# HG changeset patch # User iuc # Date 1617794637 0 # Node ID bd61e60350fd61af47167cd559b7a4fc5e981f96 # Parent ac6e4444e3b81b0b472ceb0408d505e0379f4f91 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snippy commit 7dec701af24e00b3328459f0a823eefd461237bb" diff -r ac6e4444e3b8 -r bd61e60350fd macros.xml --- a/macros.xml Wed Mar 11 07:50:14 2020 +0000 +++ b/macros.xml Wed Apr 07 11:23:57 2021 +0000 @@ -1,12 +1,15 @@ - snippy + snippy tar + 4.5.0 + 1 + @@ -52,13 +55,11 @@ - + - 4.5.0 - @UNPUBLISHED{Seemann2013, diff -r ac6e4444e3b8 -r bd61e60350fd snippy-core.xml --- a/snippy-core.xml Wed Mar 11 07:50:14 2020 +0000 +++ b/snippy-core.xml Wed Apr 07 11:23:57 2021 +0000 @@ -1,5 +1,5 @@ - + Combine multiple Snippy outputs into a core SNP alignment diff -r ac6e4444e3b8 -r bd61e60350fd snippy.xml --- a/snippy.xml Wed Mar 11 07:50:14 2020 +0000 +++ b/snippy.xml Wed Apr 07 11:23:57 2021 +0000 @@ -1,4 +1,4 @@ - + Snippy finds SNPs between a haploid reference genome and your NGS sequence reads. @@ -69,17 +69,17 @@ - - + + - + - + - + @@ -148,8 +148,8 @@ - - + + diff -r ac6e4444e3b8 -r bd61e60350fd snippy_clean_full_aln.xml --- a/snippy_clean_full_aln.xml Wed Mar 11 07:50:14 2020 +0000 +++ b/snippy_clean_full_aln.xml Wed Apr 07 11:23:57 2021 +0000 @@ -1,5 +1,5 @@ - + Replace any non-standard sequence characters in snippy 'core.full.aln' file. diff -r ac6e4444e3b8 -r bd61e60350fd test-data/a_1.fastq --- a/test-data/a_1.fastq Wed Mar 11 07:50:14 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,20 +0,0 @@ -@1 -tccacaagccattgtgtgtaattaaccactaattgtgtataagtttaaact -+ -IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII -@2 -tccacaagccattgtgtgtaattaaccactaattgtgtataagtttaaact -+ -IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII -@3 -tccacaagccattgtgtgtaattaaccactaattgtgtataagtttaaact -+ -IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII -@4 -tccacaagccattgtgtgtaattaaccactaattgtgtataagtttaaact -+ -IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII -@5 -tccacaagccattgtgtgtaattaaccactaattgtgtataagtttaaact -+ -IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII diff -r ac6e4444e3b8 -r bd61e60350fd test-data/a_1.fastq.gz Binary file test-data/a_1.fastq.gz has changed diff -r ac6e4444e3b8 -r bd61e60350fd test-data/a_2.fastq --- a/test-data/a_2.fastq Wed Mar 11 07:50:14 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,20 +0,0 @@ -@1 -agtttaaacttatacacaattagtggttaattacacacaatggcttgtgga -+ -IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII -@2 -agtttaaacttatacacaattagtggttaattacacacaatggcttgtgga -+ -IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII -@3 -agtttaaacttatacacaattagtggttaattacacacaatggcttgtgga -+ -IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII -@4 -agtttaaacttatacacaattagtggttaattacacacaatggcttgtgga -+ -IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII -@5 -agtttaaacttatacacaattagtggttaattacacacaatggcttgtgga -+ -IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII diff -r ac6e4444e3b8 -r bd61e60350fd test-data/a_2.fastq.gz Binary file test-data/a_2.fastq.gz has changed