Mercurial > repos > iuc > virannot_blast2tsv

annotate test-data/index.html @ 1:0c7f6833f9ad draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 16701bfbffd605805e847897799251ab748f559f
author iuc
date Sun, 08 Sep 2024 14:08:33 +0000
parents b82ce29791e7
children
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b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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1 <html>
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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2 <head>
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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3 <title>rps2tree</title><script type="text/javascript" src="https://www.gstatic.com/charts/loader.js"></script>
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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4 <script type="text/javascript">
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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5 google.charts.load('current', {'packages':['table']});
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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6 google.charts.setOnLoadCallback(pfam02123_pfam02123_RdRP_4);
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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7 function pfam02123_pfam02123_RdRP_4() {
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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8 var data = new google.visualization.DataTable();
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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9 data.addColumn('string', '#OTU_name');
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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10 data.addColumn('number', 'ds2020-267');
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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11 data.addColumn('number', 'ds2020-328');
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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12 data.addColumn('string', 'taxonomy');
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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13 data.addColumn('string', 'contigs_list');
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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14 data.addRows([
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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15 ['OTU_1',2258,77,'Viruses Wuhan insect virus 27','ds2020-267_16,ds2020-267_4,ds2020-328_97,ds2020-328_98'],
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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16 ['OTU_2',7516,0,'Viruses Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Quadriviridae Quadrivirus Rosellinia necatrix quadrivirus 1','ds2020-267_2'],
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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17 ['OTU_3',1161,0,'Viruses Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Quadriviridae Quadrivirus Rosellinia necatrix quadrivirus 1','ds2020-267_6'],
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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18 ['OTU_4',0,77,'Viruses Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Totiviridae Totivirus Scheffersomyces segobiensis virus L','ds2020-328_109']
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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19 ]);
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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20 var table = new google.visualization.Table(document.getElementById('pfam02123_pfam02123_RdRP_4_div'));
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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21 table.draw(data, {showRowNumber: false, width: '70%', height: '70%'});
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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22
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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23 }
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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24 google.charts.setOnLoadCallback(pfam00680_pfam00680_RdRP_1);
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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25 function pfam00680_pfam00680_RdRP_1() {
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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26 var data = new google.visualization.DataTable();
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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27 data.addColumn('string', '#OTU_name');
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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28 data.addColumn('number', 'ds2020-267');
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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29 data.addColumn('string', 'taxonomy');
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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30 data.addColumn('string', 'contigs_list');
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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31 data.addRows([
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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32 ['OTU_1',912,'Viruses Cryphonectria parasitica bipartite mycovirus 1','ds2020-267_21'],
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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33 ['OTU_2',3373,'Viruses Penicillium aurantiogriseum partiti-like virus','ds2020-267_8']
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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34 ]);
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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35 var table = new google.visualization.Table(document.getElementById('pfam00680_pfam00680_RdRP_1_div'));
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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36 table.draw(data, {showRowNumber: false, width: '70%', height: '70%'});
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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37
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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38 }
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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39 google.charts.setOnLoadCallback(pfam00665_pfam00665_rve);
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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40 function pfam00665_pfam00665_rve() {
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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41 var data = new google.visualization.DataTable();
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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42 data.addColumn('string', '#OTU_name');
