Hsp_qseq>
|
|
|
4099 <Hsp_hseq>CGTGAAGA</Hsp_hseq>
|
|
|
4100 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
4101 </Hsp>
|
|
|
4102 <Hsp>
|
|
|
4103 <Hsp_num>3</Hsp_num>
|
|
|
4104 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
4105 <Hsp_score>8</Hsp_score>
|
|
|
4106 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
4107 <Hsp_query-from>9</Hsp_query-from>
|
|
|
4108 <Hsp_query-to>16</Hsp_query-to>
|
|
|
4109 <Hsp_hit-from>2222</Hsp_hit-from>
|
|
|
4110 <Hsp_hit-to>2229</Hsp_hit-to>
|
|
|
4111 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4112 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4113 <Hsp_identity>8</Hsp_identity>
|
|
|
4114 <Hsp_positive>8</Hsp_positive>
|
|
|
4115 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4116 <Hsp_align-len>8</Hsp_align-len>
|
|
|
4117 <Hsp_qseq>GTGAAGAG</Hsp_qseq>
|
|
|
4118 <Hsp_hseq>GTGAAGAG</Hsp_hseq>
|
|
|
4119 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
4120 </Hsp>
|
|
|
4121 <Hsp>
|
|
|
4122 <Hsp_num>4</Hsp_num>
|
|
|
4123 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
4124 <Hsp_score>7</Hsp_score>
|
|
|
4125 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
4126 <Hsp_query-from>6</Hsp_query-from>
|
|
|
4127 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4128 <Hsp_hit-from>1344</Hsp_hit-from>
|
|
|
4129 <Hsp_hit-to>1350</Hsp_hit-to>
|
|
|
4130 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4131 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4132 <Hsp_identity>7</Hsp_identity>
|
|
|
4133 <Hsp_positive>7</Hsp_positive>
|
|
|
4134 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4135 <Hsp_align-len>7</Hsp_align-len>
|
|
|
4136 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
4137 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
4138 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
4139 </Hsp>
|
|
|
4140 <Hsp>
|
|
|
4141 <Hsp_num>5</Hsp_num>
|
|
|
4142 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
4143 <Hsp_score>7</Hsp_score>
|
|
|
4144 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
4145 <Hsp_query-from>9</Hsp_query-from>
|
|
|
4146 <Hsp_query-to>15</Hsp_query-to>
|
|
|
4147 <Hsp_hit-from>2003</Hsp_hit-from>
|
|
|
4148 <Hsp_hit-to>2009</Hsp_hit-to>
|
|
|
4149 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4150 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4151 <Hsp_identity>7</Hsp_identity>
|
|
|
4152 <Hsp_positive>7</Hsp_positive>
|
|
|
4153 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4154 <Hsp_align-len>7</Hsp_align-len>
|
|
|
4155 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
4156 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
4157 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
4158 </Hsp>
|
|
|
4159 </Hit_hsps>
|
|
|
4160 </Hit>
|
|
|
4161 <Hit>
|
|
|
4162 <Hit_num>57</Hit_num>
|
|
|
4163 <Hit_id>gi|281500807|pdb|3JYV|A</Hit_id>
|
|
|
4164 <Hit_def>Chain A, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution</Hit_def>
|
|
|
4165 <Hit_accession>3JYV_A</Hit_accession>
|
|
|
4166 <Hit_len>1761</Hit_len>
|
|
|
4167 <Hit_hsps>
|
|
|
4168 <Hsp>
|
|
|
4169 <Hsp_num>1</Hsp_num>
|
|
|
4170 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4171 <Hsp_score>9</Hsp_score>
|
|
|
4172 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4173 <Hsp_query-from>3</Hsp_query-from>
|
|
|
4174 <Hsp_query-to>11</Hsp_query-to>
|
|
|
4175 <Hsp_hit-from>1492</Hsp_hit-from>
|
|
|
4176 <Hsp_hit-to>1500</Hsp_hit-to>
|
|
|
4177 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4178 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4179 <Hsp_identity>9</Hsp_identity>
|
|
|
4180 <Hsp_positive>9</Hsp_positive>
|
|
|
4181 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4182 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4183 <Hsp_qseq>TCCGTCGTG</Hsp_qseq>
|
|
|
4184 <Hsp_hseq>TCCGTCGTG</Hsp_hseq>
|
|
|
4185 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4186 </Hsp>
|
|
|
4187 <Hsp>
|
|
|
4188 <Hsp_num>2</Hsp_num>
|
|
|
4189 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
4190 <Hsp_score>7</Hsp_score>
|
|
|
4191 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
4192 <Hsp_query-from>4</Hsp_query-from>
|
|
|
4193 <Hsp_query-to>10</Hsp_query-to>
|
|
|
4194 <Hsp_hit-from>981</Hsp_hit-from>
|
|
|
4195 <Hsp_hit-to>987</Hsp_hit-to>
|
|
|
4196 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4197 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4198 <Hsp_identity>7</Hsp_identity>
|
|
|
4199 <Hsp_positive>7</Hsp_positive>
|
|
|
4200 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4201 <Hsp_align-len>7</Hsp_align-len>
|
|
|
4202 <Hsp_qseq>CCGTCGT</Hsp_qseq>
|
|
|
4203 <Hsp_hseq>CCGTCGT</Hsp_hseq>
|
|
|
4204 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
4205 </Hsp>
|
|
|
4206 <Hsp>
|
|
|
4207 <Hsp_num>3</Hsp_num>
|
|
|
4208 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
4209 <Hsp_score>7</Hsp_score>
|
|
|
4210 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
4211 <Hsp_query-from>10</Hsp_query-from>
|
|
|
4212 <Hsp_query-to>16</Hsp_query-to>
|
|
|
4213 <Hsp_hit-from>1533</Hsp_hit-from>
|
|
|
4214 <Hsp_hit-to>1527</Hsp_hit-to>
|
|
|
4215 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4216 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
4217 <Hsp_identity>7</Hsp_identity>
|
|
|
4218 <Hsp_positive>7</Hsp_positive>
|
|
|
4219 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4220 <Hsp_align-len>7</Hsp_align-len>
|
|
|
4221 <Hsp_qseq>TGAAGAG</Hsp_qseq>
|
|
|
4222 <Hsp_hseq>TGAAGAG</Hsp_hseq>
|
|
|
4223 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
4224 </Hsp>
|
|
|
4225 </Hit_hsps>
|
|
|
4226 </Hit>
|
|
|
4227 <Hit>
|
|
|
4228 <Hit_num>58</Hit_num>
|
|
|
4229 <Hit_id>gi|259090425|pdb|1S1I|3</Hit_id>
|
|
|
4230 <Hit_def>Chain 3, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h.</Hit_def>
|
|
|
4231 <Hit_accession>1S1I_3</Hit_accession>
|
|
|
4232 <Hit_len>2999</Hit_len>
|
|
|
4233 <Hit_hsps>
|
|
|
4234 <Hsp>
|
|
|
4235 <Hsp_num>1</Hsp_num>
|
|
|
4236 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4237 <Hsp_score>9</Hsp_score>
|
|
|
4238 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4239 <Hsp_query-from>4</Hsp_query-from>
|
|
|
4240 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4241 <Hsp_hit-from>2710</Hsp_hit-from>
|
|
|
4242 <Hsp_hit-to>2718</Hsp_hit-to>
|
|
|
4243 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4244 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4245 <Hsp_identity>9</Hsp_identity>
|
|
|
4246 <Hsp_positive>9</Hsp_positive>
|
|
|
4247 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4248 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4249 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
4250 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
4251 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4252 </Hsp>
|
|
|
4253 <Hsp>
|
|
|
4254 <Hsp_num>2</Hsp_num>
|
|
|
4255 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
4256 <Hsp_score>7</Hsp_score>
|
|
|
4257 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
4258 <Hsp_query-from>6</Hsp_query-from>
|
|
|
4259 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4260 <Hsp_hit-from>2691</Hsp_hit-from>
|
|
|
4261 <Hsp_hit-to>2697</Hsp_hit-to>
|
|
|
4262 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4263 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4264 <Hsp_identity>7</Hsp_identity>
|
|
|
4265 <Hsp_positive>7</Hsp_positive>
|
|
|
4266 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4267 <Hsp_align-len>7</Hsp_align-len>
|
|
|
4268 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
4269 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
4270 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
4271 </Hsp>
|
|
|
4272 </Hit_hsps>
|
|
|
4273 </Hit>
|
|
|
4274 <Hit>
|
|
|
4275 <Hit_num>59</Hit_num>
|
|
|
4276 <Hit_id>gi|208435493|pdb|2QEX|0</Hit_id>
|
|
|
4277 <Hit_def>Chain 0, Negamycin Binds To The Wall Of The Nascent Chain Exit Tunnel Of The 50s Ribosomal Subunit</Hit_def>
|
|
|
4278 <Hit_accession>2QEX_0</Hit_accession>
|
|
|
4279 <Hit_len>2772</Hit_len>
|
|
|
4280 <Hit_hsps>
|
|
|
4281 <Hsp>
|
|
|
4282 <Hsp_num>1</Hsp_num>
|
|
|
4283 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4284 <Hsp_score>9</Hsp_score>
|
|
|
4285 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4286 <Hsp_query-from>4</Hsp_query-from>
|
|
|
4287 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4288 <Hsp_hit-from>2476</Hsp_hit-from>
|
|
|
4289 <Hsp_hit-to>2484</Hsp_hit-to>
|
|
|
4290 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4291 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4292 <Hsp_identity>9</Hsp_identity>
|
|
|
4293 <Hsp_positive>9</Hsp_positive>
|
|
|
4294 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4295 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4296 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
4297 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
4298 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4299 </Hsp>
|
|
|
4300 <Hsp>
|
|
|
4301 <Hsp_num>2</Hsp_num>
|
|
|
4302 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
4303 <Hsp_score>7</Hsp_score>
|
|
|
4304 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
4305 <Hsp_query-from>6</Hsp_query-from>
|
|
|
4306 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4307 <Hsp_hit-from>2457</Hsp_hit-from>
|
|
|
4308 <Hsp_hit-to>2463</Hsp_hit-to>
|
|
|
4309 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4310 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4311 <Hsp_identity>7</Hsp_identity>
|
|
|
4312 <Hsp_positive>7</Hsp_positive>
|
|
|
4313 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4314 <Hsp_align-len>7</Hsp_align-len>
|
|
|
4315 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
4316 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
4317 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
4318 </Hsp>
|
|
|
4319 </Hit_hsps>
|
|
|
4320 </Hit>
|
|
|
4321 <Hit>
|
|
|
4322 <Hit_num>60</Hit_num>
|
|
|
4323 <Hit_id>gi|194368703|pdb|3CPW|0</Hit_id>
|
|
|
4324 <Hit_def>Chain 0, The Structure Of The Antibiotic Linezolid Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui</Hit_def>
|
|
|
4325 <Hit_accession>3CPW_0</Hit_accession>
|
|
|
4326 <Hit_len>2922</Hit_len>
|
|
|
4327 <Hit_hsps>
|
|
|
4328 <Hsp>
|
|
|
4329 <Hsp_num>1</Hsp_num>
|
|
|
4330 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4331 <Hsp_score>9</Hsp_score>
|
|
|
4332 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4333 <Hsp_query-from>4</Hsp_query-from>
|
|
|
4334 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4335 <Hsp_hit-from>2624</Hsp_hit-from>
|
|
|
4336 <Hsp_hit-to>2632</Hsp_hit-to>
|
|
|
4337 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4338 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4339 <Hsp_identity>9</Hsp_identity>
|
|
|
4340 <Hsp_positive>9</Hsp_positive>
|
|
|
4341 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4342 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4343 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
4344 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
4345 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4346 </Hsp>
|
|
|
4347 <Hsp>
|
|
|
4348 <Hsp_num>2</Hsp_num>
|
|
|
4349 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
4350 <Hsp_score>7</Hsp_score>
|
|
|
4351 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
4352 <Hsp_query-from>6</Hsp_query-from>
|
|
|
4353 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4354 <Hsp_hit-from>2605</Hsp_hit-from>
|
|
|
4355 <Hsp_hit-to>2611</Hsp_hit-to>
|
|
|
4356 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4357 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4358 <Hsp_identity>7</Hsp_identity>
|
|
|
4359 <Hsp_positive>7</Hsp_positive>
|
|
|
4360 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4361 <Hsp_align-len>7</Hsp_align-len>
|
|
|
4362 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
4363 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
4364 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
4365 </Hsp>
|
|
|
4366 </Hit_hsps>
|
|
|
4367 </Hit>
|
|
|
4368 <Hit>
|
|
|
4369 <Hit_num>61</Hit_num>
|
|
|
4370 <Hit_id>gi|188596372|pdb|3CCV|0</Hit_id>
|
|
|
4371 <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2616a >gi|188596403|pdb|3CD6|0 Chain 0, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With Cc-puromycin</Hit_def>
|
|
|
4372 <Hit_accession>3CCV_0</Hit_accession>
|
|
|
4373 <Hit_len>2923</Hit_len>
|
|
|
4374 <Hit_hsps>
|
|
|
4375 <Hsp>
|
|
|
4376 <Hsp_num>1</Hsp_num>
|
|
|
4377 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4378 <Hsp_score>9</Hsp_score>
|
|
|
4379 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4380 <Hsp_query-from>7</Hsp_query-from>
|
|
|
4381 <Hsp_query-to>15</Hsp_query-to>
|
|
|
4382 <Hsp_hit-from>305</Hsp_hit-from>
|
|
|
4383 <Hsp_hit-to>297</Hsp_hit-to>
|
|
|
4384 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4385 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
4386 <Hsp_identity>9</Hsp_identity>
|
|
|
4387 <Hsp_positive>9</Hsp_positive>
|
|
|
4388 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4389 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4390 <Hsp_qseq>TCGTGAAGA</Hsp_qseq>
|
|
|
4391 <Hsp_hseq>TCGTGAAGA</Hsp_hseq>
|
|
|
4392 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4393 </Hsp>
|
|
|
4394 <Hsp>
|
|
|
4395 <Hsp_num>2</Hsp_num>
|
|
|
4396 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4397 <Hsp_score>9</Hsp_score>
|
|
|
4398 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4399 <Hsp_query-from>4</Hsp_query-from>
|
|
|
4400 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4401 <Hsp_hit-from>2625</Hsp_hit-from>
|
|
|
4402 <Hsp_hit-to>2633</Hsp_hit-to>
|
|
|
4403 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4404 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4405 <Hsp_identity>9</Hsp_identity>
|
|
|
4406 <Hsp_positive>9</Hsp_positive>
|
|
|
4407 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4408 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4409 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
4410 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
4411 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4412 </Hsp>
|
|
|
4413 <Hsp>
|
|
|
4414 <Hsp_num>3</Hsp_num>
|
|
|
4415 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
