# HG changeset patch
# User iuc
# Date 1575223533 0
# Node ID 43791d945de1d80ceebbb7b9953d6275418d6dde
# Parent  eea223efd86e794481a7fe2529c8ecb6561cf1b4
"planemo upload commit 5b41fad964a75dcdc794e90342144c3eccea16d7"

diff -r eea223efd86e -r 43791d945de1 macros.xml
--- a/macros.xml	Fri Nov 15 13:18:31 2019 +0000
+++ b/macros.xml	Sun Dec 01 18:05:33 2019 +0000
@@ -2,6 +2,7 @@
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@VERSION@">snippy</requirement>
+            <requirement type="package" version="1.32">tar</requirement>
             <yield />
         </requirements>
     </xml>
diff -r eea223efd86e -r 43791d945de1 snippy-core.xml
--- a/snippy-core.xml	Fri Nov 15 13:18:31 2019 +0000
+++ b/snippy-core.xml	Sun Dec 01 18:05:33 2019 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="snippy_core" name="snippy-core" version="@VERSION@+galaxy0">
+<tool id="snippy_core" name="snippy-core" version="@VERSION@+galaxy1">
     <description>
         Combine multiple Snippy outputs into a core SNP alignment
     </description>
diff -r eea223efd86e -r 43791d945de1 snippy.xml
--- a/snippy.xml	Fri Nov 15 13:18:31 2019 +0000
+++ b/snippy.xml	Sun Dec 01 18:05:33 2019 +0000
@@ -1,4 +1,4 @@
-<tool id="snippy" name="snippy" version="@VERSION@+galaxy0">
+<tool id="snippy" name="snippy" version="@VERSION@+galaxy1">
   <description>
       Snippy finds SNPs between a haploid reference genome and your NGS sequence reads.
     </description>
@@ -54,7 +54,7 @@
         #end if
 
         mkdir -p ${dir_name} && cp -r out/reference out/snps.tab out/snps.aligned.fa out/snps.vcf ${dir_name}/ &&
-        tar -cf - ${dir_name} | gzip > out.tgz
+		tar -czf out.tgz ${dir_name}
         #if "outcon" in str($outputs) and $adv.rename_cons
           && sed -i 's/>.*/>${dir_name}/' out/snps.consensus.fa
         #end if