Mercurial > repos > iuc > squirrel_phylo

annotate test-data/sequences.tree.amino_acid.reconstruction.csv @ 3:cb39e40802ef draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/squirrel commit 68ea06281ba78b828b8d1947745161697dc0fbc5
author iuc
date Tue, 10 Jun 2025 13:32:25 +0000
parents 14936593e454
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
1 site,gene,direction,snp,dimer,apobec,aa_position,parent,parent_codon,parent_aa,child,child_codon,child_aa,mutation_category,score,prediction,homoplasy,occurrence
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
2 1355,OPG001_CDS_180,reverse,G->T,,False,2,Node1,ACT,T,DQ011155,AAT,N,nonsynonymous,65,moderately conservative,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
3 6600,NA,NA,G->T,,False,NA,Node1,NA,NA,DQ011155,NA,NA,intergenic,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
4 8973,NA,NA,C->A,,False,NA,Node1,NA,NA,DQ011155,NA,NA,intergenic,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
5 11363,OPG023_CDS_173,reverse,T->C,,False,2,Node1,TAT,Y,DQ011155,TGT,C,nonsynonymous,194,radical,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
6 21633,OPG034_CDS_165,reverse,C->T,AC,False,3,Node1,TTG,L,DQ011155,TTA,L,synonymous,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
7 35994,OPG052_CDS_148,reverse,C->G,,False,2,Node1,AGT,S,DQ011155,ACT,T,nonsynonymous,58,moderately conservative,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
8 37989,OPG054_CDS_146,reverse,T->C,,False,2,Node1,CAA,Q,DQ011155,CGA,R,nonsynonymous,43,conservative,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
9 44147,OPG062_CDS_138,forward,A->C,,False,1,Node1,AGA,R,DQ011155,CGA,R,synonymous,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
10 58283,OPG074_CDS_127,reverse,A->G,,False,3,Node1,GTT,V,DQ011155,GTC,V,synonymous,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
11 73148,OPG089_CDS_112,forward,G->A,GA,True,1,Node1,GAG,E,DQ011155,AAG,K,nonsynonymous,56,moderately conservative,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
12 83797,OPG105_CDS_96,forward,C->T,GC,False,3,Node1,AGC,S,DQ011155,AGT,S,synonymous,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
13 97065,OPG115_CDS_86,forward,C->T,GC,False,1,Node1,CAT,H,DQ011155,TAT,Y,nonsynonymous,83,moderately conservative,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
14 110532,OPG127_CDS_74,reverse,G->A,GT,False,1,Node1,CAT,H,DQ011155,TAT,Y,nonsynonymous,83,moderately conservative,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
15 132943,OPG151_CDS_50,forward,C->T,GC,False,3,Node1,CGC,R,DQ011155,CGT,R,synonymous,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
16 137411,NA,NA,G->A,GC,False,NA,Node1,NA,NA,DQ011155,NA,NA,intergenic,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
17 140036,OPG155_CDS_47,reverse,C->A,,False,2,Node1,AGA,R,DQ011155,ATA,I,nonsynonymous,97,moderately conservative,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
18 143163,OPG161_CDS_41,forward,C->T,CC,False,3,Node1,GCC,A,DQ011155,GCT,A,synonymous,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
19 159492,OPG185_CDS_24,forward,T->C,,False,3,Node1,ATT,I,DQ011155,ATC,I,synonymous,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
20 165893,OPG191_CDS_19,forward,G->A,GT,False,3,Node1,ATG,M,DQ011155,ATA,I,nonsynonymous,10,conservative,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
21 171132,OPG199_CDS_14,forward,G->A,GC,False,3,Node1,ATG,M,DQ011155,ATA,I,nonsynonymous,10,conservative,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
22 178028,NA,NA,C->T,GC,False,NA,Node1,NA,NA,DQ011155,NA,NA,intergenic,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
23 183889,OPG210_CDS_7,forward,A->C,,False,3,Node1,ACA,T,DQ011155,ACC,T,synonymous,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
24 241,NA,NA,A->C,,False,NA,Node1,NA,NA,JX878413,NA,NA,intergenic,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
25 826,NA,NA,C->T,TC,True,NA,Node1,NA,NA,JX878413,NA,NA,intergenic,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