4416 <Hsp_score>7</Hsp_score>
|
|
|
4417 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
4418 <Hsp_query-from>6</Hsp_query-from>
|
|
|
4419 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4420 <Hsp_hit-from>2606</Hsp_hit-from>
|
|
|
4421 <Hsp_hit-to>2612</Hsp_hit-to>
|
|
|
4422 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4423 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4424 <Hsp_identity>7</Hsp_identity>
|
|
|
4425 <Hsp_positive>7</Hsp_positive>
|
|
|
4426 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4427 <Hsp_align-len>7</Hsp_align-len>
|
|
|
4428 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
4429 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
4430 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
4431 </Hsp>
|
|
|
4432 </Hit_hsps>
|
|
|
4433 </Hit>
|
|
|
4434 <Hit>
|
|
|
4435 <Hit_num>62</Hit_num>
|
|
|
4436 <Hit_id>gi|188596341|pdb|3CCU|0</Hit_id>
|
|
|
4437 <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2482c</Hit_def>
|
|
|
4438 <Hit_accession>3CCU_0</Hit_accession>
|
|
|
4439 <Hit_len>2923</Hit_len>
|
|
|
4440 <Hit_hsps>
|
|
|
4441 <Hsp>
|
|
|
4442 <Hsp_num>1</Hsp_num>
|
|
|
4443 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4444 <Hsp_score>9</Hsp_score>
|
|
|
4445 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4446 <Hsp_query-from>7</Hsp_query-from>
|
|
|
4447 <Hsp_query-to>15</Hsp_query-to>
|
|
|
4448 <Hsp_hit-from>305</Hsp_hit-from>
|
|
|
4449 <Hsp_hit-to>297</Hsp_hit-to>
|
|
|
4450 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4451 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
4452 <Hsp_identity>9</Hsp_identity>
|
|
|
4453 <Hsp_positive>9</Hsp_positive>
|
|
|
4454 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4455 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4456 <Hsp_qseq>TCGTGAAGA</Hsp_qseq>
|
|
|
4457 <Hsp_hseq>TCGTGAAGA</Hsp_hseq>
|
|
|
4458 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4459 </Hsp>
|
|
|
4460 <Hsp>
|
|
|
4461 <Hsp_num>2</Hsp_num>
|
|
|
4462 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4463 <Hsp_score>9</Hsp_score>
|
|
|
4464 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4465 <Hsp_query-from>4</Hsp_query-from>
|
|
|
4466 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4467 <Hsp_hit-from>2625</Hsp_hit-from>
|
|
|
4468 <Hsp_hit-to>2633</Hsp_hit-to>
|
|
|
4469 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4470 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4471 <Hsp_identity>9</Hsp_identity>
|
|
|
4472 <Hsp_positive>9</Hsp_positive>
|
|
|
4473 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4474 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4475 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
4476 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
4477 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4478 </Hsp>
|
|
|
4479 <Hsp>
|
|
|
4480 <Hsp_num>3</Hsp_num>
|
|
|
4481 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
4482 <Hsp_score>7</Hsp_score>
|
|
|
4483 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
4484 <Hsp_query-from>6</Hsp_query-from>
|
|
|
4485 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4486 <Hsp_hit-from>2606</Hsp_hit-from>
|
|
|
4487 <Hsp_hit-to>2612</Hsp_hit-to>
|
|
|
4488 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4489 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4490 <Hsp_identity>7</Hsp_identity>
|
|
|
4491 <Hsp_positive>7</Hsp_positive>
|
|
|
4492 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4493 <Hsp_align-len>7</Hsp_align-len>
|
|
|
4494 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
4495 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
4496 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
4497 </Hsp>
|
|
|
4498 </Hit_hsps>
|
|
|
4499 </Hit>
|
|
|
4500 <Hit>
|
|
|
4501 <Hit_num>63</Hit_num>
|
|
|
4502 <Hit_id>gi|188596310|pdb|3CCS|0</Hit_id>
|
|
|
4503 <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2482a</Hit_def>
|
|
|
4504 <Hit_accession>3CCS_0</Hit_accession>
|
|
|
4505 <Hit_len>2923</Hit_len>
|
|
|
4506 <Hit_hsps>
|
|
|
4507 <Hsp>
|
|
|
4508 <Hsp_num>1</Hsp_num>
|
|
|
4509 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4510 <Hsp_score>9</Hsp_score>
|
|
|
4511 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4512 <Hsp_query-from>7</Hsp_query-from>
|
|
|
4513 <Hsp_query-to>15</Hsp_query-to>
|
|
|
4514 <Hsp_hit-from>305</Hsp_hit-from>
|
|
|
4515 <Hsp_hit-to>297</Hsp_hit-to>
|
|
|
4516 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4517 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
4518 <Hsp_identity>9</Hsp_identity>
|
|
|
4519 <Hsp_positive>9</Hsp_positive>
|
|
|
4520 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4521 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4522 <Hsp_qseq>TCGTGAAGA</Hsp_qseq>
|
|
|
4523 <Hsp_hseq>TCGTGAAGA</Hsp_hseq>
|
|
|
4524 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4525 </Hsp>
|
|
|
4526 <Hsp>
|
|
|
4527 <Hsp_num>2</Hsp_num>
|
|
|
4528 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4529 <Hsp_score>9</Hsp_score>
|
|
|
4530 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4531 <Hsp_query-from>4</Hsp_query-from>
|
|
|
4532 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4533 <Hsp_hit-from>2625</Hsp_hit-from>
|
|
|
4534 <Hsp_hit-to>2633</Hsp_hit-to>
|
|
|
4535 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4536 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4537 <Hsp_identity>9</Hsp_identity>
|
|
|
4538 <Hsp_positive>9</Hsp_positive>
|
|
|
4539 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4540 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4541 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
4542 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
4543 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4544 </Hsp>
|
|
|
4545 <Hsp>
|
|
|
4546 <Hsp_num>3</Hsp_num>
|
|
|
4547 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
4548 <Hsp_score>7</Hsp_score>
|
|
|
4549 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
4550 <Hsp_query-from>6</Hsp_query-from>
|
|
|
4551 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4552 <Hsp_hit-from>2606</Hsp_hit-from>
|
|
|
4553 <Hsp_hit-to>2612</Hsp_hit-to>
|
|
|
4554 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4555 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4556 <Hsp_identity>7</Hsp_identity>
|
|
|
4557 <Hsp_positive>7</Hsp_positive>
|
|
|
4558 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4559 <Hsp_align-len>7</Hsp_align-len>
|
|
|
4560 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
4561 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
4562 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
4563 </Hsp>
|
|
|
4564 </Hit_hsps>
|
|
|
4565 </Hit>
|
|
|
4566 <Hit>
|
|
|
4567 <Hit_num>64</Hit_num>
|
|
|
4568 <Hit_id>gi|188596279|pdb|3CCR|0</Hit_id>
|
|
|
4569 <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation A2488c. Density For Anisomycin Is Visible But Not Included In The Model.</Hit_def>
|
|
|
4570 <Hit_accession>3CCR_0</Hit_accession>
|
|
|
4571 <Hit_len>2923</Hit_len>
|
|
|
4572 <Hit_hsps>
|
|
|
4573 <Hsp>
|
|
|
4574 <Hsp_num>1</Hsp_num>
|
|
|
4575 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4576 <Hsp_score>9</Hsp_score>
|
|
|
4577 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4578 <Hsp_query-from>7</Hsp_query-from>
|
|
|
4579 <Hsp_query-to>15</Hsp_query-to>
|
|
|
4580 <Hsp_hit-from>305</Hsp_hit-from>
|
|
|
4581 <Hsp_hit-to>297</Hsp_hit-to>
|
|
|
4582 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4583 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
4584 <Hsp_identity>9</Hsp_identity>
|
|
|
4585 <Hsp_positive>9</Hsp_positive>
|
|
|
4586 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4587 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4588 <Hsp_qseq>TCGTGAAGA</Hsp_qseq>
|
|
|
4589 <Hsp_hseq>TCGTGAAGA</Hsp_hseq>
|
|
|
4590 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4591 </Hsp>
|
|
|
4592 <Hsp>
|
|
|
4593 <Hsp_num>2</Hsp_num>
|
|
|
4594 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4595 <Hsp_score>9</Hsp_score>
|
|
|
4596 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4597 <Hsp_query-from>4</Hsp_query-from>
|
|
|
4598 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4599 <Hsp_hit-from>2625</Hsp_hit-from>
|
|
|
4600 <Hsp_hit-to>2633</Hsp_hit-to>
|
|
|
4601 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4602 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4603 <Hsp_identity>9</Hsp_identity>
|
|
|
4604 <Hsp_positive>9</Hsp_positive>
|
|
|
4605 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4606 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4607 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
4608 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
4609 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4610 </Hsp>
|
|
|
4611 <Hsp>
|
|
|
4612 <Hsp_num>3</Hsp_num>
|
|
|
4613 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
4614 <Hsp_score>7</Hsp_score>
|
|
|
4615 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
4616 <Hsp_query-from>6</Hsp_query-from>
|
|
|
4617 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4618 <Hsp_hit-from>2606</Hsp_hit-from>
|
|
|
4619 <Hsp_hit-to>2612</Hsp_hit-to>
|
|
|
4620 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4621 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4622 <Hsp_identity>7</Hsp_identity>
|
|
|
4623 <Hsp_positive>7</Hsp_positive>
|
|
|
4624 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4625 <Hsp_align-len>7</Hsp_align-len>
|
|
|
4626 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
4627 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
4628 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
4629 </Hsp>
|
|
|
4630 </Hit_hsps>
|
|
|
4631 </Hit>
|
|
|
4632 <Hit>
|
|
|
4633 <Hit_num>65</Hit_num>
|
|
|
4634 <Hit_id>gi|188596248|pdb|3CCQ|0</Hit_id>
|
|
|
4635 <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation A2488u</Hit_def>
|
|
|
4636 <Hit_accession>3CCQ_0</Hit_accession>
|
|
|
4637 <Hit_len>2923</Hit_len>
|
|
|
4638 <Hit_hsps>
|
|
|
4639 <Hsp>
|
|
|
4640 <Hsp_num>1</Hsp_num>
|
|
|
4641 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4642 <Hsp_score>9</Hsp_score>
|
|
|
4643 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4644 <Hsp_query-from>7</Hsp_query-from>
|
|
|
4645 <Hsp_query-to>15</Hsp_query-to>
|
|
|
4646 <Hsp_hit-from>305</Hsp_hit-from>
|
|
|
4647 <Hsp_hit-to>297</Hsp_hit-to>
|
|
|
4648 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4649 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
4650 <Hsp_identity>9</Hsp_identity>
|
|
|
4651 <Hsp_positive>9</Hsp_positive>
|
|
|
4652 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4653 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4654 <Hsp_qseq>TCGTGAAGA</Hsp_qseq>
|
|
|
4655 <Hsp_hseq>TCGTGAAGA</Hsp_hseq>
|
|
|
4656 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4657 </Hsp>
|
|
|
4658 <Hsp>
|
|
|
4659 <Hsp_num>2</Hsp_num>
|
|
|
4660 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4661 <Hsp_score>9</Hsp_score>
|
|
|
4662 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4663 <Hsp_query-from>4</Hsp_query-from>
|
|
|
4664 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4665 <Hsp_hit-from>2625</Hsp_hit-from>
|
|
|
4666 <Hsp_hit-to>2633</Hsp_hit-to>
|
|
|
4667 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4668 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4669 <Hsp_identity>9</Hsp_identity>
|
|
|
4670 <Hsp_positive>9</Hsp_positive>
|
|
|
4671 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4672 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4673 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
4674 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
4675 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4676 </Hsp>
|
|
|
4677 <Hsp>
|
|
|
4678 <Hsp_num>3</Hsp_num>
|
|
|
4679 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
4680 <Hsp_score>7</Hsp_score>
|
|
|
4681 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
4682 <Hsp_query-from>6</Hsp_query-from>
|
|
|
4683 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4684 <Hsp_hit-from>2606</Hsp_hit-from>
|
|
|
4685 <Hsp_hit-to>2612</Hsp_hit-to>
|
|
|
4686 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4687 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4688 <Hsp_identity>7</Hsp_identity>
|
|
|
4689 <Hsp_positive>7</Hsp_positive>
|
|
|
4690 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4691 <Hsp_align-len>7</Hsp_align-len>
|
|
|
4692 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
4693 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
4694 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
4695 </Hsp>
|
|
|
4696 </Hit_hsps>
|
|
|
4697 </Hit>
|
|
|
4698 <Hit>
|
|
|
4699 <Hit_num>66</Hit_num>
|
|
|
4700 <Hit_id>gi|188596217|pdb|3CCM|0</Hit_id>
|
|
|
4701 <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2611u</Hit_def>
|
|
|
4702 <Hit_accession>3CCM_0</Hit_accession>
|
|
|
4703 <Hit_len>2923</Hit_len>
|
|
|
4704 <Hit_hsps>
|
|
|
4705 <Hsp>
|
|
|
4706 <Hsp_num>1</Hsp_num>
|
|
|
4707 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4708 <Hsp_score>9</Hsp_score>
|
|
|
4709 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4710 <Hsp_query-from>7</Hsp_query-from>
|
|
|
4711 <Hsp_query-to>15</Hsp_query-to>
|
|
|
4712 <Hsp_hit-from>305</Hsp_hit-from>
|
|
|
4713 <Hsp_hit-to>297</Hsp_hit-to>
|
|
|
4714 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4715 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
4716 <Hsp_identity>9</Hsp_identity>
|
|
|
4717 <Hsp_positive>9</Hsp_positive>
|
|
|
4718 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4719 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4720 <Hsp_qseq>TCGTGAAGA</Hsp_qseq>
|
|
|
4721 <Hsp_hseq>TCGTGAAGA</Hsp_hseq>
|
|
|
4722 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4723 </Hsp>
|
|
|
4724 <Hsp>
|
|
|
4725 <Hsp_num>2</Hsp_num>
|
|
|
4726 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4727 <Hsp_score>9</Hsp_score>
|
|
|
4728 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4729 <Hsp_query-from>4</Hsp_query-from>
|
|
|
4730 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4731 <Hsp_hit-from>2625</Hsp_hit-from>
|
|
|
4732 <Hsp_hit-to>2633</Hsp_hit-to>
|
|
|
