Mercurial > repos > iuc > trinity_run_de_analysis

comparison run_de_analysis.xml @ 14:118308b20d2c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 0264b2f90c5cee89d1620fa47470143ea8d541a2"
author iuc
date Mon, 18 Nov 2019 23:25:25 +0000
parents 0f5bfda8f46c
children 5a5904fbbcb7
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13:b6d6d365253b 14:118308b20d2c
43 43
44 --output results 44 --output results
45 45
46 ]]></command> 46 ]]></command>
47 <inputs> 47 <inputs>
48 <param format="tabular" name="matrix" argument="--matrix" type="data" label="Expression matrix" help="output of abundance_estimates_to_matrix tool"/> 48 <param format="tabular" name="matrix" argument="--matrix" type="data" label="Expression matrix" help="output of Build expression matrix - matrix of raw read counts (not normalized!)"/>
49 <param format="tabular" name="samples" argument="--samples_file" type="data" label="Sample description" help="file describing samples and replicates"/> 49 <param format="tabular" name="samples" argument="--samples_file" type="data" label="Sample description" help="file describing samples and replicates"/>
50 50
51 <conditional name="method_choice"> 51 <conditional name="method_choice">
52 <param type="select" name="method" argument="--method" label="Differential analysis method"> 52 <param type="select" name="method" argument="--method" label="Differential analysis method">
53 <option value="edgeR">edgeR</option> 53 <option value="edgeR">edgeR</option>