Mercurial > repos > iuc > seqtk
annotate seqtk_randbase.xml @ 8:d3b46dec1f5e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit e5a5ad091c621348dc6ce2df861475ebc54a380e
| author | iuc |
|---|---|
| date | Tue, 13 Oct 2015 17:27:35 -0400 |
| parents | 55e75a28fde7 |
| children | 16f2535c08bf |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool id="seqtk_randbase" name="seqtk_randbase" version="@WRAPPER_VERSION@.0"> | |
| 3 <description>choose a random base from hets</description> | |
| 4 <macros> | |
| 5 <import>macros.xml</import> | |
| 6 </macros> | |
| 7 <expand macro="requirements"/> | |
| 8 <expand macro="stdio"/> | |
| 9 <command><![CDATA[seqtk randbase | |
| 10 $in_file | |
| 11 > $default]]></command> | |
| 12 <inputs> | |
| 13 <expand macro="in_faq"/> | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data format_source="in_file" hidden="false" name="default" label="Unambiguous $in_file.name"/> | |
| 17 </outputs> | |
| 18 <tests> | |
| 19 <test> | |
| 20 <param name="in_file" value="seqtk_randbase.fa"/> | |
| 21 <output name="default" file="seqtk_randbase.out" ftype="fasta"/> | |
| 22 </test> | |
| 23 </tests> | |
| 24 <help><![CDATA[ | |
| 25 **What it does** | |
| 26 | |
| 27 Randomly resolves ambiguous bases | |
| 28 | |
| 29 :: | |
| 30 | |
| 31 # Input fasta | |
| 32 >ambig | |
| 33 ACGTMRWSYK | |
| 34 | |
| 35 results in | |
| 36 | |
| 37 :: | |
| 38 | |
| 39 # Output result | |
| 40 >ambig | |
| 41 ACGTCGTGTT | |
| 42 | |
| 43 @ATTRIBUTION@ | |
| 44 ]]></help> | |
|
7
55e75a28fde7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 344140b8df53b8b7024618bb04594607a045c03a
iuc
parents:
0
diff
changeset
|
45 <expand macro="citation" /> |
| 0 | 46 </tool> |