4733 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4734 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4735 <Hsp_identity>9</Hsp_identity>
|
|
|
4736 <Hsp_positive>9</Hsp_positive>
|
|
|
4737 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4738 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4739 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
4740 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
4741 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4742 </Hsp>
|
|
|
4743 </Hit_hsps>
|
|
|
4744 </Hit>
|
|
|
4745 <Hit>
|
|
|
4746 <Hit_num>67</Hit_num>
|
|
|
4747 <Hit_id>gi|188596186|pdb|3CCL|0</Hit_id>
|
|
|
4748 <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation U2535c. Density For Anisomycin Is Visible But Not Included In Model.</Hit_def>
|
|
|
4749 <Hit_accession>3CCL_0</Hit_accession>
|
|
|
4750 <Hit_len>2923</Hit_len>
|
|
|
4751 <Hit_hsps>
|
|
|
4752 <Hsp>
|
|
|
4753 <Hsp_num>1</Hsp_num>
|
|
|
4754 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4755 <Hsp_score>9</Hsp_score>
|
|
|
4756 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4757 <Hsp_query-from>7</Hsp_query-from>
|
|
|
4758 <Hsp_query-to>15</Hsp_query-to>
|
|
|
4759 <Hsp_hit-from>305</Hsp_hit-from>
|
|
|
4760 <Hsp_hit-to>297</Hsp_hit-to>
|
|
|
4761 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4762 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
4763 <Hsp_identity>9</Hsp_identity>
|
|
|
4764 <Hsp_positive>9</Hsp_positive>
|
|
|
4765 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4766 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4767 <Hsp_qseq>TCGTGAAGA</Hsp_qseq>
|
|
|
4768 <Hsp_hseq>TCGTGAAGA</Hsp_hseq>
|
|
|
4769 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4770 </Hsp>
|
|
|
4771 <Hsp>
|
|
|
4772 <Hsp_num>2</Hsp_num>
|
|
|
4773 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4774 <Hsp_score>9</Hsp_score>
|
|
|
4775 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4776 <Hsp_query-from>4</Hsp_query-from>
|
|
|
4777 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4778 <Hsp_hit-from>2625</Hsp_hit-from>
|
|
|
4779 <Hsp_hit-to>2633</Hsp_hit-to>
|
|
|
4780 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4781 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4782 <Hsp_identity>9</Hsp_identity>
|
|
|
4783 <Hsp_positive>9</Hsp_positive>
|
|
|
4784 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4785 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4786 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
4787 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
4788 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4789 </Hsp>
|
|
|
4790 <Hsp>
|
|
|
4791 <Hsp_num>3</Hsp_num>
|
|
|
4792 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
4793 <Hsp_score>7</Hsp_score>
|
|
|
4794 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
4795 <Hsp_query-from>6</Hsp_query-from>
|
|
|
4796 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4797 <Hsp_hit-from>2606</Hsp_hit-from>
|
|
|
4798 <Hsp_hit-to>2612</Hsp_hit-to>
|
|
|
4799 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4800 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4801 <Hsp_identity>7</Hsp_identity>
|
|
|
4802 <Hsp_positive>7</Hsp_positive>
|
|
|
4803 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4804 <Hsp_align-len>7</Hsp_align-len>
|
|
|
4805 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
4806 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
4807 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
4808 </Hsp>
|
|
|
4809 </Hit_hsps>
|
|
|
4810 </Hit>
|
|
|
4811 <Hit>
|
|
|
4812 <Hit_num>68</Hit_num>
|
|
|
4813 <Hit_id>gi|188596155|pdb|3CCJ|0</Hit_id>
|
|
|
4814 <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation C2534u</Hit_def>
|
|
|
4815 <Hit_accession>3CCJ_0</Hit_accession>
|
|
|
4816 <Hit_len>2923</Hit_len>
|
|
|
4817 <Hit_hsps>
|
|
|
4818 <Hsp>
|
|
|
4819 <Hsp_num>1</Hsp_num>
|
|
|
4820 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4821 <Hsp_score>9</Hsp_score>
|
|
|
4822 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4823 <Hsp_query-from>7</Hsp_query-from>
|
|
|
4824 <Hsp_query-to>15</Hsp_query-to>
|
|
|
4825 <Hsp_hit-from>305</Hsp_hit-from>
|
|
|
4826 <Hsp_hit-to>297</Hsp_hit-to>
|
|
|
4827 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4828 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
4829 <Hsp_identity>9</Hsp_identity>
|
|
|
4830 <Hsp_positive>9</Hsp_positive>
|
|
|
4831 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4832 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4833 <Hsp_qseq>TCGTGAAGA</Hsp_qseq>
|
|
|
4834 <Hsp_hseq>TCGTGAAGA</Hsp_hseq>
|
|
|
4835 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4836 </Hsp>
|
|
|
4837 <Hsp>
|
|
|
4838 <Hsp_num>2</Hsp_num>
|
|
|
4839 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4840 <Hsp_score>9</Hsp_score>
|
|
|
4841 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4842 <Hsp_query-from>4</Hsp_query-from>
|
|
|
4843 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4844 <Hsp_hit-from>2625</Hsp_hit-from>
|
|
|
4845 <Hsp_hit-to>2633</Hsp_hit-to>
|
|
|
4846 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4847 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4848 <Hsp_identity>9</Hsp_identity>
|
|
|
4849 <Hsp_positive>9</Hsp_positive>
|
|
|
4850 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4851 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4852 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
4853 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
4854 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4855 </Hsp>
|
|
|
4856 <Hsp>
|
|
|
4857 <Hsp_num>3</Hsp_num>
|
|
|
4858 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
4859 <Hsp_score>7</Hsp_score>
|
|
|
4860 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
4861 <Hsp_query-from>6</Hsp_query-from>
|
|
|
4862 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4863 <Hsp_hit-from>2606</Hsp_hit-from>
|
|
|
4864 <Hsp_hit-to>2612</Hsp_hit-to>
|
|
|
4865 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4866 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4867 <Hsp_identity>7</Hsp_identity>
|
|
|
4868 <Hsp_positive>7</Hsp_positive>
|
|
|
4869 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4870 <Hsp_align-len>7</Hsp_align-len>
|
|
|
4871 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
4872 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
4873 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
4874 </Hsp>
|
|
|
4875 </Hit_hsps>
|
|
|
4876 </Hit>
|
|
|
4877 <Hit>
|
|
|
4878 <Hit_num>69</Hit_num>
|
|
|
4879 <Hit_id>gi|188596124|pdb|3CCE|0</Hit_id>
|
|
|
4880 <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation U2535a</Hit_def>
|
|
|
4881 <Hit_accession>3CCE_0</Hit_accession>
|
|
|
4882 <Hit_len>2923</Hit_len>
|
|
|
4883 <Hit_hsps>
|
|
|
4884 <Hsp>
|
|
|
4885 <Hsp_num>1</Hsp_num>
|
|
|
4886 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4887 <Hsp_score>9</Hsp_score>
|
|
|
4888 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4889 <Hsp_query-from>7</Hsp_query-from>
|
|
|
4890 <Hsp_query-to>15</Hsp_query-to>
|
|
|
4891 <Hsp_hit-from>305</Hsp_hit-from>
|
|
|
4892 <Hsp_hit-to>297</Hsp_hit-to>
|
|
|
4893 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4894 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
4895 <Hsp_identity>9</Hsp_identity>
|
|
|
4896 <Hsp_positive>9</Hsp_positive>
|
|
|
4897 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4898 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4899 <Hsp_qseq>TCGTGAAGA</Hsp_qseq>
|
|
|
4900 <Hsp_hseq>TCGTGAAGA</Hsp_hseq>
|
|
|
4901 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4902 </Hsp>
|
|
|
4903 <Hsp>
|
|
|
4904 <Hsp_num>2</Hsp_num>
|
|
|
4905 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4906 <Hsp_score>9</Hsp_score>
|
|
|
4907 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4908 <Hsp_query-from>4</Hsp_query-from>
|
|
|
4909 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4910 <Hsp_hit-from>2625</Hsp_hit-from>
|
|
|
4911 <Hsp_hit-to>2633</Hsp_hit-to>
|
|
|
4912 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4913 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4914 <Hsp_identity>9</Hsp_identity>
|
|
|
4915 <Hsp_positive>9</Hsp_positive>
|
|
|
4916 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4917 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4918 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
4919 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
4920 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4921 </Hsp>
|
|
|
4922 <Hsp>
|
|
|
4923 <Hsp_num>3</Hsp_num>
|
|
|
4924 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
4925 <Hsp_score>7</Hsp_score>
|
|
|
4926 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
4927 <Hsp_query-from>6</Hsp_query-from>
|
|
|
4928 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4929 <Hsp_hit-from>2606</Hsp_hit-from>
|
|
|
4930 <Hsp_hit-to>2612</Hsp_hit-to>
|
|
|
4931 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4932 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4933 <Hsp_identity>7</Hsp_identity>
|
|
|
4934 <Hsp_positive>7</Hsp_positive>
|
|
|
4935 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4936 <Hsp_align-len>7</Hsp_align-len>
|
|
|
4937 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
4938 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
4939 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
4940 </Hsp>
|
|
|
4941 </Hit_hsps>
|
|
|
4942 </Hit>
|
|
|
4943 <Hit>
|
|
|
4944 <Hit_num>70</Hit_num>
|
|
|
4945 <Hit_id>gi|188596093|pdb|3CC7|0</Hit_id>
|
|
|
4946 <Hit_def>Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation C2487u</Hit_def>
|
|
|
4947 <Hit_accession>3CC7_0</Hit_accession>
|
|
|
4948 <Hit_len>2923</Hit_len>
|
|
|
4949 <Hit_hsps>
|
|
|
4950 <Hsp>
|
|
|
4951 <Hsp_num>1</Hsp_num>
|
|
|
4952 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4953 <Hsp_score>9</Hsp_score>
|
|
|
4954 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4955 <Hsp_query-from>7</Hsp_query-from>
|
|
|
4956 <Hsp_query-to>15</Hsp_query-to>
|
|
|
4957 <Hsp_hit-from>305</Hsp_hit-from>
|
|
|
4958 <Hsp_hit-to>297</Hsp_hit-to>
|
|
|
4959 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4960 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
4961 <Hsp_identity>9</Hsp_identity>
|
|
|
4962 <Hsp_positive>9</Hsp_positive>
|
|
|
4963 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4964 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4965 <Hsp_qseq>TCGTGAAGA</Hsp_qseq>
|
|
|
4966 <Hsp_hseq>TCGTGAAGA</Hsp_hseq>
|
|
|
4967 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4968 </Hsp>
|
|
|
4969 <Hsp>
|
|
|
4970 <Hsp_num>2</Hsp_num>
|
|
|
4971 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
4972 <Hsp_score>9</Hsp_score>
|
|
|
4973 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
4974 <Hsp_query-from>4</Hsp_query-from>
|
|
|
4975 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4976 <Hsp_hit-from>2625</Hsp_hit-from>
|
|
|
4977 <Hsp_hit-to>2633</Hsp_hit-to>
|
|
|
4978 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4979 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4980 <Hsp_identity>9</Hsp_identity>
|
|
|
4981 <Hsp_positive>9</Hsp_positive>
|
|
|
4982 <Hsp_gaps>0</Hsp_gaps>
|
|
|
4983 <Hsp_align-len>9</Hsp_align-len>
|
|
|
4984 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
4985 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
4986 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
4987 </Hsp>
|
|
|
4988 <Hsp>
|
|
|
4989 <Hsp_num>3</Hsp_num>
|
|
|
4990 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
4991 <Hsp_score>7</Hsp_score>
|
|
|
4992 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
4993 <Hsp_query-from>6</Hsp_query-from>
|
|
|
4994 <Hsp_query-to>12</Hsp_query-to>
|
|
|
4995 <Hsp_hit-from>2606</Hsp_hit-from>
|
|
|
4996 <Hsp_hit-to>2612</Hsp_hit-to>
|
|
|
4997 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
4998 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
4999 <Hsp_identity>7</Hsp_identity>
|
|
|
5000 <Hsp_positive>7</Hsp_positive>
|
|
|
5001 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5002 <Hsp_align-len>7</Hsp_align-len>
|
|
|
5003 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
5004 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
5005 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
5006 </Hsp>
|
|
|
5007 </Hit_hsps>
|
|
|
5008 </Hit>
|
|
|
5009 <Hit>
|
|
|
5010 <Hit_num>71</Hit_num>
|
|
|
5011 <Hit_id>gi|188596031|pdb|3CC2|0</Hit_id>
|
|
|
5012 <Hit_def>Chain 0, The Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For The 23s Rrna And Genome-Derived Sequences For R-Proteins >gi|188596062|pdb|3CC4|0 Chain 0, Co-Crystal Structure Of Anisomycin Bound To The 50s Ribosomal Subunit >gi|206581937|pdb|3CMA|0 Chain 0, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|206581970|pdb|3CME|0 Chain 0, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|228312141|pdb|3G4S|0 Chain 0, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit >gi|228312197|pdb|3G6E|0 Chain 0, Co-Crystal Structure Of Homoharringtonine Bound To The Large Ribosomal Subunit >gi|228312233|pdb|3G71|0 Chain 0, Co-crystal Structure Of Bruceantin Bound To The Large Ribosomal Subunit >gi|290790035|pdb|3I55|0 Chain 0, Co-Crystal Structure Of Mycalamide A Bound To The Large Ribosomal Subunit</Hit_def>
|
|
|
5013 <Hit_accession>3CC2_0</Hit_accession>
|
|
|
5014 <Hit_len>2923</Hit_len>
|
|
|
5015 <Hit_hsps>
|
|
|
5016 <Hsp>
|
|
|
5017 <Hsp_num>1</Hsp_num>
|
|
|
5018 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
5019 <Hsp_score>9</Hsp_score>
|
|
|
5020 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
5021 <Hsp_query-from>7</Hsp_query-from>
|
|
|
5022 <Hsp_query-to>15</Hsp_query-to>
|
|
|
5023 <Hsp_hit-from>305</Hsp_hit-from>
|
|
|
5024 <Hsp_hit-to>297</Hsp_hit-to>
|
|
|
5025 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5026 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
5027 <Hsp_identity>9</Hsp_identity>
|
|
|
5028 <Hsp_positive>9</Hsp_positive>
|
|
|
5029 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5030 <Hsp_align-len>9</Hsp_align-len>
|
|
|
5031 <Hsp_qseq>TCGTGAAGA</Hsp_qseq>
|
|
|
5032 <Hsp_hseq>TCGTGAAGA</Hsp_hseq>
|
|
|
5033 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
5034 </Hsp>
|
|
|
5035 <Hsp>
|
|
|
