diff seqtk_subseq.xml @ 16:48a51c72f5e7 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit ad43df79dca3dc7c3511c6eb2ccf8589d2804eb2

--- a/seqtk_subseq.xml	Mon Jun 05 13:26:30 2017 -0400
+++ b/seqtk_subseq.xml	Wed Oct 17 05:58:58 2018 -0400
@@ -19,7 +19,7 @@
 #if $t == '-t':
     | awk 'BEGIN{print "chr\tunknown\tseq"}1'
 #end if
-> '$default'
+@CONDITIONAL_GZIP_OUT@
     ]]></command>
     <inputs>
         <expand macro="in_faq"/>
@@ -53,6 +53,13 @@
             <param name="name_list" value="seqtk_subseq_list.txt"/>
             <output name="default" file="seqtk_subseq.out" ftype="fasta"/>
         </test>
+        <test>
+            <param name="in_file" value="seqtk_subseq.fa.gz" ftype="fasta.gz"/>
+            <param name="type" value="name"/>
+            <param name="t" value="False" />
+            <param name="name_list" value="seqtk_subseq_list.txt"/>
+            <output name="default" file="seqtk_subseq.out.gz" ftype="fasta.gz"/>
+        </test>
     </tests>
     <help><![CDATA[
 **What it does**