# HG changeset patch # User iuc # Date 1562852423 14400 # Node ID 98413117ca70d802cf8e85ee83ddd458496252b2 # Parent a2147b3769dd2fd9eccd14791ff7e73bcf00364b planemo upload commit b5890b40c257a093ebf358294544aa69087da51e diff -r a2147b3769dd -r 98413117ca70 snippy-core.xml --- a/snippy-core.xml Tue Apr 02 17:19:05 2019 -0400 +++ b/snippy-core.xml Thu Jul 11 09:40:23 2019 -0400 @@ -12,7 +12,7 @@ #set $sample_name = os.path.splitext(os.path.basename(str($indir.name)))[0] mkdir '$sample_name' && tar -xf '$indir' -C '$sample_name' --strip-components=1 && #end for - #set snippy_dirs = ' '.join([os.path.splitext(os.path.basename(str($indir.name)))[0] for $indir in $indirs]) + #set snippy_dirs = " ".join(["'{0}'".format(os.path.splitext(os.path.basename(str($indir.name)))[0]) for $indir in $indirs]) snippy-core --ref '$ref' ${snippy_dirs}