5036 <Hsp_num>2</Hsp_num>
|
|
|
5037 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
5038 <Hsp_score>9</Hsp_score>
|
|
|
5039 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
5040 <Hsp_query-from>4</Hsp_query-from>
|
|
|
5041 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5042 <Hsp_hit-from>2625</Hsp_hit-from>
|
|
|
5043 <Hsp_hit-to>2633</Hsp_hit-to>
|
|
|
5044 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5045 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5046 <Hsp_identity>9</Hsp_identity>
|
|
|
5047 <Hsp_positive>9</Hsp_positive>
|
|
|
5048 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5049 <Hsp_align-len>9</Hsp_align-len>
|
|
|
5050 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
5051 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
5052 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
5053 </Hsp>
|
|
|
5054 <Hsp>
|
|
|
5055 <Hsp_num>3</Hsp_num>
|
|
|
5056 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
5057 <Hsp_score>7</Hsp_score>
|
|
|
5058 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
5059 <Hsp_query-from>6</Hsp_query-from>
|
|
|
5060 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5061 <Hsp_hit-from>2606</Hsp_hit-from>
|
|
|
5062 <Hsp_hit-to>2612</Hsp_hit-to>
|
|
|
5063 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5064 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5065 <Hsp_identity>7</Hsp_identity>
|
|
|
5066 <Hsp_positive>7</Hsp_positive>
|
|
|
5067 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5068 <Hsp_align-len>7</Hsp_align-len>
|
|
|
5069 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
5070 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
5071 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
5072 </Hsp>
|
|
|
5073 </Hit_hsps>
|
|
|
5074 </Hit>
|
|
|
5075 <Hit>
|
|
|
5076 <Hit_num>72</Hit_num>
|
|
|
5077 <Hit_id>gi|187609272|pdb|2ZKR|0</Hit_id>
|
|
|
5078 <Hit_def>Chain 0, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map</Hit_def>
|
|
|
5079 <Hit_accession>2ZKR_0</Hit_accession>
|
|
|
5080 <Hit_len>2903</Hit_len>
|
|
|
5081 <Hit_hsps>
|
|
|
5082 <Hsp>
|
|
|
5083 <Hsp_num>1</Hsp_num>
|
|
|
5084 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
5085 <Hsp_score>9</Hsp_score>
|
|
|
5086 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
5087 <Hsp_query-from>4</Hsp_query-from>
|
|
|
5088 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5089 <Hsp_hit-from>2623</Hsp_hit-from>
|
|
|
5090 <Hsp_hit-to>2631</Hsp_hit-to>
|
|
|
5091 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5092 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5093 <Hsp_identity>9</Hsp_identity>
|
|
|
5094 <Hsp_positive>9</Hsp_positive>
|
|
|
5095 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5096 <Hsp_align-len>9</Hsp_align-len>
|
|
|
5097 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
5098 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
5099 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
5100 </Hsp>
|
|
|
5101 <Hsp>
|
|
|
5102 <Hsp_num>2</Hsp_num>
|
|
|
5103 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
5104 <Hsp_score>8</Hsp_score>
|
|
|
5105 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
5106 <Hsp_query-from>9</Hsp_query-from>
|
|
|
5107 <Hsp_query-to>16</Hsp_query-to>
|
|
|
5108 <Hsp_hit-from>2111</Hsp_hit-from>
|
|
|
5109 <Hsp_hit-to>2118</Hsp_hit-to>
|
|
|
5110 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5111 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5112 <Hsp_identity>8</Hsp_identity>
|
|
|
5113 <Hsp_positive>8</Hsp_positive>
|
|
|
5114 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5115 <Hsp_align-len>8</Hsp_align-len>
|
|
|
5116 <Hsp_qseq>GTGAAGAG</Hsp_qseq>
|
|
|
5117 <Hsp_hseq>GTGAAGAG</Hsp_hseq>
|
|
|
5118 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
5119 </Hsp>
|
|
|
5120 <Hsp>
|
|
|
5121 <Hsp_num>3</Hsp_num>
|
|
|
5122 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
5123 <Hsp_score>7</Hsp_score>
|
|
|
5124 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
5125 <Hsp_query-from>10</Hsp_query-from>
|
|
|
5126 <Hsp_query-to>16</Hsp_query-to>
|
|
|
5127 <Hsp_hit-from>353</Hsp_hit-from>
|
|
|
5128 <Hsp_hit-to>359</Hsp_hit-to>
|
|
|
5129 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5130 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5131 <Hsp_identity>7</Hsp_identity>
|
|
|
5132 <Hsp_positive>7</Hsp_positive>
|
|
|
5133 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5134 <Hsp_align-len>7</Hsp_align-len>
|
|
|
5135 <Hsp_qseq>TGAAGAG</Hsp_qseq>
|
|
|
5136 <Hsp_hseq>TGAAGAG</Hsp_hseq>
|
|
|
5137 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
5138 </Hsp>
|
|
|
5139 <Hsp>
|
|
|
5140 <Hsp_num>4</Hsp_num>
|
|
|
5141 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
5142 <Hsp_score>7</Hsp_score>
|
|
|
5143 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
5144 <Hsp_query-from>9</Hsp_query-from>
|
|
|
5145 <Hsp_query-to>15</Hsp_query-to>
|
|
|
5146 <Hsp_hit-from>1892</Hsp_hit-from>
|
|
|
5147 <Hsp_hit-to>1898</Hsp_hit-to>
|
|
|
5148 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5149 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5150 <Hsp_identity>7</Hsp_identity>
|
|
|
5151 <Hsp_positive>7</Hsp_positive>
|
|
|
5152 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5153 <Hsp_align-len>7</Hsp_align-len>
|
|
|
5154 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
5155 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
5156 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
5157 </Hsp>
|
|
|
5158 </Hit_hsps>
|
|
|
5159 </Hit>
|
|
|
5160 <Hit>
|
|
|
5161 <Hit_num>73</Hit_num>
|
|
|
5162 <Hit_id>gi|171848835|pdb|2QA4|0</Hit_id>
|
|
|
5163 <Hit_def>Chain 0, A More Complete Structure Of The The L7L12 STALK OF THE Haloarcula Marismortui 50s Large Ribosomal Subunit</Hit_def>
|
|
|
5164 <Hit_accession>2QA4_0</Hit_accession>
|
|
|
5165 <Hit_len>2922</Hit_len>
|
|
|
5166 <Hit_hsps>
|
|
|
5167 <Hsp>
|
|
|
5168 <Hsp_num>1</Hsp_num>
|
|
|
5169 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
5170 <Hsp_score>9</Hsp_score>
|
|
|
5171 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
5172 <Hsp_query-from>4</Hsp_query-from>
|
|
|
5173 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5174 <Hsp_hit-from>2624</Hsp_hit-from>
|
|
|
5175 <Hsp_hit-to>2632</Hsp_hit-to>
|
|
|
5176 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5177 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5178 <Hsp_identity>9</Hsp_identity>
|
|
|
5179 <Hsp_positive>9</Hsp_positive>
|
|
|
5180 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5181 <Hsp_align-len>9</Hsp_align-len>
|
|
|
5182 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
5183 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
5184 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
5185 </Hsp>
|
|
|
5186 <Hsp>
|
|
|
5187 <Hsp_num>2</Hsp_num>
|
|
|
5188 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
5189 <Hsp_score>7</Hsp_score>
|
|
|
5190 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
5191 <Hsp_query-from>6</Hsp_query-from>
|
|
|
5192 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5193 <Hsp_hit-from>2605</Hsp_hit-from>
|
|
|
5194 <Hsp_hit-to>2611</Hsp_hit-to>
|
|
|
5195 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5196 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5197 <Hsp_identity>7</Hsp_identity>
|
|
|
5198 <Hsp_positive>7</Hsp_positive>
|
|
|
5199 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5200 <Hsp_align-len>7</Hsp_align-len>
|
|
|
5201 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
5202 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
5203 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
5204 </Hsp>
|
|
|
5205 </Hit_hsps>
|
|
|
5206 </Hit>
|
|
|
5207 <Hit>
|
|
|
5208 <Hit_num>74</Hit_num>
|
|
|
5209 <Hit_id>gi|99032306|pdb|2FTC|R</Hit_id>
|
|
|
5210 <Hit_def>Chain R, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome</Hit_def>
|
|
|
5211 <Hit_accession>2FTC_R</Hit_accession>
|
|
|
5212 <Hit_len>1568</Hit_len>
|
|
|
5213 <Hit_hsps>
|
|
|
5214 <Hsp>
|
|
|
5215 <Hsp_num>1</Hsp_num>
|
|
|
5216 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
5217 <Hsp_score>9</Hsp_score>
|
|
|
5218 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
5219 <Hsp_query-from>8</Hsp_query-from>
|
|
|
5220 <Hsp_query-to>16</Hsp_query-to>
|
|
|
5221 <Hsp_hit-from>1032</Hsp_hit-from>
|
|
|
5222 <Hsp_hit-to>1040</Hsp_hit-to>
|
|
|
5223 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5224 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5225 <Hsp_identity>9</Hsp_identity>
|
|
|
5226 <Hsp_positive>9</Hsp_positive>
|
|
|
5227 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5228 <Hsp_align-len>9</Hsp_align-len>
|
|
|
5229 <Hsp_qseq>CGTGAAGAG</Hsp_qseq>
|
|
|
5230 <Hsp_hseq>CGTGAAGAG</Hsp_hseq>
|
|
|
5231 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
5232 </Hsp>
|
|
|
5233 </Hit_hsps>
|
|
|
5234 </Hit>
|
|
|
5235 <Hit>
|
|
|
5236 <Hit_num>75</Hit_num>
|
|
|
5237 <Hit_id>gi|50513468|pdb|1S72|0</Hit_id>
|
|
|
5238 <Hit_def>Chain 0, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution >gi|83753123|pdb|1VQ4|0 Chain 0, The Structure Of The Transition State Analogue "daa" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753155|pdb|1VQ5|0 Chain 0, The Structure Of The Transition State Analogue "raa" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753187|pdb|1VQ6|0 Chain 0, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753219|pdb|1VQ7|0 Chain 0, The Structure Of The Transition State Analogue "dca" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753251|pdb|1VQ8|0 Chain 0, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic Sparsomycin Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753282|pdb|1VQ9|0 Chain 0, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic Sparsomycin Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753314|pdb|1VQK|0 Chain 0, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of The Ribosomal Subunit Of Haloarcula Marismortui >gi|83753345|pdb|1VQL|0 Chain 0, The Structure Of The Transition State Analogue "dcsn" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753376|pdb|1VQM|0 Chain 0, The Structure Of The Transition State Analogue "dan" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753407|pdb|1VQN|0 Chain 0, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|83753439|pdb|1VQO|0 Chain 0, The Structure Of Ccpmn Bound To The Large Ribosomal Subunit Haloarcula Marismortui >gi|83753470|pdb|1VQP|0 Chain 0, The Structure Of The Transition State Analogue "rap" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|145580171|pdb|2OTJ|0 Chain 0, 13-Deoxytedanolide Bound To The Large Subunit Of Haloarcula Marismortui >gi|145580202|pdb|2OTL|0 Chain 0, Girodazole Bound To The Large Subunit Of Haloarcula Marismortui</Hit_def>
|
|
|
5239 <Hit_accession>1S72_0</Hit_accession>
|
|
|
5240 <Hit_len>2922</Hit_len>
|
|
|
5241 <Hit_hsps>
|
|
|
5242 <Hsp>
|
|
|
5243 <Hsp_num>1</Hsp_num>
|
|
|
5244 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
5245 <Hsp_score>9</Hsp_score>
|
|
|
5246 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
5247 <Hsp_query-from>4</Hsp_query-from>
|
|
|
5248 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5249 <Hsp_hit-from>2624</Hsp_hit-from>
|
|
|
5250 <Hsp_hit-to>2632</Hsp_hit-to>
|
|
|
5251 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5252 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5253 <Hsp_identity>9</Hsp_identity>
|
|
|
5254 <Hsp_positive>9</Hsp_positive>
|
|
|
5255 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5256 <Hsp_align-len>9</Hsp_align-len>
|
|
|
5257 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
5258 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
5259 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
5260 </Hsp>
|
|
|
5261 <Hsp>
|
|
|
5262 <Hsp_num>2</Hsp_num>
|
|
|
5263 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
5264 <Hsp_score>7</Hsp_score>
|
|
|
5265 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
5266 <Hsp_query-from>6</Hsp_query-from>
|
|
|
5267 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5268 <Hsp_hit-from>2605</Hsp_hit-from>
|
|
|
5269 <Hsp_hit-to>2611</Hsp_hit-to>
|
|
|
5270 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5271 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5272 <Hsp_identity>7</Hsp_identity>
|
|
|
5273 <Hsp_positive>7</Hsp_positive>
|
|
|
5274 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5275 <Hsp_align-len>7</Hsp_align-len>
|
|
|
5276 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
5277 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
5278 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
5279 </Hsp>
|
|
|
5280 </Hit_hsps>
|
|
|
5281 </Hit>
|
|
|
5282 <Hit>
|
|
|
5283 <Hit_num>76</Hit_num>
|
|
|
5284 <Hit_id>gi|66360881|pdb|1YIT|0</Hit_id>
|
|
|
5285 <Hit_def>Chain 0, Crystal Structure Of Virginiamycin M And S Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|66360914|pdb|1YJ9|0 Chain 0, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Containing A Three Residue Deletion In L22</Hit_def>
|
|
|
5286 <Hit_accession>1YIT_0</Hit_accession>
|
|
|
5287 <Hit_len>2922</Hit_len>
|
|
|
5288 <Hit_hsps>
|
|
|
5289 <Hsp>
|
|
|
5290 <Hsp_num>1</Hsp_num>
|
|
|
5291 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
5292 <Hsp_score>9</Hsp_score>
|
|
|
5293 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
5294 <Hsp_query-from>7</Hsp_query-from>
|
|
|
5295 <Hsp_query-to>15</Hsp_query-to>
|
|
|
5296 <Hsp_hit-from>305</Hsp_hit-from>
|
|
|
5297 <Hsp_hit-to>297</Hsp_hit-to>
|
|
|
5298 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5299 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
5300 <Hsp_identity>9</Hsp_identity>
|
|
|
5301 <Hsp_positive>9</Hsp_positive>
|
|
|
5302 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5303 <Hsp_align-len>9</Hsp_align-len>
|
|
|
5304 <Hsp_qseq>TCGTGAAGA</Hsp_qseq>
|
|
|
5305 <Hsp_hseq>TCGTGAAGA</Hsp_hseq>
|
|
|
5306 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
5307 </Hsp>
|
|
|
5308 <Hsp>
|
|
|
5309 <Hsp_num>2</Hsp_num>
|
|
|
5310 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
5311 <Hsp_score>9</Hsp_score>
|
|
|
5312 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
5313 <Hsp_query-from>4</Hsp_query-from>
|
|
|