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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43 data.addColumn('number', 'ds2020-328');
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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44 data.addColumn('string', 'taxonomy');
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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45 data.addColumn('string', 'contigs_list');
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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46 data.addRows([
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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47 ['OTU_1',104,'Unknown','ds2020-328_118']
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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48 ]);
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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49 var table = new google.visualization.Table(document.getElementById('pfam00665_pfam00665_rve_div'));
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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50 table.draw(data, {showRowNumber: false, width: '70%', height: '70%'});
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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51
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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52 }
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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53 google.charts.setOnLoadCallback(pfam01443_pfam01443_Viral_helicase1);
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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54 function pfam01443_pfam01443_Viral_helicase1() {
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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55 var data = new google.visualization.DataTable();
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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56 data.addColumn('string', '#OTU_name');
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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57 data.addColumn('number', 'ds2020-328');
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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58 data.addColumn('string', 'taxonomy');
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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59 data.addColumn('string', 'contigs_list');
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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60 data.addRows([
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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61 ['OTU_1',164,'Viruses Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Ilarvirus Prune dwarf virus','ds2020-328_26']
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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62 ]);
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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63 var table = new google.visualization.Table(document.getElementById('pfam01443_pfam01443_Viral_helicase1_div'));
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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64 table.draw(data, {showRowNumber: false, width: '70%', height: '70%'});
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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65
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66 }
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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67 google.charts.setOnLoadCallback(pfam00078_pfam00078_RVT_1);
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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68 function pfam00078_pfam00078_RVT_1() {
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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69 var data = new google.visualization.DataTable();
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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70 data.addColumn('string', '#OTU_name');
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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71 data.addColumn('number', 'ds2020-328');
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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72 data.addColumn('string', 'taxonomy');
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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73 data.addColumn('string', 'contigs_list');
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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74 data.addRows([
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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75 ['OTU_1',0,'Unknown','ds2020-328_43']
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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76 ]);
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
iuc
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77 var table = new google.visualization.Table(document.getElementById('pfam00078_pfam00078_RVT_1_div'));
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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78 table.draw(data, {showRowNumber: false, width: '70%', height: '70%'});
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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79
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80 }
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81 google.charts.setOnLoadCallback(pfam01787_pfam01787_Ilar_coat);
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82 function pfam01787_pfam01787_Ilar_coat() {
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83 var data = new google.visualization.DataTable();
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84 data.addColumn('string', '#OTU_name');
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85 data.addColumn('number', 'ds2020-328');
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86 data.addColumn('string', 'taxonomy');
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87 data.addColumn('string', 'contigs_list');
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88 data.addRows([
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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89 ['OTU_1',1825,'Viruses Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Ilarvirus Prune dwarf virus','ds2020-328_7']
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90 ]);
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91 var table = new google.visualization.Table(document.getElementById('pfam01787_pfam01787_Ilar_coat_div'));
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92 table.draw(data, {showRowNumber: false, width: '70%', height: '70%'});
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93
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94 }
