# HG changeset patch
# User iuc
# Date 1631344640 0
# Node ID f90f08ed98104e85ab76d994e0dee35e43466147
# Parent  c8fcfa37825c285bb00fe9faa2e3c36ae6fe03ac
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit df8a21df77acffe40c0bc0fe0409ca1b529cd7fc"

diff -r c8fcfa37825c -r f90f08ed9810 snpSift_annotate.xml
--- a/snpSift_annotate.xml	Sun Nov 29 21:14:27 2020 +0000
+++ b/snpSift_annotate.xml	Sat Sep 11 07:17:20 2021 +0000
@@ -10,12 +10,13 @@
     <expand macro="stdio" />
     <expand macro="version_command" />
     <command><![CDATA[
+ln -s '$dbSnp' 'dbSnp.vcf' &&
 SnpSift -Xmx8G annotate
 ${annotate.no_info}
 #if str($annotate.info_ids).strip():
     -info '$annotate.info_ids'
 #end if
--q '$dbSnp' '$input' > '$output'
+-q 'dbSnp.vcf' '$input' > '$output'
     ]]></command>
     <inputs>
         <param name="input" type="data" format="vcf" label="Variant input file in VCF format"/>