5314 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5315 <Hsp_hit-from>2625</Hsp_hit-from>
|
|
|
5316 <Hsp_hit-to>2633</Hsp_hit-to>
|
|
|
5317 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5318 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5319 <Hsp_identity>9</Hsp_identity>
|
|
|
5320 <Hsp_positive>9</Hsp_positive>
|
|
|
5321 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5322 <Hsp_align-len>9</Hsp_align-len>
|
|
|
5323 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
5324 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
5325 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
5326 </Hsp>
|
|
|
5327 <Hsp>
|
|
|
5328 <Hsp_num>3</Hsp_num>
|
|
|
5329 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
5330 <Hsp_score>7</Hsp_score>
|
|
|
5331 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
5332 <Hsp_query-from>6</Hsp_query-from>
|
|
|
5333 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5334 <Hsp_hit-from>2606</Hsp_hit-from>
|
|
|
5335 <Hsp_hit-to>2612</Hsp_hit-to>
|
|
|
5336 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5337 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5338 <Hsp_identity>7</Hsp_identity>
|
|
|
5339 <Hsp_positive>7</Hsp_positive>
|
|
|
5340 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5341 <Hsp_align-len>7</Hsp_align-len>
|
|
|
5342 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
5343 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
5344 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
5345 </Hsp>
|
|
|
5346 </Hit_hsps>
|
|
|
5347 </Hit>
|
|
|
5348 <Hit>
|
|
|
5349 <Hit_num>77</Hit_num>
|
|
|
5350 <Hit_id>gi|66360782|pdb|1YHQ|0</Hit_id>
|
|
|
5351 <Hit_def>Chain 0, Crystal Structure Of Azithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|66360815|pdb|1YI2|0 Chain 0, Crystal Structure Of Erythromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|66360848|pdb|1YIJ|0 Chain 0, Crystal Structure Of Telithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|66360947|pdb|1YJN|0 Chain 0, Crystal Structure Of Clindamycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui</Hit_def>
|
|
|
5352 <Hit_accession>1YHQ_0</Hit_accession>
|
|
|
5353 <Hit_len>2922</Hit_len>
|
|
|
5354 <Hit_hsps>
|
|
|
5355 <Hsp>
|
|
|
5356 <Hsp_num>1</Hsp_num>
|
|
|
5357 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
5358 <Hsp_score>9</Hsp_score>
|
|
|
5359 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
5360 <Hsp_query-from>7</Hsp_query-from>
|
|
|
5361 <Hsp_query-to>15</Hsp_query-to>
|
|
|
5362 <Hsp_hit-from>305</Hsp_hit-from>
|
|
|
5363 <Hsp_hit-to>297</Hsp_hit-to>
|
|
|
5364 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5365 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
5366 <Hsp_identity>9</Hsp_identity>
|
|
|
5367 <Hsp_positive>9</Hsp_positive>
|
|
|
5368 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5369 <Hsp_align-len>9</Hsp_align-len>
|
|
|
5370 <Hsp_qseq>TCGTGAAGA</Hsp_qseq>
|
|
|
5371 <Hsp_hseq>TCGTGAAGA</Hsp_hseq>
|
|
|
5372 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
5373 </Hsp>
|
|
|
5374 <Hsp>
|
|
|
5375 <Hsp_num>2</Hsp_num>
|
|
|
5376 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
5377 <Hsp_score>9</Hsp_score>
|
|
|
5378 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
5379 <Hsp_query-from>4</Hsp_query-from>
|
|
|
5380 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5381 <Hsp_hit-from>2625</Hsp_hit-from>
|
|
|
5382 <Hsp_hit-to>2633</Hsp_hit-to>
|
|
|
5383 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5384 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5385 <Hsp_identity>9</Hsp_identity>
|
|
|
5386 <Hsp_positive>9</Hsp_positive>
|
|
|
5387 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5388 <Hsp_align-len>9</Hsp_align-len>
|
|
|
5389 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
5390 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
5391 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
5392 </Hsp>
|
|
|
5393 <Hsp>
|
|
|
5394 <Hsp_num>3</Hsp_num>
|
|
|
5395 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
5396 <Hsp_score>7</Hsp_score>
|
|
|
5397 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
5398 <Hsp_query-from>6</Hsp_query-from>
|
|
|
5399 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5400 <Hsp_hit-from>2606</Hsp_hit-from>
|
|
|
5401 <Hsp_hit-to>2612</Hsp_hit-to>
|
|
|
5402 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5403 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5404 <Hsp_identity>7</Hsp_identity>
|
|
|
5405 <Hsp_positive>7</Hsp_positive>
|
|
|
5406 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5407 <Hsp_align-len>7</Hsp_align-len>
|
|
|
5408 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
5409 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
5410 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
5411 </Hsp>
|
|
|
5412 </Hit_hsps>
|
|
|
5413 </Hit>
|
|
|
5414 <Hit>
|
|
|
5415 <Hit_num>78</Hit_num>
|
|
|
5416 <Hit_id>gi|66360980|pdb|1YJW|0</Hit_id>
|
|
|
5417 <Hit_def>Chain 0, Crystal Structure Of Quinupristin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui</Hit_def>
|
|
|
5418 <Hit_accession>1YJW_0</Hit_accession>
|
|
|
5419 <Hit_len>2922</Hit_len>
|
|
|
5420 <Hit_hsps>
|
|
|
5421 <Hsp>
|
|
|
5422 <Hsp_num>1</Hsp_num>
|
|
|
5423 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
5424 <Hsp_score>9</Hsp_score>
|
|
|
5425 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
5426 <Hsp_query-from>7</Hsp_query-from>
|
|
|
5427 <Hsp_query-to>15</Hsp_query-to>
|
|
|
5428 <Hsp_hit-from>305</Hsp_hit-from>
|
|
|
5429 <Hsp_hit-to>297</Hsp_hit-to>
|
|
|
5430 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5431 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
5432 <Hsp_identity>9</Hsp_identity>
|
|
|
5433 <Hsp_positive>9</Hsp_positive>
|
|
|
5434 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5435 <Hsp_align-len>9</Hsp_align-len>
|
|
|
5436 <Hsp_qseq>TCGTGAAGA</Hsp_qseq>
|
|
|
5437 <Hsp_hseq>TCGTGAAGA</Hsp_hseq>
|
|
|
5438 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
5439 </Hsp>
|
|
|
5440 <Hsp>
|
|
|
5441 <Hsp_num>2</Hsp_num>
|
|
|
5442 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
5443 <Hsp_score>9</Hsp_score>
|
|
|
5444 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
5445 <Hsp_query-from>4</Hsp_query-from>
|
|
|
5446 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5447 <Hsp_hit-from>2625</Hsp_hit-from>
|
|
|
5448 <Hsp_hit-to>2633</Hsp_hit-to>
|
|
|
5449 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5450 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5451 <Hsp_identity>9</Hsp_identity>
|
|
|
5452 <Hsp_positive>9</Hsp_positive>
|
|
|
5453 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5454 <Hsp_align-len>9</Hsp_align-len>
|
|
|
5455 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
5456 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
5457 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
5458 </Hsp>
|
|
|
5459 <Hsp>
|
|
|
5460 <Hsp_num>3</Hsp_num>
|
|
|
5461 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
5462 <Hsp_score>7</Hsp_score>
|
|
|
5463 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
5464 <Hsp_query-from>6</Hsp_query-from>
|
|
|
5465 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5466 <Hsp_hit-from>2606</Hsp_hit-from>
|
|
|
5467 <Hsp_hit-to>2612</Hsp_hit-to>
|
|
|
5468 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5469 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5470 <Hsp_identity>7</Hsp_identity>
|
|
|
5471 <Hsp_positive>7</Hsp_positive>
|
|
|
5472 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5473 <Hsp_align-len>7</Hsp_align-len>
|
|
|
5474 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
5475 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
5476 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
5477 </Hsp>
|
|
|
5478 </Hit_hsps>
|
|
|
5479 </Hit>
|
|
|
5480 <Hit>
|
|
|
5481 <Hit_num>79</Hit_num>
|
|
|
5482 <Hit_id>gi|37928006|pdb|1Q86|A</Hit_id>
|
|
|
5483 <Hit_def>Chain A, Crystal Structure Of Cca-Phe-Cap-Biotin Bound Simultaneously At Half Occupancy To Both The A-Site And P- Site Of The The 50s Ribosomal Subunit.</Hit_def>
|
|
|
5484 <Hit_accession>1Q86_A</Hit_accession>
|
|
|
5485 <Hit_len>2922</Hit_len>
|
|
|
5486 <Hit_hsps>
|
|
|
5487 <Hsp>
|
|
|
5488 <Hsp_num>1</Hsp_num>
|
|
|
5489 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
5490 <Hsp_score>9</Hsp_score>
|
|
|
5491 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
5492 <Hsp_query-from>4</Hsp_query-from>
|
|
|
5493 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5494 <Hsp_hit-from>2624</Hsp_hit-from>
|
|
|
5495 <Hsp_hit-to>2632</Hsp_hit-to>
|
|
|
5496 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5497 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5498 <Hsp_identity>9</Hsp_identity>
|
|
|
5499 <Hsp_positive>9</Hsp_positive>
|
|
|
5500 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5501 <Hsp_align-len>9</Hsp_align-len>
|
|
|
5502 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
5503 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
5504 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
5505 </Hsp>
|
|
|
5506 <Hsp>
|
|
|
5507 <Hsp_num>2</Hsp_num>
|
|
|
5508 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
5509 <Hsp_score>7</Hsp_score>
|
|
|
5510 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
5511 <Hsp_query-from>6</Hsp_query-from>
|
|
|
5512 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5513 <Hsp_hit-from>2605</Hsp_hit-from>
|
|
|
5514 <Hsp_hit-to>2611</Hsp_hit-to>
|
|
|
5515 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5516 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5517 <Hsp_identity>7</Hsp_identity>
|
|
|
5518 <Hsp_positive>7</Hsp_positive>
|
|
|
5519 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5520 <Hsp_align-len>7</Hsp_align-len>
|
|
|
5521 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
5522 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
5523 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
5524 </Hsp>
|
|
|
5525 </Hit_hsps>
|
|
|
5526 </Hit>
|
|
|
5527 <Hit>
|
|
|
5528 <Hit_num>80</Hit_num>
|
|
|
5529 <Hit_id>gi|15825941|pdb|1JJ2|0</Hit_id>
|
|
|
5530 <Hit_def>Chain 0, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution >gi|20150986|pdb|1KQS|0 Chain 0, The Haloarcula Marismortui 50s Complexed With A Pretranslocational Intermediate In Protein Synthesis >gi|22219324|pdb|1M1K|A Chain A, Co-Crystal Structure Of Azithromycin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|24159019|pdb|1M90|A Chain A, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And Sparsomycin Bound To The 50s Ribosomal Subunit >gi|34811116|pdb|1K73|A Chain A, Co-Crystal Structure Of Anisomycin Bound To The 50s Ribosomal Subunit >gi|34811185|pdb|1N8R|A Chain A, Structure Of Large Ribosomal Subunit In Complex With Virginiamycin M >gi|34811215|pdb|1NJI|A Chain A, Structure Of Chloramphenicol Bound To The 50s Ribosomal Subunit >gi|37927899|pdb|1Q7Y|A Chain A, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl Transferase Center Of The 50s Ribosomal Subunit >gi|37927934|pdb|1Q81|A Chain A, Crystal Structure Of Minihelix With 3' Puromycin Bound To A- Site Of The 50s Ribosomal Subunit. >gi|37927970|pdb|1Q82|A Chain A, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of The 50s Ribosomal Subunit >gi|39654670|pdb|1QVF|0 Chain 0, Structure Of A Deacylated Trna Minihelix Bound To The E Site Of The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|39654701|pdb|1QVG|0 Chain 0, Structure Of Cca Oligonucleotide Bound To The Trna Binding Sites Of The Large Ribosomal Subunit Of Haloarcula Marismortui >gi|157878615|pdb|1K8A|A Chain A, Co-Crystal Structure Of Carbomycin A Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|157878625|pdb|1K9M|A Chain A, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|157878639|pdb|1KD1|A Chain A, Co-crystal Structure Of Spiramycin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui >gi|157880605|pdb|1W2B|0 Chain 0, Trigger Factor Ribosome Binding Domain In Complex With 50s >gi|228311909|pdb|3CXC|0 Chain 0, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound To The 50s Ribosomal Subunit Of H. Marismortui</Hit_def>
|
|
|
5531 <Hit_accession>1JJ2_0</Hit_accession>
|
|
|
5532 <Hit_len>2922</Hit_len>
|
|
|
5533 <Hit_hsps>
|
|
|
5534 <Hsp>
|
|
|
5535 <Hsp_num>1</Hsp_num>
|
|
|
5536 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
5537 <Hsp_score>9</Hsp_score>
|
|
|
5538 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
5539 <Hsp_query-from>4</Hsp_query-from>
|
|
|
5540 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5541 <Hsp_hit-from>2624</Hsp_hit-from>
|
|
|
5542 <Hsp_hit-to>2632</Hsp_hit-to>
|
|
|
5543 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5544 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5545 <Hsp_identity>9</Hsp_identity>
|
|
|
5546 <Hsp_positive>9</Hsp_positive>
|
|
|
5547 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5548 <Hsp_align-len>9</Hsp_align-len>
|
|
|
5549 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
5550 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
5551 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
5552 </Hsp>
|
|
|
5553 <Hsp>
|
|
|
5554 <Hsp_num>2</Hsp_num>
|
|
|
5555 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
5556 <Hsp_score>7</Hsp_score>
|
|
|
5557 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
5558 <Hsp_query-from>6</Hsp_query-from>
|
|
|
5559 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5560 <Hsp_hit-from>2605</Hsp_hit-from>
|
|
|
5561 <Hsp_hit-to>2611</Hsp_hit-to>
|
|
|
5562 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5563 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5564 <Hsp_identity>7</Hsp_identity>
|
|
|
5565 <Hsp_positive>7</Hsp_positive>
|
|
|
5566 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5567 <Hsp_align-len>7</Hsp_align-len>
|
|
|
5568 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
5569 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
5570 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
5571 </Hsp>
|
|
|
5572 </Hit_hsps>
|
|
|
5573 </Hit>
|
|
|
5574 <Hit>
|
|
|
5575 <Hit_num>81</Hit_num>
|
|
|
5576 <Hit_id>gi|34811146|pdb|1KC8|A</Hit_id>
|
|
|
5577 <Hit_def>Chain A, Co-Crystal Structure Of Blasticidin S Bound To The 50s Ribosomal Subunit</Hit_def>
|
|
|
5578 <Hit_accession>1KC8_A</Hit_accession>