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95 google.charts.setOnLoadCallback(pfam01573_pfam01573_Bromo_MP);
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96 function pfam01573_pfam01573_Bromo_MP() {
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97 var data = new google.visualization.DataTable();
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98 data.addColumn('string', '#OTU_name');
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99 data.addColumn('number', 'ds2020-328');
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100 data.addColumn('string', 'taxonomy');
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101 data.addColumn('string', 'contigs_list');
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102 data.addRows([
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103 ['OTU_1',1825,'Viruses Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Ilarvirus Prune dwarf virus','ds2020-328_7']
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104 ]);
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105 var table = new google.visualization.Table(document.getElementById('pfam01573_pfam01573_Bromo_MP_div'));
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106 table.draw(data, {showRowNumber: false, width: '70%', height: '70%'});
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107
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108 }
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109 </script>
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110 </head>
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111 <div style="text-align:center">
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112 <h1 align=center>rps2tree</h1>
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113 <body>
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114 <h2>pfam02123 pfam02123_RdRP_4</h2>
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115 <p>pfam02123, RdRP_4, Viral RNA-directed RNA-polymerase. This family includes RNA-dependent RNA polymerase proteins (RdRPs) from Luteovirus, Totivirus and Rotavirus.</br></p>
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116 <div id="pfam02123_pfam02123_RdRP_4_div"></div>
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117 </br>
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118 </br>
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119 <img src=pfam02123_RdRP_4/tree.dnd.png href="pfam02123_RdRP_4/tree.dnd.png">
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120 </br>
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121 <a href="pfam02123_RdRP_4/seq_aligned.final_tree.fa">pfam02123_RdRP_4/seq_aligned.final_tree.fa</a>
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122 </br>
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123 <a href="pfam02123_RdRP_4/otu_cluster.csv">pfam02123_RdRP_4/otu_cluster.csv</a>
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124 </br>
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125 <a href="pfam02123_RdRP_4/cluster_nb_reads_files.tab">pfam02123_RdRP_4/cluster_nb_reads_files.tab</a>
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126 </br>
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127 <a href="pfam02123_RdRP_4/identity_matrix.csv">pfam02123_RdRP_4/identity_matrix.csv</a>
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128 </br>
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129 </br>
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130 <hr>
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131 <h2>pfam00680 pfam00680_RdRP_1</h2>
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132 <p>pfam00680, RdRP_1, RNA dependent RNA polymerase. </br></p>
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133 <div id="pfam00680_pfam00680_RdRP_1_div"></div>
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134 </br>
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135 </br>
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136 <img src=pfam00680_RdRP_1/tree.dnd.png href="pfam00680_RdRP_1/tree.dnd.png">
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137 </br>
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138 <a href="pfam00680_RdRP_1/seq_aligned.final_tree.fa">pfam00680_RdRP_1/seq_aligned.final_tree.fa</a>
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139 </br>
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140 <a href="pfam00680_RdRP_1/otu_cluster.csv">pfam00680_RdRP_1/otu_cluster.csv</a>
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141 </br>
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142 <a href="pfam00680_RdRP_1/cluster_nb_reads_files.tab">pfam00680_RdRP_1/cluster_nb_reads_files.tab</a>
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143 </br>
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144 <a href="pfam00680_RdRP_1/identity_matrix.csv">pfam00680_RdRP_1/identity_matrix.csv</a>
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145 </br>
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146 </br>
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147 <hr>
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148 <h2>pfam00665 pfam00665_rve</h2>
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149 <p>pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.</br></p>
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150 <div id="pfam00665_pfam00665_rve_div"></div>
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151 </br>
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152 </br>
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153 <img src=pfam00665_rve/tree.dnd.png href="pfam00665_rve/tree.dnd.png">
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154 </br>
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155 <a href="pfam00665_rve/seq_aligned.final_tree.fa">pfam00665_rve/seq_aligned.final_tree.fa</a>
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156 </br>
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157 <a href="pfam00665_rve/otu_cluster.csv">pfam00665_rve/otu_cluster.csv</a>
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158 </br>
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159 <a href="pfam00665_rve/cluster_nb_reads_files.tab">pfam00665_rve/cluster_nb_reads_files.tab</a>
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160 </br>
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161 <a href="pfam00665_rve/identity_matrix.csv">pfam00665_rve/identity_matrix.csv</a>
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162 </br>
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163 </br>
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164 <hr>
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165 <h2>pfam01443 pfam01443_Viral_helicase1</h2>
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166 <p>pfam01443, Viral_helicase1, Viral (Superfamily 1) RNA helicase. Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.</br></p>
b82ce29791e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
