Mercurial > repos > iuc > scanpy_normalize
diff normalize.xml @ 7:6a0ff3769481 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
author | iuc |
---|---|
date | Wed, 20 May 2020 12:18:56 +0000 |
parents | 51b1da3700c1 |
children | d6f11eb06edb |
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--- a/normalize.xml Thu Feb 20 13:20:16 2020 +0000 +++ b/normalize.xml Wed May 20 12:18:56 2020 +0000 @@ -91,8 +91,12 @@ </when> <when value="False"/> </conditional> - <param argument="key_added" type="text" value="" optional="true" label="Name of the field in 'adata.obs' where the normalization factor is stored" help=""/> - <param argument="layers" type="text" value="" optional="true" label="List of layers to normalize" help="'All' will normalize all layers. The list should be comma-separated."/> + <param argument="key_added" type="text" value="" optional="true" label="Name of the field in 'adata.obs' where the normalization factor is stored" help=""> + <expand macro="sanitize_query" /> + </param> + <param argument="layers" type="text" value="" optional="true" label="List of layers to normalize" help="'All' will normalize all layers. The list should be comma-separated."> + <expand macro="sanitize_query" /> + </param> <param argument="layer_norm" type="select" label="How to normalize layers?"> <option value="None">None: after normalization, for each layer in layers each cell has a total count equal to the median of the median of the total counts (cells) before normalization of the layer.</option> <option value="after">After: for each layer in layers each cell has a total count equal to target_sum.</option>