view macros.xml @ 4:8a5151868549 draft

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<?xml version="1.0"?>
<macros>
  <xml name="requirements">
    <requirements>
      <requirement type="package" version="1.0-r75-dirty">seqtk</requirement>
      <yield/>
    </requirements>
  </xml>
  <token name="@WRAPPER_VERSION@">1.0-r75-dirty</token>
  <xml name="stdio">
    <stdio>
      <!-- Anything other than zero is an error -->
      <exit_code range="1:"/>
      <exit_code range=":-1"/>
      <!-- In case the return code has not been set propery check stderr too -->
      <regex match="Error:"/>
      <regex match="Exception:"/>
    </stdio>
  </xml>
  <xml name="in_fq">
    <param name="in_file" type="data" format="fastq" label="Input FASTQ file"/>
  </xml>
  <xml name="in_faq">
    <param name="in_file" type="data" format="fasta,fastq" label="Input FASTA/Q file"/>
  </xml>
  <token name="@ATTRIBUTION@"><![CDATA[
**Attribution**

This Galaxy tool relies on the seqtk toolkit from  `lh3/seqtk
<https://github.com/lh3/seqtk/>`_, developed by Heng Li at the Broad Institute
  ]]>
  </token>
</macros>