Mercurial > repos > iuc > seqtk

annotate seqtk_randbase.xml @ 17:069c8f0695ee draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 83ecfe7d9bbf03c91f27ba18776352a1ebf8cf6f
author iuc
date Fri, 11 Jan 2019 05:14:48 -0500
parents 48a51c72f5e7
children 8f26884c60b6
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1 <?xml version="1.0"?>
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2 <tool id="seqtk_randbase" name="seqtk_randbase" version="@TOOL_VERSION@.1">
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3 <description>choose a random base from hets</description>
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4 <macros>
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5 <import>macros.xml</import>
16f2535c08bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
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6 </macros>
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7 <expand macro="requirements"/>
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8 <expand macro="stdio"/>
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9 <command><![CDATA[
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10 seqtk randbase
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11 '$in_file'
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12 @CONDITIONAL_GZIP_OUT@
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13 ]]></command>
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14 <inputs>
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15 <expand macro="in_faq"/>
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16 </inputs>
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17 <outputs>
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18 <data name="default" format_source="in_file" label="Unambiguous $in_file.name"/>
16f2535c08bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
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19 </outputs>
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20 <tests>
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21 <test>
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22 <param name="in_file" value="seqtk_randbase.fa"/>
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23 <output name="default" file="seqtk_randbase.out" ftype="fasta" compare="sim_size"/>
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24 </test>
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25 <test>
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26 <param name="in_file" value="seqtk_randbase.fa.gz" ftype="fasta.gz"/>
48a51c72f5e7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit ad43df79dca3dc7c3511c6eb2ccf8589d2804eb2
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27 <output name="default" file="seqtk_randbase.out.gz" ftype="fasta.gz" compare="sim_size"/>
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28 </test>
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29 </tests>
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30 <help><![CDATA[
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31 **What it does**
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32
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33 Randomly resolves ambiguous bases
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34
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35 ::
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36
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37 # Input fasta
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38 >ambig
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39 ACGTMRWSYK
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40
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41 results in
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42
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43 ::
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44
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45 # Output result
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46 >ambig
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47 ACGTCGTGTT
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48
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49 @ATTRIBUTION@
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50 ]]></help>
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51 <expand macro="citation" />
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52 </tool>