Mercurial > repos > iuc > transtermhp

changeset 3:b154a6b9a00a draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp commit 7f6797ad21f1d9170bf38210d0f0fde5065dccfb"
author iuc
date Tue, 03 Dec 2019 13:56:38 +0000
parents dae531fa999d
children
files transtermhp.xml
diffstat 1 files changed, 2 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/transtermhp.xml	Tue Oct 30 20:24:15 2018 -0400
+++ b/transtermhp.xml	Tue Dec 03 13:56:38 2019 +0000
@@ -6,6 +6,8 @@
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <command><![CDATA[
+## fix for TRANSTERMHP not set on containers
+TRANSTERMHP=\${TRANSTERMHP:-\$(dirname \$(command -v transterm))/../data/expterm.dat} &&
 #if $reference_genome.source == 'history':
     ln -s '$reference_genome.genome_fasta' genomeref.fa &&
 #end if