Mercurial > repos > iuc > umi_tools_count
comparison test-data/out_single.log @ 0:1a893fb3ab98 draft
planemo upload commit c79a5f4a05156bb2a6035a844aa9ad8f0e59ecb5
| author | iuc |
|---|---|
| date | Thu, 21 Jun 2018 15:18:50 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:1a893fb3ab98 |
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| 1 # output generated by extract --bc-pattern=XXXNNN --stdin=/tmp/tmpAvWtMd/files/000/dataset_13.dat --stdout /tmp/tmpAvWtMd/files/000/dataset_14.dat --3prime --quality-filter-threshold 10 --quality-encoding phred33 --log=/tmp/tmpAvWtMd/files/000/dataset_15.dat | |
| 2 # job started at Wed Jan 3 17:06:20 2018 on tzk-ThinkPad-T450s -- 8897b3b4-c6e2-4ee3-b6c0-71044a63b7e1 | |
| 3 # pid: 22794, system: Linux 4.10.0-42-generic #46~16.04.1-Ubuntu SMP Mon Dec 4 15:57:59 UTC 2017 x86_64 | |
| 4 # blacklist : None | |
| 5 # compresslevel : 6 | |
| 6 # error_correct_cell : False | |
| 7 # extract_method : string | |
| 8 # filter_cell_barcode : None | |
| 9 # filter_cell_barcodes : False | |
| 10 # log2stderr : False | |
| 11 # loglevel : 1 | |
| 12 # pattern : XXXNNN | |
| 13 # pattern2 : None | |
| 14 # prime3 : True | |
| 15 # quality_encoding : phred33 | |
| 16 # quality_filter_mask : None | |
| 17 # quality_filter_threshold : 10 | |
| 18 # random_seed : None | |
| 19 # read2_in : None | |
| 20 # read2_out : False | |
| 21 # read2_stdout : False | |
| 22 # reads_subset : None | |
| 23 # reconcile : False | |
| 24 # retain_umi : None | |
| 25 # short_help : None | |
| 26 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'> | |
| 27 # stdin : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_13.dat' mode='r' encoding='UTF-8'> | |
| 28 # stdlog : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_15.dat' mode='a' encoding='UTF-8'> | |
| 29 # stdout : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_14.dat' mode='w' encoding='UTF-8'> | |
| 30 # timeit_file : None | |
| 31 # timeit_header : None | |
| 32 # timeit_name : all | |
| 33 # whitelist : None | |
| 34 2018-01-03 17:06:20,360 INFO Starting barcode extraction | |
| 35 2018-01-03 17:06:20,362 INFO Input Reads: 100 | |
| 36 2018-01-03 17:06:20,362 INFO Reads output: 72 | |
| 37 2018-01-03 17:06:20,362 INFO filtered: umi quality: 28 | |
| 38 # job finished in 0 seconds at Wed Jan 3 17:06:20 2018 -- 0.58 0.06 0.00 0.00 -- 8897b3b4-c6e2-4ee3-b6c0-71044a63b7e1 |