Mercurial > repos > iuc > seacr
comparison seacr.xml @ 1:9f228eac822b draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seacr commit f7c7e646aa289679a205cc8ce74a77608ce8f422"
| author | iuc |
|---|---|
| date | Thu, 23 Apr 2020 08:29:51 +0000 |
| parents | 4c1d138e0231 |
| children |
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| 0:4c1d138e0231 | 1:9f228eac822b |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool id="chromhmm_seacr" name="SEACR " version="@TOOL_VERSION@+@WRAPPER_VERSION@"> | 2 <tool id="seacr" name="SEACR" version="@TOOL_VERSION@+@WRAPPER_VERSION@"> |
| 3 <description>for sparse enrichment analysis</description> | 3 <description>for sparse enrichment analysis</description> |
| 4 <macros> | 4 <macros> |
| 5 <token name="@TOOL_VERSION@">1.3</token> | 5 <token name="@TOOL_VERSION@">1.3</token> |
| 6 <token name="@WRAPPER_VERSION@">galaxy0</token> | 6 <token name="@WRAPPER_VERSION@">galaxy1</token> |
| 7 </macros> | 7 </macros> |
| 8 <requirements> | 8 <requirements> |
| 9 <requirement type="package" version="@TOOL_VERSION@">seacr</requirement> | 9 <requirement type="package" version="@TOOL_VERSION@">seacr</requirement> |
| 10 <requirement type="package" version="2.29.2">bedtools</requirement> | 10 <requirement type="package" version="2.29.2">bedtools</requirement> |
| 11 </requirements> | 11 </requirements> |
| 60 </conditional> | 60 </conditional> |
| 61 <param name="normalize" value="norm"/> | 61 <param name="normalize" value="norm"/> |
| 62 <param name="mode" value="stringent"/> | 62 <param name="mode" value="stringent"/> |
| 63 <output name="out_s"> | 63 <output name="out_s"> |
| 64 <assert_contents> | 64 <assert_contents> |
| 65 <has_n_lines n="103"/> | 65 <has_n_lines n="46"/> |
| 66 <has_line line="I	3463	3717	609	4	I:3557-3599"/> | 66 <has_line line="chr1	10013	10468	549.991	1.7156	chr1:10346-10357"/> |
| 67 <has_line line="I	225524	225978	1100	5	I:225655-225672"/> | 67 <has_line line="chr1	365935	366920	84.9934	0.142966	chr1:366191-366801"/> |
| 68 </assert_contents> | 68 </assert_contents> |
| 69 </output> | 69 </output> |
| 70 </test> | 70 </test> |
| 71 <!-- #2 --> | 71 <!-- #2 --> |
| 72 <test expect_num_outputs="1"> | 72 <test expect_num_outputs="1"> |
| 77 </conditional> | 77 </conditional> |
| 78 <param name="normalize" value="non"/> | 78 <param name="normalize" value="non"/> |
| 79 <param name="mode" value="relaxed"/> | 79 <param name="mode" value="relaxed"/> |
| 80 <output name="out_r"> | 80 <output name="out_r"> |
| 81 <assert_contents> | 81 <assert_contents> |
| 82 <has_n_lines n="483"/> | 82 <has_n_lines n="200"/> |
| 83 <has_line line="I	507	665	200	2	I:565-607"/> | 83 <has_line line="chr1	10013	10468	549.991	1.7156	chr1:10346-10357"/> |
| 84 <has_line line="I	226156	226330	199	2	I:226231-226256"/> | 84 <has_line line="chr1	367832	368025	13.7963	0.0714832	chr1:367832-368025"/> |
| 85 </assert_contents> | |
| 86 </output> | |
| 87 </test> | |
| 88 <!-- #3 --> | |
| 89 <test expect_num_outputs="1"> | |
| 90 <param name="bedgraph" value="test.bedgraph"/> | |
| 91 <conditional name="control_cond"> | |
| 92 <param name="control_sel" value="f"/> | |
| 93 <param name="f" value="control.bedgraph"/> | |
| 94 </conditional> | |
| 95 <param name="normalize" value="norm"/> | |
| 96 <param name="mode" value="relaxed"/> | |
| 97 <output name="out_r"> | |
| 98 <assert_contents> | |
| 99 <has_n_lines n="7"/> | |
| 100 <has_line line="chr1	10596	11929	430.615	0.714832	chr1:11036-11191"/> | |
| 101 <has_line line="chr1	251258	252108	384.65	1.00076	chr1:251347-251526"/> | |
| 85 </assert_contents> | 102 </assert_contents> |
| 86 </output> | 103 </output> |
| 87 </test> | 104 </test> |
| 88 </tests> | 105 </tests> |
| 89 <help><![CDATA[ | 106 <help><![CDATA[ |