|
|
|
5579 <Hit_len>2922</Hit_len>
|
|
|
5580 <Hit_hsps>
|
|
|
5581 <Hsp>
|
|
|
5582 <Hsp_num>1</Hsp_num>
|
|
|
5583 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
5584 <Hsp_score>9</Hsp_score>
|
|
|
5585 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
5586 <Hsp_query-from>4</Hsp_query-from>
|
|
|
5587 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5588 <Hsp_hit-from>2624</Hsp_hit-from>
|
|
|
5589 <Hsp_hit-to>2632</Hsp_hit-to>
|
|
|
5590 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5591 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5592 <Hsp_identity>9</Hsp_identity>
|
|
|
5593 <Hsp_positive>9</Hsp_positive>
|
|
|
5594 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5595 <Hsp_align-len>9</Hsp_align-len>
|
|
|
5596 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
5597 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
5598 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
5599 </Hsp>
|
|
|
5600 <Hsp>
|
|
|
5601 <Hsp_num>2</Hsp_num>
|
|
|
5602 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
5603 <Hsp_score>7</Hsp_score>
|
|
|
5604 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
5605 <Hsp_query-from>6</Hsp_query-from>
|
|
|
5606 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5607 <Hsp_hit-from>2605</Hsp_hit-from>
|
|
|
5608 <Hsp_hit-to>2611</Hsp_hit-to>
|
|
|
5609 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5610 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5611 <Hsp_identity>7</Hsp_identity>
|
|
|
5612 <Hsp_positive>7</Hsp_positive>
|
|
|
5613 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5614 <Hsp_align-len>7</Hsp_align-len>
|
|
|
5615 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
5616 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
5617 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
5618 </Hsp>
|
|
|
5619 </Hit_hsps>
|
|
|
5620 </Hit>
|
|
|
5621 <Hit>
|
|
|
5622 <Hit_num>82</Hit_num>
|
|
|
5623 <Hit_id>gi|10120918|pdb|1FFK|0</Hit_id>
|
|
|
5624 <Hit_def>Chain 0, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution</Hit_def>
|
|
|
5625 <Hit_accession>1FFK_0</Hit_accession>
|
|
|
5626 <Hit_len>2922</Hit_len>
|
|
|
5627 <Hit_hsps>
|
|
|
5628 <Hsp>
|
|
|
5629 <Hsp_num>1</Hsp_num>
|
|
|
5630 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
5631 <Hsp_score>9</Hsp_score>
|
|
|
5632 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
5633 <Hsp_query-from>4</Hsp_query-from>
|
|
|
5634 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5635 <Hsp_hit-from>2624</Hsp_hit-from>
|
|
|
5636 <Hsp_hit-to>2632</Hsp_hit-to>
|
|
|
5637 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5638 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5639 <Hsp_identity>9</Hsp_identity>
|
|
|
5640 <Hsp_positive>9</Hsp_positive>
|
|
|
5641 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5642 <Hsp_align-len>9</Hsp_align-len>
|
|
|
5643 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
5644 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
5645 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
5646 </Hsp>
|
|
|
5647 <Hsp>
|
|
|
5648 <Hsp_num>2</Hsp_num>
|
|
|
5649 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
5650 <Hsp_score>7</Hsp_score>
|
|
|
5651 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
5652 <Hsp_query-from>6</Hsp_query-from>
|
|
|
5653 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5654 <Hsp_hit-from>2605</Hsp_hit-from>
|
|
|
5655 <Hsp_hit-to>2611</Hsp_hit-to>
|
|
|
5656 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5657 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5658 <Hsp_identity>7</Hsp_identity>
|
|
|
5659 <Hsp_positive>7</Hsp_positive>
|
|
|
5660 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5661 <Hsp_align-len>7</Hsp_align-len>
|
|
|
5662 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
5663 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
5664 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
5665 </Hsp>
|
|
|
5666 </Hit_hsps>
|
|
|
5667 </Hit>
|
|
|
5668 <Hit>
|
|
|
5669 <Hit_num>83</Hit_num>
|
|
|
5670 <Hit_id>gi|10120728|pdb|1FG0|A</Hit_id>
|
|
|
5671 <Hit_def>Chain A, Large Ribosomal Subunit Complexed With A 13 Bp Minihelix- Puromycin Compound</Hit_def>
|
|
|
5672 <Hit_accession>1FG0_A</Hit_accession>
|
|
|
5673 <Hit_len>602</Hit_len>
|
|
|
5674 <Hit_hsps>
|
|
|
5675 <Hsp>
|
|
|
5676 <Hsp_num>1</Hsp_num>
|
|
|
5677 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
5678 <Hsp_score>9</Hsp_score>
|
|
|
5679 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
5680 <Hsp_query-from>4</Hsp_query-from>
|
|
|
5681 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5682 <Hsp_hit-from>563</Hsp_hit-from>
|
|
|
5683 <Hsp_hit-to>571</Hsp_hit-to>
|
|
|
5684 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5685 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5686 <Hsp_identity>9</Hsp_identity>
|
|
|
5687 <Hsp_positive>9</Hsp_positive>
|
|
|
5688 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5689 <Hsp_align-len>9</Hsp_align-len>
|
|
|
5690 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
5691 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
5692 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
5693 </Hsp>
|
|
|
5694 <Hsp>
|
|
|
5695 <Hsp_num>2</Hsp_num>
|
|
|
5696 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
5697 <Hsp_score>7</Hsp_score>
|
|
|
5698 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
5699 <Hsp_query-from>6</Hsp_query-from>
|
|
|
5700 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5701 <Hsp_hit-from>544</Hsp_hit-from>
|
|
|
5702 <Hsp_hit-to>550</Hsp_hit-to>
|
|
|
5703 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5704 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5705 <Hsp_identity>7</Hsp_identity>
|
|
|
5706 <Hsp_positive>7</Hsp_positive>
|
|
|
5707 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5708 <Hsp_align-len>7</Hsp_align-len>
|
|
|
5709 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
5710 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
5711 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
5712 </Hsp>
|
|
|
5713 </Hit_hsps>
|
|
|
5714 </Hit>
|
|
|
5715 <Hit>
|
|
|
5716 <Hit_num>84</Hit_num>
|
|
|
5717 <Hit_id>gi|10120727|pdb|1FFZ|A</Hit_id>
|
|
|
5718 <Hit_def>Chain A, Large Ribosomal Subunit Complexed With R(Cc)-Da-Puromycin</Hit_def>
|
|
|
5719 <Hit_accession>1FFZ_A</Hit_accession>
|
|
|
5720 <Hit_len>602</Hit_len>
|
|
|
5721 <Hit_hsps>
|
|
|
5722 <Hsp>
|
|
|
5723 <Hsp_num>1</Hsp_num>
|
|
|
5724 <Hsp_bit-score>18.3341</Hsp_bit-score>
|
|
|
5725 <Hsp_score>9</Hsp_score>
|
|
|
5726 <Hsp_evalue>11.9013</Hsp_evalue>
|
|
|
5727 <Hsp_query-from>4</Hsp_query-from>
|
|
|
5728 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5729 <Hsp_hit-from>563</Hsp_hit-from>
|
|
|
5730 <Hsp_hit-to>571</Hsp_hit-to>
|
|
|
5731 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5732 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5733 <Hsp_identity>9</Hsp_identity>
|
|
|
5734 <Hsp_positive>9</Hsp_positive>
|
|
|
5735 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5736 <Hsp_align-len>9</Hsp_align-len>
|
|
|
5737 <Hsp_qseq>CCGTCGTGA</Hsp_qseq>
|
|
|
5738 <Hsp_hseq>CCGTCGTGA</Hsp_hseq>
|
|
|
5739 <Hsp_midline>|||||||||</Hsp_midline>
|
|
|
5740 </Hsp>
|
|
|
5741 <Hsp>
|
|
|
5742 <Hsp_num>2</Hsp_num>
|
|
|
5743 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
5744 <Hsp_score>7</Hsp_score>
|
|
|
5745 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
5746 <Hsp_query-from>6</Hsp_query-from>
|
|
|
5747 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5748 <Hsp_hit-from>544</Hsp_hit-from>
|
|
|
5749 <Hsp_hit-to>550</Hsp_hit-to>
|
|
|
5750 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5751 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5752 <Hsp_identity>7</Hsp_identity>
|
|
|
5753 <Hsp_positive>7</Hsp_positive>
|
|
|
5754 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5755 <Hsp_align-len>7</Hsp_align-len>
|
|
|
5756 <Hsp_qseq>GTCGTGA</Hsp_qseq>
|
|
|
5757 <Hsp_hseq>GTCGTGA</Hsp_hseq>
|
|
|
5758 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
5759 </Hsp>
|
|
|
5760 </Hit_hsps>
|
|
|
5761 </Hit>
|
|
|
5762 <Hit>
|
|
|
5763 <Hit_num>85</Hit_num>
|
|
|
5764 <Hit_id>gi|558705015|pdb|4LGT|F</Hit_id>
|
|
|
5765 <Hit_def>Chain F, Crystal Structure Of The Catalytic Domain Of Rlub In Complex With A 21-nucleotide Rna Substrate</Hit_def>
|
|
|
5766 <Hit_accession>4LGT_F</Hit_accession>
|
|
|
5767 <Hit_len>21</Hit_len>
|
|
|
5768 <Hit_hsps>
|
|
|
5769 <Hsp>
|
|
|
5770 <Hsp_num>1</Hsp_num>
|
|
|
5771 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
5772 <Hsp_score>8</Hsp_score>
|
|
|
5773 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
5774 <Hsp_query-from>5</Hsp_query-from>
|
|
|
5775 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5776 <Hsp_hit-from>5</Hsp_hit-from>
|
|
|
5777 <Hsp_hit-to>12</Hsp_hit-to>
|
|
|
5778 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5779 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5780 <Hsp_identity>8</Hsp_identity>
|
|
|
5781 <Hsp_positive>8</Hsp_positive>
|
|
|
5782 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5783 <Hsp_align-len>8</Hsp_align-len>
|
|
|
5784 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
5785 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
5786 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
5787 </Hsp>
|
|
|
5788 </Hit_hsps>
|
|
|
5789 </Hit>
|
|
|
5790 <Hit>
|
|
|
5791 <Hit_num>86</Hit_num>
|
|
|
5792 <Hit_id>gi|558705013|pdb|4LGT|E</Hit_id>
|
|
|
5793 <Hit_def>Chain E, Crystal Structure Of The Catalytic Domain Of Rlub In Complex With A 21-nucleotide Rna Substrate</Hit_def>
|
|
|
5794 <Hit_accession>4LGT_E</Hit_accession>
|
|
|
5795 <Hit_len>21</Hit_len>
|
|
|
5796 <Hit_hsps>
|
|
|
5797 <Hsp>
|
|
|
5798 <Hsp_num>1</Hsp_num>
|
|
|
5799 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
5800 <Hsp_score>8</Hsp_score>
|
|
|
5801 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
5802 <Hsp_query-from>5</Hsp_query-from>
|
|
|
5803 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5804 <Hsp_hit-from>5</Hsp_hit-from>
|
|
|
5805 <Hsp_hit-to>12</Hsp_hit-to>
|
|
|
5806 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5807 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5808 <Hsp_identity>8</Hsp_identity>
|
|
|
5809 <Hsp_positive>8</Hsp_positive>
|
|
|
5810 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5811 <Hsp_align-len>8</Hsp_align-len>
|
|
|
5812 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
5813 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
5814 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
5815 </Hsp>
|
|
|
5816 </Hit_hsps>
|
|
|
5817 </Hit>
|
|
|
5818 <Hit>
|
|
|
5819 <Hit_num>87</Hit_num>
|
|
|
5820 <Hit_id>gi|529280935|pdb|4BTD|A</Hit_id>
|
|
|
5821 <Hit_def>Chain A, Thermus Thermophilus Ribosome</Hit_def>
|
|
|
5822 <Hit_accession>4BTD_A</Hit_accession>
|
|
|
5823 <Hit_len>2915</Hit_len>
|
|
|
5824 <Hit_hsps>
|
|
|
5825 <Hsp>
|
|
|
5826 <Hsp_num>1</Hsp_num>
|
|
|
5827 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
5828 <Hsp_score>8</Hsp_score>
|
|
|
5829 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
5830 <Hsp_query-from>8</Hsp_query-from>
|
|
|
5831 <Hsp_query-to>15</Hsp_query-to>
|
|
|
5832 <Hsp_hit-from>2048</Hsp_hit-from>
|
|
|
5833 <Hsp_hit-to>2055</Hsp_hit-to>
|
|
|
5834 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5835 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5836 <Hsp_identity>8</Hsp_identity>
|
|
|
5837 <Hsp_positive>8</Hsp_positive>
|
|
|
5838 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5839 <Hsp_align-len>8</Hsp_align-len>
|
|
|
5840 <Hsp_qseq>CGTGAAGA</Hsp_qseq>
|
|
|
5841 <Hsp_hseq>CGTGAAGA</Hsp_hseq>
|
|
|
5842 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
5843 </Hsp>
|
|
|
5844 <Hsp>
|
|
|
5845 <Hsp_num>2</Hsp_num>
|
|
|
5846 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
5847 <Hsp_score>8</Hsp_score>
|
|
|
5848 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
5849 <Hsp_query-from>5</Hsp_query-from>
|
|
|
5850 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5851 <Hsp_hit-from>2603</Hsp_hit-from>
|
|
|
5852 <Hsp_hit-to>2610</Hsp_hit-to>
|
|
|
5853 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5854 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5855 <Hsp_identity>8</Hsp_identity>
|
|
|
5856 <Hsp_positive>8</Hsp_positive>
|
|
|
5857 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5858 <Hsp_align-len>8</Hsp_align-len>
|
|
|
5859 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
5860 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
5861 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
5862 </Hsp>
|
|
|
5863 </Hit_hsps>
|
|
|
5864 </Hit>
|
|
|
5865 <Hit>
|
|
|
5866 <Hit_num>88</Hit_num>
|
|
|
5867 <Hit_id>gi|528082310|pdb|4L6J|A</Hit_id>
|
|
|
5868 <Hit_def>Chain A, Crystal Structure Of Blasticidin S Bound To Thermus Thermophilus 70s Ribosome. This File Contains The 50s Subunit And Blasticidin S Molecule From The First 70s Ribosome. >gi|528082364|pdb|4L6L|A Chain A, Crystal Structure Of Blasticidin S Bound To Thermus Thermophilus 70s Ribosome. This File Contains The 50s Subunit And Blasticidin S Molecule From The Second 70s Ribosome</Hit_def>
|
|
|
5869 <Hit_accession>4L6J_A</Hit_accession>
|
|
|
5870 <Hit_len>2879</Hit_len>
|
|
|
5871 <Hit_hsps>
|
|
|
5872 <Hsp>
|
|
|
5873 <Hsp_num>1</Hsp_num>
|
|
|
5874 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
5875 <Hsp_score>8</Hsp_score>
|
|
|
5876 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
5877 <Hsp_query-from>8</Hsp_query-from>
|
|
|
5878 <Hsp_query-to>15</Hsp_query-to>
|
|
|
5879 <Hsp_hit-from>2021</Hsp_hit-from>
|
|
|
5880 <Hsp_hit-to>2028</Hsp_hit-to>
|
|
|
5881 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5882 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5883 <Hsp_identity>8</Hsp_identity>
|
|
|
5884 <Hsp_positive>8</Hsp_positive>
|
|
|
5885 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5886 <Hsp_align-len>8</Hsp_align-len>
|
|
|
5887 <Hsp_qseq>CGTGAAGA</Hsp_qseq>
|
|
|
5888 <Hsp_hseq>CGTGAAGA</Hsp_hseq>
|
|
|
5889 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
5890 </Hsp>
|
|
|
5891 <Hsp>
|
|
|
5892 <Hsp_num>2</Hsp_num>
|
|
|
5893 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
5894 <Hsp_score>8</Hsp_score>
|
|
|