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167 <div id="pfam01443_pfam01443_Viral_helicase1_div"></div>
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168 </br>
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169 </br>
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170 <img src=pfam01443_Viral_helicase1/tree.dnd.png href="pfam01443_Viral_helicase1/tree.dnd.png">
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171 </br>
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172 <a href="pfam01443_Viral_helicase1/seq_aligned.final_tree.fa">pfam01443_Viral_helicase1/seq_aligned.final_tree.fa</a>
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173 </br>
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174 <a href="pfam01443_Viral_helicase1/otu_cluster.csv">pfam01443_Viral_helicase1/otu_cluster.csv</a>
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175 </br>
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176 <a href="pfam01443_Viral_helicase1/cluster_nb_reads_files.tab">pfam01443_Viral_helicase1/cluster_nb_reads_files.tab</a>
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177 </br>
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178 <a href="pfam01443_Viral_helicase1/identity_matrix.csv">pfam01443_Viral_helicase1/identity_matrix.csv</a>
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179 </br>
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180 </br>
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181 <hr>
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182 <h2>pfam00078 pfam00078_RVT_1</h2>
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183 <p>pfam00078, RVT_1, Reverse transcriptase (RNA-dependent DNA polymerase). A reverse transcriptase gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. Reverse transcriptases occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses.</br></p>
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184 <div id="pfam00078_pfam00078_RVT_1_div"></div>
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185 </br>
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186 </br>
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187 <img src=pfam00078_RVT_1/tree.dnd.png href="pfam00078_RVT_1/tree.dnd.png">
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188 </br>
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189 <a href="pfam00078_RVT_1/seq_aligned.final_tree.fa">pfam00078_RVT_1/seq_aligned.final_tree.fa</a>
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190 </br>
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191 <a href="pfam00078_RVT_1/otu_cluster.csv">pfam00078_RVT_1/otu_cluster.csv</a>
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192 </br>
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193 <a href="pfam00078_RVT_1/cluster_nb_reads_files.tab">pfam00078_RVT_1/cluster_nb_reads_files.tab</a>
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194 </br>
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195 <a href="pfam00078_RVT_1/identity_matrix.csv">pfam00078_RVT_1/identity_matrix.csv</a>
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196 </br>
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197 </br>
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198 <hr>
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199 <h2>pfam01787 pfam01787_Ilar_coat</h2>
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200 <p>pfam01787, Ilar_coat, Ilarvirus coat protein. This family consists of various coat proteins from the ilarviruses part of the Bromoviridae, members include apple mosaic virus and prune dwarf virus. The ilarvirus coat protein is required to initiate replication of the viral genome in host plants. Members of the Bromoviridae have a positive stand ssRNA genome with no DNA stage in there replication.</br></p>
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201 <div id="pfam01787_pfam01787_Ilar_coat_div"></div>
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202 </br>
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203 </br>
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204 <img src=pfam01787_Ilar_coat/tree.dnd.png href="pfam01787_Ilar_coat/tree.dnd.png">
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205 </br>
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206 <a href="pfam01787_Ilar_coat/seq_aligned.final_tree.fa">pfam01787_Ilar_coat/seq_aligned.final_tree.fa</a>
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207 </br>
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208 <a href="pfam01787_Ilar_coat/otu_cluster.csv">pfam01787_Ilar_coat/otu_cluster.csv</a>
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209 </br>
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210 <a href="pfam01787_Ilar_coat/cluster_nb_reads_files.tab">pfam01787_Ilar_coat/cluster_nb_reads_files.tab</a>
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211 </br>
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212 <a href="pfam01787_Ilar_coat/identity_matrix.csv">pfam01787_Ilar_coat/identity_matrix.csv</a>
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213 </br>
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214 </br>
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215 <hr>
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216 <h2>pfam01573 pfam01573_Bromo_MP</h2>
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217 <p>pfam01573, Bromo_MP, Bromovirus movement protein. </br></p>
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218 <div id="pfam01573_pfam01573_Bromo_MP_div"></div>
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219 </br>
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220 </br>
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221 <img src=pfam01573_Bromo_MP/tree.dnd.png href="pfam01573_Bromo_MP/tree.dnd.png">
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222 </br>
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223 <a href="pfam01573_Bromo_MP/seq_aligned.final_tree.fa">pfam01573_Bromo_MP/seq_aligned.final_tree.fa</a>
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224 </br>
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225 <a href="pfam01573_Bromo_MP/otu_cluster.csv">pfam01573_Bromo_MP/otu_cluster.csv</a>
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226 </br>
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227 <a href="pfam01573_Bromo_MP/cluster_nb_reads_files.tab">pfam01573_Bromo_MP/cluster_nb_reads_files.tab</a>
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228 </br>
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229 <a href="pfam01573_Bromo_MP/identity_matrix.csv">pfam01573_Bromo_MP/identity_matrix.csv</a>
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230 </br>
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231 </br>
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232 <hr>
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233 </body>
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234 </div>
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235 </html>