Mercurial > repos > iuc > snippy

diff snippy.xml @ 9:43791d945de1 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit 5b41fad964a75dcdc794e90342144c3eccea16d7"
author iuc
date Sun, 01 Dec 2019 18:05:33 +0000
parents eea223efd86e
children a3f95a688c47
line wrap: on
line diff
--- a/snippy.xml	Fri Nov 15 13:18:31 2019 +0000
+++ b/snippy.xml	Sun Dec 01 18:05:33 2019 +0000
@@ -1,4 +1,4 @@
-<tool id="snippy" name="snippy" version="@VERSION@+galaxy0">
+<tool id="snippy" name="snippy" version="@VERSION@+galaxy1">
   <description>
       Snippy finds SNPs between a haploid reference genome and your NGS sequence reads.
     </description>
@@ -54,7 +54,7 @@
         #end if
 
         mkdir -p ${dir_name} && cp -r out/reference out/snps.tab out/snps.aligned.fa out/snps.vcf ${dir_name}/ &&
-        tar -cf - ${dir_name} | gzip > out.tgz
+		tar -czf out.tgz ${dir_name}
         #if "outcon" in str($outputs) and $adv.rename_cons
           && sed -i 's/>.*/>${dir_name}/' out/snps.consensus.fa
         #end if