5895 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
5896 <Hsp_query-from>5</Hsp_query-from>
|
|
|
5897 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5898 <Hsp_hit-from>2576</Hsp_hit-from>
|
|
|
5899 <Hsp_hit-to>2583</Hsp_hit-to>
|
|
|
5900 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5901 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5902 <Hsp_identity>8</Hsp_identity>
|
|
|
5903 <Hsp_positive>8</Hsp_positive>
|
|
|
5904 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5905 <Hsp_align-len>8</Hsp_align-len>
|
|
|
5906 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
5907 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
5908 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
5909 </Hsp>
|
|
|
5910 </Hit_hsps>
|
|
|
5911 </Hit>
|
|
|
5912 <Hit>
|
|
|
5913 <Hit_num>89</Hit_num>
|
|
|
5914 <Hit_id>gi|520729408|pdb|4KFI|A</Hit_id>
|
|
|
5915 <Hit_def>Chain A, Crystal Structure Of The 70s Ribosome Bound With The Q253p Mutant Of Release Factor Rf2. 50s Of The A Subunit >gi|520729463|pdb|4KFL|A Chain A, Crystal Structure Of The 70s Ribosome Bound With The Q253p Mutant Of Release Factor Rf2. 50s Of The B Subunit</Hit_def>
|
|
|
5916 <Hit_accession>4KFI_A</Hit_accession>
|
|
|
5917 <Hit_len>2879</Hit_len>
|
|
|
5918 <Hit_hsps>
|
|
|
5919 <Hsp>
|
|
|
5920 <Hsp_num>1</Hsp_num>
|
|
|
5921 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
5922 <Hsp_score>8</Hsp_score>
|
|
|
5923 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
5924 <Hsp_query-from>8</Hsp_query-from>
|
|
|
5925 <Hsp_query-to>15</Hsp_query-to>
|
|
|
5926 <Hsp_hit-from>2021</Hsp_hit-from>
|
|
|
5927 <Hsp_hit-to>2028</Hsp_hit-to>
|
|
|
5928 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5929 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5930 <Hsp_identity>8</Hsp_identity>
|
|
|
5931 <Hsp_positive>8</Hsp_positive>
|
|
|
5932 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5933 <Hsp_align-len>8</Hsp_align-len>
|
|
|
5934 <Hsp_qseq>CGTGAAGA</Hsp_qseq>
|
|
|
5935 <Hsp_hseq>CGTGAAGA</Hsp_hseq>
|
|
|
5936 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
5937 </Hsp>
|
|
|
5938 <Hsp>
|
|
|
5939 <Hsp_num>2</Hsp_num>
|
|
|
5940 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
5941 <Hsp_score>8</Hsp_score>
|
|
|
5942 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
5943 <Hsp_query-from>5</Hsp_query-from>
|
|
|
5944 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5945 <Hsp_hit-from>2576</Hsp_hit-from>
|
|
|
5946 <Hsp_hit-to>2583</Hsp_hit-to>
|
|
|
5947 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5948 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5949 <Hsp_identity>8</Hsp_identity>
|
|
|
5950 <Hsp_positive>8</Hsp_positive>
|
|
|
5951 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5952 <Hsp_align-len>8</Hsp_align-len>
|
|
|
5953 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
5954 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
5955 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
5956 </Hsp>
|
|
|
5957 </Hit_hsps>
|
|
|
5958 </Hit>
|
|
|
5959 <Hit>
|
|
|
5960 <Hit_num>90</Hit_num>
|
|
|
5961 <Hit_id>gi|520728860|pdb|4K0Q|A</Hit_id>
|
|
|
5962 <Hit_def>Chain A, Crystal Structure Of Thermus Thermophilus 70s Containing Trnas And Mrna Stop Codon With Pseudouridine</Hit_def>
|
|
|
5963 <Hit_accession>4K0Q_A</Hit_accession>
|
|
|
5964 <Hit_len>2915</Hit_len>
|
|
|
5965 <Hit_hsps>
|
|
|
5966 <Hsp>
|
|
|
5967 <Hsp_num>1</Hsp_num>
|
|
|
5968 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
5969 <Hsp_score>8</Hsp_score>
|
|
|
5970 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
5971 <Hsp_query-from>8</Hsp_query-from>
|
|
|
5972 <Hsp_query-to>15</Hsp_query-to>
|
|
|
5973 <Hsp_hit-from>2048</Hsp_hit-from>
|
|
|
5974 <Hsp_hit-to>2055</Hsp_hit-to>
|
|
|
5975 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5976 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5977 <Hsp_identity>8</Hsp_identity>
|
|
|
5978 <Hsp_positive>8</Hsp_positive>
|
|
|
5979 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5980 <Hsp_align-len>8</Hsp_align-len>
|
|
|
5981 <Hsp_qseq>CGTGAAGA</Hsp_qseq>
|
|
|
5982 <Hsp_hseq>CGTGAAGA</Hsp_hseq>
|
|
|
5983 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
5984 </Hsp>
|
|
|
5985 <Hsp>
|
|
|
5986 <Hsp_num>2</Hsp_num>
|
|
|
5987 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
5988 <Hsp_score>8</Hsp_score>
|
|
|
5989 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
5990 <Hsp_query-from>5</Hsp_query-from>
|
|
|
5991 <Hsp_query-to>12</Hsp_query-to>
|
|
|
5992 <Hsp_hit-from>2603</Hsp_hit-from>
|
|
|
5993 <Hsp_hit-to>2610</Hsp_hit-to>
|
|
|
5994 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
5995 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
5996 <Hsp_identity>8</Hsp_identity>
|
|
|
5997 <Hsp_positive>8</Hsp_positive>
|
|
|
5998 <Hsp_gaps>0</Hsp_gaps>
|
|
|
5999 <Hsp_align-len>8</Hsp_align-len>
|
|
|
6000 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
6001 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
6002 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
6003 </Hsp>
|
|
|
6004 </Hit_hsps>
|
|
|
6005 </Hit>
|
|
|
6006 <Hit>
|
|
|
6007 <Hit_num>91</Hit_num>
|
|
|
6008 <Hit_id>gi|520728802|pdb|4K0M|A</Hit_id>
|
|
|
6009 <Hit_def>Chain A, Crystal Structure Of Thermus Thermophilus 70s Containing Trnas And Mrna Stop Codon With Pseudouridine</Hit_def>
|
|
|
6010 <Hit_accession>4K0M_A</Hit_accession>
|
|
|
6011 <Hit_len>2915</Hit_len>
|
|
|
6012 <Hit_hsps>
|
|
|
6013 <Hsp>
|
|
|
6014 <Hsp_num>1</Hsp_num>
|
|
|
6015 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
6016 <Hsp_score>8</Hsp_score>
|
|
|
6017 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
6018 <Hsp_query-from>8</Hsp_query-from>
|
|
|
6019 <Hsp_query-to>15</Hsp_query-to>
|
|
|
6020 <Hsp_hit-from>2048</Hsp_hit-from>
|
|
|
6021 <Hsp_hit-to>2055</Hsp_hit-to>
|
|
|
6022 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
6023 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
6024 <Hsp_identity>8</Hsp_identity>
|
|
|
6025 <Hsp_positive>8</Hsp_positive>
|
|
|
6026 <Hsp_gaps>0</Hsp_gaps>
|
|
|
6027 <Hsp_align-len>8</Hsp_align-len>
|
|
|
6028 <Hsp_qseq>CGTGAAGA</Hsp_qseq>
|
|
|
6029 <Hsp_hseq>CGTGAAGA</Hsp_hseq>
|
|
|
6030 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
6031 </Hsp>
|
|
|
6032 <Hsp>
|
|
|
6033 <Hsp_num>2</Hsp_num>
|
|
|
6034 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
6035 <Hsp_score>8</Hsp_score>
|
|
|
6036 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
6037 <Hsp_query-from>5</Hsp_query-from>
|
|
|
6038 <Hsp_query-to>12</Hsp_query-to>
|
|
|
6039 <Hsp_hit-from>2603</Hsp_hit-from>
|
|
|
6040 <Hsp_hit-to>2610</Hsp_hit-to>
|
|
|
6041 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
6042 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
6043 <Hsp_identity>8</Hsp_identity>
|
|
|
6044 <Hsp_positive>8</Hsp_positive>
|
|
|
6045 <Hsp_gaps>0</Hsp_gaps>
|
|
|
6046 <Hsp_align-len>8</Hsp_align-len>
|
|
|
6047 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
6048 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
6049 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
6050 </Hsp>
|
|
|
6051 </Hit_hsps>
|
|
|
6052 </Hit>
|
|
|
6053 <Hit>
|
|
|
6054 <Hit_num>92</Hit_num>
|
|
|
6055 <Hit_id>gi|512125286|pdb|3J3V|A</Hit_id>
|
|
|
6056 <Hit_def>Chain A, Atomic Model Of The Immature 50s Subunit From Bacillus Subtilis (state I-a)</Hit_def>
|
|
|
6057 <Hit_accession>3J3V_A</Hit_accession>
|
|
|
6058 <Hit_len>2927</Hit_len>
|
|
|
6059 <Hit_hsps>
|
|
|
6060 <Hsp>
|
|
|
6061 <Hsp_num>1</Hsp_num>
|
|
|
6062 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
6063 <Hsp_score>8</Hsp_score>
|
|
|
6064 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
6065 <Hsp_query-from>5</Hsp_query-from>
|
|
|
6066 <Hsp_query-to>12</Hsp_query-to>
|
|
|
6067 <Hsp_hit-from>2620</Hsp_hit-from>
|
|
|
6068 <Hsp_hit-to>2627</Hsp_hit-to>
|
|
|
6069 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
6070 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
6071 <Hsp_identity>8</Hsp_identity>
|
|
|
6072 <Hsp_positive>8</Hsp_positive>
|
|
|
6073 <Hsp_gaps>0</Hsp_gaps>
|
|
|
6074 <Hsp_align-len>8</Hsp_align-len>
|
|
|
6075 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
6076 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
6077 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
6078 </Hsp>
|
|
|
6079 <Hsp>
|
|
|
6080 <Hsp_num>2</Hsp_num>
|
|
|
6081 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
6082 <Hsp_score>7</Hsp_score>
|
|
|
6083 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
6084 <Hsp_query-from>10</Hsp_query-from>
|
|
|
6085 <Hsp_query-to>16</Hsp_query-to>
|
|
|
6086 <Hsp_hit-from>340</Hsp_hit-from>
|
|
|
6087 <Hsp_hit-to>346</Hsp_hit-to>
|
|
|
6088 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
6089 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
6090 <Hsp_identity>7</Hsp_identity>
|
|
|
6091 <Hsp_positive>7</Hsp_positive>
|
|
|
6092 <Hsp_gaps>0</Hsp_gaps>
|
|
|
6093 <Hsp_align-len>7</Hsp_align-len>
|
|
|
6094 <Hsp_qseq>TGAAGAG</Hsp_qseq>
|
|
|
6095 <Hsp_hseq>TGAAGAG</Hsp_hseq>
|
|
|
6096 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
6097 </Hsp>
|
|
|
6098 <Hsp>
|
|
|
6099 <Hsp_num>3</Hsp_num>
|
|
|
6100 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
6101 <Hsp_score>7</Hsp_score>
|
|
|
6102 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
6103 <Hsp_query-from>3</Hsp_query-from>
|
|
|
6104 <Hsp_query-to>9</Hsp_query-to>
|
|
|
6105 <Hsp_hit-from>440</Hsp_hit-from>
|
|
|
6106 <Hsp_hit-to>446</Hsp_hit-to>
|
|
|
6107 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
6108 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
6109 <Hsp_identity>7</Hsp_identity>
|
|
|
6110 <Hsp_positive>7</Hsp_positive>
|
|
|
6111 <Hsp_gaps>0</Hsp_gaps>
|
|
|
6112 <Hsp_align-len>7</Hsp_align-len>
|
|
|
6113 <Hsp_qseq>TCCGTCG</Hsp_qseq>
|
|
|
6114 <Hsp_hseq>TCCGTCG</Hsp_hseq>
|
|
|
6115 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
6116 </Hsp>
|
|
|
6117 <Hsp>
|
|
|
6118 <Hsp_num>4</Hsp_num>
|
|
|
6119 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
6120 <Hsp_score>7</Hsp_score>
|
|
|
6121 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
6122 <Hsp_query-from>9</Hsp_query-from>
|
|
|
6123 <Hsp_query-to>15</Hsp_query-to>
|
|
|
6124 <Hsp_hit-from>2056</Hsp_hit-from>
|
|
|
6125 <Hsp_hit-to>2062</Hsp_hit-to>
|
|
|
6126 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
6127 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
6128 <Hsp_identity>7</Hsp_identity>
|
|
|
6129 <Hsp_positive>7</Hsp_positive>
|
|
|
6130 <Hsp_gaps>0</Hsp_gaps>
|
|
|
6131 <Hsp_align-len>7</Hsp_align-len>
|
|
|
6132 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
6133 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
6134 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
6135 </Hsp>
|
|
|
6136 <Hsp>
|
|
|
6137 <Hsp_num>5</Hsp_num>
|
|
|
6138 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
6139 <Hsp_score>7</Hsp_score>
|
|
|
6140 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
6141 <Hsp_query-from>3</Hsp_query-from>
|
|
|
6142 <Hsp_query-to>9</Hsp_query-to>
|
|
|
6143 <Hsp_hit-from>2644</Hsp_hit-from>
|
|
|
6144 <Hsp_hit-to>2650</Hsp_hit-to>
|
|
|
6145 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
6146 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
6147 <Hsp_identity>7</Hsp_identity>
|
|
|
6148 <Hsp_positive>7</Hsp_positive>
|
|
|
6149 <Hsp_gaps>0</Hsp_gaps>
|
|
|
6150 <Hsp_align-len>7</Hsp_align-len>
|
|
|
6151 <Hsp_qseq>TCCGTCG</Hsp_qseq>
|
|
|
6152 <Hsp_hseq>TCCGTCG</Hsp_hseq>
|
|
|
6153 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
6154 </Hsp>
|
|
|
6155 </Hit_hsps>
|
|
|
6156 </Hit>
|
|
|
6157 <Hit>
|
|
|
6158 <Hit_num>93</Hit_num>
|
|
|
6159 <Hit_id>gi|512125306|pdb|3J3W|A</Hit_id>
|
|
|
6160 <Hit_def>Chain A, Atomic Model Of The Immature 50s Subunit From Bacillus Subtilis (state Ii-a)</Hit_def>
|
|
|
6161 <Hit_accession>3J3W_A</Hit_accession>
|
|
|
6162 <Hit_len>2927</Hit_len>
|
|
|
6163 <Hit_hsps>
|
|
|
6164 <Hsp>
|
|
|
6165 <Hsp_num>1</Hsp_num>
|
|
|
6166 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
6167 <Hsp_score>8</Hsp_score>
|
|
|
6168 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
6169 <Hsp_query-from>5</Hsp_query-from>
|
|
|
6170 <Hsp_query-to>12</Hsp_query-to>
|
|
|
6171 <Hsp_hit-from>2620</Hsp_hit-from>
|
|
|
6172 <Hsp_hit-to>2627</Hsp_hit-to>
|
|
|
6173 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
6174 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
6175 <Hsp_identity>8</Hsp_identity>
|
|
|
6176 <Hsp_positive>8</Hsp_positive>
|
|
|
6177 <Hsp_gaps>0</Hsp_gaps>
|
|
|
6178 <Hsp_align-len>8</Hsp_align-len>
|
|
|
6179 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
6180 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
6181 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
6182 </Hsp>
|
|
|
6183 <Hsp>
|
|
|
6184 <Hsp_num>2</Hsp_num>
|
|
|
6185 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
6186 <Hsp_score>7</Hsp_score>
|
|
|
6187 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
6188 <Hsp_query-from>10</Hsp_query-from>
|
|
|
6189 <Hsp_query-to>16</Hsp_query-to>
|
|
|
6190 <Hsp_hit-from>340</Hsp_hit-from>
|
|
|
6191 <Hsp_hit-to>346</Hsp_hit-to>
|
|
|
6192 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
6193 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
6194 <Hsp_identity>7</Hsp_identity>
|
|
|
6195 <Hsp_positive>7</Hsp_positive>
|
|
|
6196 <Hsp_gaps>0</Hsp_gaps>
|
|
|
6197 <Hsp_align-len>7</Hsp_align-len>
|
|
|
6198 <Hsp_qseq>TGAAGAG</Hsp_qseq>
|
|
|
6199 <Hsp_hseq>TGAAGAG</Hsp_hseq>
|
|
|
6200 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
6201 </Hsp>
|
|
|
6202 <Hsp>
|
|
|
6203 <Hsp_num>3</Hsp_num>
|
|
|
6204 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
6205 <Hsp_score>7</Hsp_score>
|
|
|
6206 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
6207 <Hsp_query-from>3</Hsp_query-from>
|
|
|
6208 <Hsp_query-to>9</Hsp_query-to>
|
|
|
6209 <Hsp_hit-from>440</Hsp_hit-from>
|
|
|
6210 <Hsp_hit-to>446</Hsp_hit-to>
|
|
|
6211 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
6212 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
6213 <Hsp_identity>7</Hsp_identity>
|
|
|
6214 <Hsp_positive>7</Hsp_positive>
|
|
|
6215 <Hsp_gaps>0</Hsp_gaps>
|
|
|
6216 <Hsp_align-len>7</Hsp_align-len>
|
|
|
6217 <Hsp_qseq>TCCGTCG</Hsp_qseq>
