Mercurial > repos > iuc > suite_samtools

changeset 6:35f35af39b00 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/samtools commit 62d845456b6048e7f22ecdc2b323217e00253908
author iuc
date Tue, 17 Feb 2026 11:30:33 +0000
parents 35453e76582c
children
files repository_dependencies.xml
diffstat 1 files changed, 14 insertions(+), 12 deletions(-) [+]
line wrap: on
line diff
--- a/repository_dependencies.xml	Sun Sep 08 03:21:21 2024 +0000
+++ b/repository_dependencies.xml	Tue Feb 17 11:30:33 2026 +0000
@@ -1,20 +1,22 @@
 <?xml version="1.0" ?>
 <repositories description="A suite of Galaxy tools designed to work with the SAMtools package.">
     <repository owner="devteam" name="samtools_bedcov" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="540155c5abee"/>
-    <repository owner="devteam" name="samtools_calmd" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="dae754b6a98b"/>
+    <repository owner="devteam" name="samtools_calmd" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="ff7764343c37"/>
     <repository owner="iuc" name="samtools_depth" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="ad06afad0c44"/>
-    <repository owner="iuc" name="samtools_fastx" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="1c46e3315853"/>
-    <repository owner="iuc" name="samtools_fixmate" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="24db20d85bfd"/>
+    <repository owner="iuc" name="samtools_fastx" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="344c3c1177a9"/>
+    <repository owner="iuc" name="samtools_fixmate" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="bb39588ae743"/>
     <repository owner="devteam" name="samtools_flagstat" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="9b44224f5a76"/>
     <repository owner="devteam" name="samtools_idxstats" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="9a12e8643fc5"/>
-    <repository owner="iuc" name="samtools_markdup" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="95b3cda386a2"/>
-    <repository owner="iuc" name="samtools_merge" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="95fd8bf80632"/>
+    <repository owner="iuc" name="samtools_markdup" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="d70e33322da3"/>
+    <repository owner="iuc" name="samtools_merge" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="84f122ab14d6"/>
     <repository owner="devteam" name="samtools_mpileup" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="2cfdaeda9c9a"/>
-    <repository owner="devteam" name="samtools_phase" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="2504000d5158"/>
-    <repository owner="devteam" name="samtools_reheader" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="71db7f3a33b9"/>
-    <repository owner="devteam" name="samtools_sort" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="cf4d627c5cc0"/>
-    <repository owner="devteam" name="samtools_split" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="eda9f7aa1d54"/>
-    <repository owner="devteam" name="samtools_stats" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="a95f78faca04"/>
-    <repository owner="iuc" name="samtools_view" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="e41d3ce2ab9f"/>
-    <repository owner="iuc" name="samtools_coverage" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="f052a4f6e358"/>
+    <repository owner="devteam" name="samtools_phase" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="54bbc447e348"/>
+    <repository owner="devteam" name="samtools_reheader" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="4a1733940291"/>
+    <repository owner="devteam" name="samtools_sort" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="43f90a79608d"/>
+    <repository owner="devteam" name="samtools_split" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="b6caca6a4ca5"/>
+    <repository owner="devteam" name="samtools_stats" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="8fecc86e574a"/>
+    <repository owner="iuc" name="samtools_view" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="17c2bd677389"/>
+    <repository owner="iuc" name="samtools_coverage" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="3cf6efcecc68"/>
+    <repository owner="iuc" name="samtools_consensus" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="8f84f492414c"/>
+    <repository owner="iuc" name="samtools_collate" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="f4e0a4ee7a83"/>
 </repositories>
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