comparison snpEff_databases.xml @ 26:8b2a9f89e3ec draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 02789207093cd84eaa6550149869c16b257d093b"

25:166c2e25a3b6

<tool id="snpEff_databases" name="SnpEff databases:" version="@WRAPPER_VERSION@.galaxy1">
    <description> list available databases</description>
    <macros>
        <import>snpEff_macros.xml</import>
    </macros>
    <requirements>

    <expand macro="version_command" />
    <command><![CDATA[
        snpEff databases | grep -v '^---' | sed 's/^Genome/#Genome/' | sed 's/  *//g'

        #if $include_pattern:
             | grep '${include_pattern}'
        #end if

        #if $exclude_pattern:
             | grep -v '${exclude_pattern}'
        #end if

26:8b2a9f89e3ec

<tool id="snpEff_databases" name="SnpEff databases:" version="@WRAPPER_VERSION@.galaxy2">
    <description> list available databases</description>
    <macros>
        <import>snpEff_macros.xml</import>
    </macros>
    <requirements>

    <expand macro="version_command" />
    <command><![CDATA[
        snpEff databases | grep -v '^---' | sed 's/^Genome/#Genome/' | sed 's/  *//g'

        #if $include_pattern:
             | grep -e '^#' -e '${include_pattern}'
        #end if

        #if $exclude_pattern:
             | grep -v '${exclude_pattern}'
        #end if