|
|
|
6218 <Hsp_hseq>TCCGTCG</Hsp_hseq>
|
|
|
6219 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
6220 </Hsp>
|
|
|
6221 <Hsp>
|
|
|
6222 <Hsp_num>4</Hsp_num>
|
|
|
6223 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
6224 <Hsp_score>7</Hsp_score>
|
|
|
6225 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
6226 <Hsp_query-from>9</Hsp_query-from>
|
|
|
6227 <Hsp_query-to>15</Hsp_query-to>
|
|
|
6228 <Hsp_hit-from>2056</Hsp_hit-from>
|
|
|
6229 <Hsp_hit-to>2062</Hsp_hit-to>
|
|
|
6230 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
6231 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
6232 <Hsp_identity>7</Hsp_identity>
|
|
|
6233 <Hsp_positive>7</Hsp_positive>
|
|
|
6234 <Hsp_gaps>0</Hsp_gaps>
|
|
|
6235 <Hsp_align-len>7</Hsp_align-len>
|
|
|
6236 <Hsp_qseq>GTGAAGA</Hsp_qseq>
|
|
|
6237 <Hsp_hseq>GTGAAGA</Hsp_hseq>
|
|
|
6238 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
6239 </Hsp>
|
|
|
6240 <Hsp>
|
|
|
6241 <Hsp_num>5</Hsp_num>
|
|
|
6242 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
6243 <Hsp_score>7</Hsp_score>
|
|
|
6244 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
6245 <Hsp_query-from>3</Hsp_query-from>
|
|
|
6246 <Hsp_query-to>9</Hsp_query-to>
|
|
|
6247 <Hsp_hit-from>2644</Hsp_hit-from>
|
|
|
6248 <Hsp_hit-to>2650</Hsp_hit-to>
|
|
|
6249 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
6250 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
6251 <Hsp_identity>7</Hsp_identity>
|
|
|
6252 <Hsp_positive>7</Hsp_positive>
|
|
|
6253 <Hsp_gaps>0</Hsp_gaps>
|
|
|
6254 <Hsp_align-len>7</Hsp_align-len>
|
|
|
6255 <Hsp_qseq>TCCGTCG</Hsp_qseq>
|
|
|
6256 <Hsp_hseq>TCCGTCG</Hsp_hseq>
|
|
|
6257 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
6258 </Hsp>
|
|
|
6259 </Hit_hsps>
|
|
|
6260 </Hit>
|
|
|
6261 <Hit>
|
|
|
6262 <Hit_num>94</Hit_num>
|
|
|
6263 <Hit_id>gi|482676744|pdb|3V6X|A</Hit_id>
|
|
|
6264 <Hit_def>Chain A, Crystal Structure Of The Bacterial Ribosome Ram Mutation G347u. This Entry Contains The 50s Ribosomal Subunit Of The Second 70s Molecule In The Asymmetric Unit</Hit_def>
|
|
|
6265 <Hit_accession>3V6X_A</Hit_accession>
|
|
|
6266 <Hit_len>2916</Hit_len>
|
|
|
6267 <Hit_hsps>
|
|
|
6268 <Hsp>
|
|
|
6269 <Hsp_num>1</Hsp_num>
|
|
|
6270 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
6271 <Hsp_score>8</Hsp_score>
|
|
|
6272 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
6273 <Hsp_query-from>8</Hsp_query-from>
|
|
|
6274 <Hsp_query-to>15</Hsp_query-to>
|
|
|
6275 <Hsp_hit-from>2048</Hsp_hit-from>
|
|
|
6276 <Hsp_hit-to>2055</Hsp_hit-to>
|
|
|
6277 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
6278 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
6279 <Hsp_identity>8</Hsp_identity>
|
|
|
6280 <Hsp_positive>8</Hsp_positive>
|
|
|
6281 <Hsp_gaps>0</Hsp_gaps>
|
|
|
6282 <Hsp_align-len>8</Hsp_align-len>
|
|
|
6283 <Hsp_qseq>CGTGAAGA</Hsp_qseq>
|
|
|
6284 <Hsp_hseq>CGTGAAGA</Hsp_hseq>
|
|
|
6285 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
6286 </Hsp>
|
|
|
6287 <Hsp>
|
|
|
6288 <Hsp_num>2</Hsp_num>
|
|
|
6289 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
6290 <Hsp_score>8</Hsp_score>
|
|
|
6291 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
6292 <Hsp_query-from>5</Hsp_query-from>
|
|
|
6293 <Hsp_query-to>12</Hsp_query-to>
|
|
|
6294 <Hsp_hit-from>2603</Hsp_hit-from>
|
|
|
6295 <Hsp_hit-to>2610</Hsp_hit-to>
|
|
|
6296 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
6297 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
6298 <Hsp_identity>8</Hsp_identity>
|
|
|
6299 <Hsp_positive>8</Hsp_positive>
|
|
|
6300 <Hsp_gaps>0</Hsp_gaps>
|
|
|
6301 <Hsp_align-len>8</Hsp_align-len>
|
|
|
6302 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
6303 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
6304 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
6305 </Hsp>
|
|
|
6306 </Hit_hsps>
|
|
|
6307 </Hit>
|
|
|
6308 <Hit>
|
|
|
6309 <Hit_num>95</Hit_num>
|
|
|
6310 <Hit_id>gi|482676712|pdb|3V6W|A</Hit_id>
|
|
|
6311 <Hit_def>Chain A, Crystal Structure Of The Bacterial Ribosome Ram Mutation G347u. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit</Hit_def>
|
|
|
6312 <Hit_accession>3V6W_A</Hit_accession>
|
|
|
6313 <Hit_len>2916</Hit_len>
|
|
|
6314 <Hit_hsps>
|
|
|
6315 <Hsp>
|
|
|
6316 <Hsp_num>1</Hsp_num>
|
|
|
6317 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
6318 <Hsp_score>8</Hsp_score>
|
|
|
6319 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
6320 <Hsp_query-from>8</Hsp_query-from>
|
|
|
6321 <Hsp_query-to>15</Hsp_query-to>
|
|
|
6322 <Hsp_hit-from>2048</Hsp_hit-from>
|
|
|
6323 <Hsp_hit-to>2055</Hsp_hit-to>
|
|
|
6324 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
6325 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
6326 <Hsp_identity>8</Hsp_identity>
|
|
|
6327 <Hsp_positive>8</Hsp_positive>
|
|
|
6328 <Hsp_gaps>0</Hsp_gaps>
|
|
|
6329 <Hsp_align-len>8</Hsp_align-len>
|
|
|
6330 <Hsp_qseq>CGTGAAGA</Hsp_qseq>
|
|
|
6331 <Hsp_hseq>CGTGAAGA</Hsp_hseq>
|
|
|
6332 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
6333 </Hsp>
|
|
|
6334 <Hsp>
|
|
|
6335 <Hsp_num>2</Hsp_num>
|
|
|
6336 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
6337 <Hsp_score>8</Hsp_score>
|
|
|
6338 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
6339 <Hsp_query-from>5</Hsp_query-from>
|
|
|
6340 <Hsp_query-to>12</Hsp_query-to>
|
|
|
6341 <Hsp_hit-from>2603</Hsp_hit-from>
|
|
|
6342 <Hsp_hit-to>2610</Hsp_hit-to>
|
|
|
6343 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
6344 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
6345 <Hsp_identity>8</Hsp_identity>
|
|
|
6346 <Hsp_positive>8</Hsp_positive>
|
|
|
6347 <Hsp_gaps>0</Hsp_gaps>
|
|
|
6348 <Hsp_align-len>8</Hsp_align-len>
|
|
|
6349 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
6350 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
6351 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
6352 </Hsp>
|
|
|
6353 </Hit_hsps>
|
|
|
6354 </Hit>
|
|
|
6355 <Hit>
|
|
|
6356 <Hit_num>96</Hit_num>
|
|
|
6357 <Hit_id>gi|428697829|pdb|2YMI|DD</Hit_id>
|
|
|
6358 <Hit_def>Chain d, The Cryo-Em Structure Of A 3d Dna-Origami Object</Hit_def>
|
|
|
6359 <Hit_accession>2YMI_DD</Hit_accession>
|
|
|
6360 <Hit_len>56</Hit_len>
|
|
|
6361 <Hit_hsps>
|
|
|
6362 <Hsp>
|
|
|
6363 <Hsp_num>1</Hsp_num>
|
|
|
6364 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
6365 <Hsp_score>8</Hsp_score>
|
|
|
6366 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
6367 <Hsp_query-from>5</Hsp_query-from>
|
|
|
6368 <Hsp_query-to>12</Hsp_query-to>
|
|
|
6369 <Hsp_hit-from>52</Hsp_hit-from>
|
|
|
6370 <Hsp_hit-to>45</Hsp_hit-to>
|
|
|
6371 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
6372 <Hsp_hit-frame>-1</Hsp_hit-frame>
|
|
|
6373 <Hsp_identity>8</Hsp_identity>
|
|
|
6374 <Hsp_positive>8</Hsp_positive>
|
|
|
6375 <Hsp_gaps>0</Hsp_gaps>
|
|
|
6376 <Hsp_align-len>8</Hsp_align-len>
|
|
|
6377 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
6378 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
6379 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
6380 </Hsp>
|
|
|
6381 </Hit_hsps>
|
|
|
6382 </Hit>
|
|
|
6383 <Hit>
|
|
|
6384 <Hit_num>97</Hit_num>
|
|
|
6385 <Hit_id>gi|428697789|pdb|2YMF|A</Hit_id>
|
|
|
6386 <Hit_def>Chain A, The Cryo-Em Structure Of A 3d Dna-Origami Object</Hit_def>
|
|
|
6387 <Hit_accession>2YMF_A</Hit_accession>
|
|
|
6388 <Hit_len>4896</Hit_len>
|
|
|
6389 <Hit_hsps>
|
|
|
6390 <Hsp>
|
|
|
6391 <Hsp_num>1</Hsp_num>
|
|
|
6392 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
6393 <Hsp_score>8</Hsp_score>
|
|
|
6394 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
6395 <Hsp_query-from>5</Hsp_query-from>
|
|
|
6396 <Hsp_query-to>12</Hsp_query-to>
|
|
|
6397 <Hsp_hit-from>575</Hsp_hit-from>
|
|
|
6398 <Hsp_hit-to>582</Hsp_hit-to>
|
|
|
6399 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
6400 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
6401 <Hsp_identity>8</Hsp_identity>
|
|
|
6402 <Hsp_positive>8</Hsp_positive>
|
|
|
6403 <Hsp_gaps>0</Hsp_gaps>
|
|
|
6404 <Hsp_align-len>8</Hsp_align-len>
|
|
|
6405 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
6406 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
6407 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
6408 </Hsp>
|
|
|
6409 <Hsp>
|
|
|
6410 <Hsp_num>2</Hsp_num>
|
|
|
6411 <Hsp_bit-score>14.3694</Hsp_bit-score>
|
|
|
6412 <Hsp_score>7</Hsp_score>
|
|
|
6413 <Hsp_evalue>185.82</Hsp_evalue>
|
|
|
6414 <Hsp_query-from>4</Hsp_query-from>
|
|
|
6415 <Hsp_query-to>10</Hsp_query-to>
|
|
|
6416 <Hsp_hit-from>561</Hsp_hit-from>
|
|
|
6417 <Hsp_hit-to>567</Hsp_hit-to>
|
|
|
6418 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
6419 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
6420 <Hsp_identity>7</Hsp_identity>
|
|
|
6421 <Hsp_positive>7</Hsp_positive>
|
|
|
6422 <Hsp_gaps>0</Hsp_gaps>
|
|
|
6423 <Hsp_align-len>7</Hsp_align-len>
|
|
|
6424 <Hsp_qseq>CCGTCGT</Hsp_qseq>
|
|
|
6425 <Hsp_hseq>CCGTCGT</Hsp_hseq>
|
|
|
6426 <Hsp_midline>|||||||</Hsp_midline>
|
|
|
6427 </Hsp>
|
|
|
6428 </Hit_hsps>
|
|
|
6429 </Hit>
|
|
|
6430 <Hit>
|
|
|
6431 <Hit_num>98</Hit_num>
|
|
|
6432 <Hit_id>gi|396639330|pdb|2J01|A</Hit_id>
|
|
|
6433 <Hit_def>Chain A, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. >gi|396639355|pdb|2J03|A Chain A, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4). This File Contains The 50s Subunit From Molecule Ii.</Hit_def>
|
|
|
6434 <Hit_accession>2J01_A</Hit_accession>
|
|
|
6435 <Hit_len>2787</Hit_len>
|
|
|
6436 <Hit_hsps>
|
|
|
6437 <Hsp>
|
|
|
6438 <Hsp_num>1</Hsp_num>
|
|
|
6439 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
6440 <Hsp_score>8</Hsp_score>
|
|
|
6441 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
6442 <Hsp_query-from>8</Hsp_query-from>
|
|
|
6443 <Hsp_query-to>15</Hsp_query-to>
|
|
|
6444 <Hsp_hit-from>1948</Hsp_hit-from>
|
|
|
6445 <Hsp_hit-to>1955</Hsp_hit-to>
|
|
|
6446 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
6447 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
6448 <Hsp_identity>8</Hsp_identity>
|
|
|
6449 <Hsp_positive>8</Hsp_positive>
|
|
|
6450 <Hsp_gaps>0</Hsp_gaps>
|
|
|
6451 <Hsp_align-len>8</Hsp_align-len>
|
|
|
6452 <Hsp_qseq>CGTGAAGA</Hsp_qseq>
|
|
|
6453 <Hsp_hseq>CGTGAAGA</Hsp_hseq>
|
|
|
6454 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
6455 </Hsp>
|
|
|
6456 <Hsp>
|
|
|
6457 <Hsp_num>2</Hsp_num>
|
|
|
6458 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
6459 <Hsp_score>8</Hsp_score>
|
|
|
6460 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
6461 <Hsp_query-from>5</Hsp_query-from>
|
|
|
6462 <Hsp_query-to>12</Hsp_query-to>
|
|
|
6463 <Hsp_hit-from>2474</Hsp_hit-from>
|
|
|
6464 <Hsp_hit-to>2481</Hsp_hit-to>
|
|
|
6465 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
6466 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
6467 <Hsp_identity>8</Hsp_identity>
|
|
|
6468 <Hsp_positive>8</Hsp_positive>
|
|
|
6469 <Hsp_gaps>0</Hsp_gaps>
|
|
|
6470 <Hsp_align-len>8</Hsp_align-len>
|
|
|
6471 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
6472 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
6473 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
6474 </Hsp>
|
|
|
6475 </Hit_hsps>
|
|
|
6476 </Hit>
|
|
|
6477 <Hit>
|
|
|
6478 <Hit_num>99</Hit_num>
|
|
|
6479 <Hit_id>gi|393715375|pdb|4AQX|C</Hit_id>
|
|
|
6480 <Hit_def>Chain C, Crystal Structure Of I-Crei Complexed With Its Target Methylated At Position Plus 2 (In The B Strand) In The Presence Of Magnesium</Hit_def>
|
|
|
6481 <Hit_accession>4AQX_C</Hit_accession>
|
|
|
6482 <Hit_len>14</Hit_len>
|
|
|
6483 <Hit_hsps>
|
|
|
6484 <Hsp>
|
|
|
6485 <Hsp_num>1</Hsp_num>
|
|
|
6486 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
6487 <Hsp_score>8</Hsp_score>
|
|
|
6488 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
6489 <Hsp_query-from>5</Hsp_query-from>
|
|
|
6490 <Hsp_query-to>12</Hsp_query-to>
|
|
|
6491 <Hsp_hit-from>7</Hsp_hit-from>
|
|
|
6492 <Hsp_hit-to>14</Hsp_hit-to>
|
|
|
6493 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
6494 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
6495 <Hsp_identity>8</Hsp_identity>
|
|
|
6496 <Hsp_positive>8</Hsp_positive>
|
|
|
6497 <Hsp_gaps>0</Hsp_gaps>
|
|
|
6498 <Hsp_align-len>8</Hsp_align-len>
|
|
|
6499 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
6500 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
6501 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
6502 </Hsp>
|
|
|
6503 </Hit_hsps>
|
|
|
6504 </Hit>
|
|
|
6505 <Hit>
|
|
|
6506 <Hit_num>100</Hit_num>
|
|
|
6507 <Hit_id>gi|393715371|pdb|4AQU|C</Hit_id>
|
|
|
6508 <Hit_def>Chain C, Crystal Structure Of I-Crei Complexed With Its Target Methylated At Position Plus 2 (In The B Strand) In The Presence Of Calcium</Hit_def>
|
|
|
6509 <Hit_accession>4AQU_C</Hit_accession>
|
|
|
6510 <Hit_len>24</Hit_len>
|
|
|
6511 <Hit_hsps>
|
|
|
6512 <Hsp>
|
|
|
6513 <Hsp_num>1</Hsp_num>
|
|
|
6514 <Hsp_bit-score>16.3517</Hsp_bit-score>
|
|
|
6515 <Hsp_score>8</Hsp_score>
|
|
|
6516 <Hsp_evalue>47.0266</Hsp_evalue>
|
|
|
6517 <Hsp_query-from>5</Hsp_query-from>
|
|
|
6518 <Hsp_query-to>12</Hsp_query-to>
|
|
|
6519 <Hsp_hit-from>7</Hsp_hit-from>
|
|
|
6520 <Hsp_hit-to>14</Hsp_hit-to>
|
|
|
6521 <Hsp_query-frame>1</Hsp_query-frame>
|
|
|
6522 <Hsp_hit-frame>1</Hsp_hit-frame>
|
|
|
6523 <Hsp_identity>8</Hsp_identity>
|
|
|
6524 <Hsp_positive>8</Hsp_positive>
|
|
|
6525 <Hsp_gaps>0</Hsp_gaps>
|
|
|
6526 <Hsp_align-len>8</Hsp_align-len>
|
|
|
6527 <Hsp_qseq>CGTCGTGA</Hsp_qseq>
|
|
|
6528 <Hsp_hseq>CGTCGTGA</Hsp_hseq>
|
|
|
6529 <Hsp_midline>||||||||</Hsp_midline>
|
|
|
6530 </Hsp>
|
|
|
6531 </Hit_hsps>
|
|
|
6532 </Hit>
|
|
|
6533 </Iteration_hits>
|
|
|
6534 <Iteration_stat>
|
|
|
6535 <Statistics>
|
|
|
6536 <Statistics_db-num>8975</Statistics_db-num>
|
|
|
6537 <Statistics_db-len>885284</Statistics_db-len>
|
|
|
6538 <Statistics_hsp-len>0</Statistics_hsp-len>
|
|
|
6539 <Statistics_eff-space>0</Statistics_eff-space>
|
|
|
6540 <Statistics_kappa>0.710602795216363</Statistics_kappa>
|
|
|
6541 <Statistics_lambda>1.37406312246009</Statistics_lambda>
|
|
|
6542 <Statistics_entropy>1.30724660390929</Statistics_entropy>
|
|
|
6543 </Statistics>
|
|
|
6544 </Iteration_stat>
|
|
|
6545 </Iteration>
|
|
|
6546 </BlastOutput_iterations>
|
|
|
6547 </BlastOutput>
|
|
|
6548
|