26 1788,OPG002_CDS_179,reverse,G->A,GC,False,3,Node1,TGC,C,JX878413,TGT,C,synonymous,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
27 6100,OPG015_CDS_177,reverse,A->G,,False,2,Node1,GTA,V,JX878413,GCA,A,nonsynonymous,64,moderately conservative,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
28 8477,NA,NA,T->C,,False,NA,Node1,NA,NA,JX878413,NA,NA,intergenic,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
29 11156,OPG023_CDS_173,reverse,G->A,GC,False,2,Node1,GCC,A,JX878413,GTC,V,nonsynonymous,64,moderately conservative,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
30 16178,OPG027_CDS_170,reverse,C->A,,False,3,Node1,GAG,E,JX878413,GAT,D,nonsynonymous,45,conservative,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
31 20627,NA,NA,A->G,,False,NA,Node1,NA,NA,JX878413,NA,NA,intergenic,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
32 27593,NA,NA,C->T,TC,True,NA,Node1,NA,NA,JX878413,NA,NA,intergenic,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
33 49030,OPG066_CDS_134,reverse,C->T,CC,False,3,Node1,AAG,K,JX878413,AAA,K,synonymous,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
34 51979,OPG068_CDS_133,forward,T->C,,False,3,Node1,TTT,F,JX878413,TTC,F,synonymous,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
35 54162,OPG071_CDS_130,reverse,C->T,AC,False,3,Node1,CTG,L,JX878413,CTA,L,synonymous,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
36 87349,OPG106_CDS_95,reverse,C->T,AC,False,3,Node1,GTG,V,JX878413,GTA,V,synonymous,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
37 89411,OPG109_CDS_92,reverse,T->C,,False,3,Node1,AAA,K,JX878413,AAG,K,synonymous,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
38 118195,OPG134_CDS_67,forward,C->T,AC,False,1,Node1,CTA,L,JX878413,TTA,L,synonymous,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
39 129252,OPG148_CDS_53,forward,T->C,,False,3,Node1,TGT,C,JX878413,TGC,C,synonymous,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
40 138312,OPG153_CDS_49,reverse,G->A,GG,False,2,Node1,CCC,P,JX878413,CTC,L,nonsynonymous,98,moderately conservative,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
41 142201,OPG160_CDS_42,reverse,G->T,,False,3,Node1,TCC,S,JX878413,TCA,S,synonymous,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
42 153104,NA,NA,G->A,GT,False,NA,Node1,NA,NA,JX878413,NA,NA,intergenic,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
43 154113,NA,NA,G->A,GT,False,NA,Node1,NA,NA,JX878413,NA,NA,intergenic,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
44 157592,NA,NA,C->A,,False,NA,Node1,NA,NA,JX878413,NA,NA,intergenic,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
45 168929,NA,NA,G->T,,False,NA,Node1,NA,NA,JX878413,NA,NA,intergenic,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
46 173151,OPG201_CDS_12,forward,C->T,AC,False,2,Node1,ACA,T,JX878413,ATA,I,nonsynonymous,89,moderately conservative,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
47 176367,OPG205_CDS_10,forward,C->T,AC,False,3,Node1,AAC,N,JX878413,AAT,N,synonymous,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
48 177394,OPG205_CDS_10,forward,C->T,TC,True,1,Node1,CGT,R,JX878413,TGT,C,nonsynonymous,180,radical,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
49 186579,OPG210_CDS_7,forward,G->T,,False,2,Node1,AGA,R,JX878413,ATA,I,nonsynonymous,97,moderately conservative,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
50 187075,NA,NA,C->G,,False,NA,Node1,NA,NA,JX878413,NA,NA,intergenic,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
51 187738,NA,NA,C->T,TC,True,NA,Node1,NA,NA,JX878413,NA,NA,intergenic,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
52 190234,OPG016_CDS_5,forward,G->A,GC,False,3,Node1,TTG,L,JX878413,TTA,L,synonymous,NA,NA,False,1
14936593e454 planemo upload for repository https://github.com/aineniamh/squirrel commit ed19e40212d1e6651efb3a032d1170f4fd03b989
iuc
parents:
diff changeset
53 190759,OPG015_CDS_4,forward,T->C,,False,2,Node1,GTA,V,JX878413,GCA,A,nonsynonymous,64,moderately conservative,False,1