# HG changeset patch # User iuc # Date 1576160337 0 # Node ID 0b7f5380c73b409fe74bfbc4dc415cbf5c4c353e # Parent b78937efe087ea8f79dc4e1ddda2e466cd7579eb "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d" diff -r b78937efe087 -r 0b7f5380c73b cluster_reduce_dimension.xml --- a/cluster_reduce_dimension.xml Thu Dec 05 12:05:48 2019 +0000 +++ b/cluster_reduce_dimension.xml Thu Dec 12 14:18:57 2019 +0000 @@ -7,7 +7,7 @@ - + @@ -74,7 +74,7 @@ sc.tl.louvain( adata=adata, flavor = '$method.flavor.flavor', - #if $method.flavor.flavor == 'vtraag' and $method.flavor.resolution + #if $method.flavor.flavor == 'vtraag' resolution=$method.flavor.resolution, #end if random_state=$method.random_state, @@ -185,16 +185,16 @@ - - - - - - - - - - + + + + + + + + + + @@ -203,7 +203,7 @@ - @@ -239,14 +239,14 @@ - - + + - + - + @@ -259,17 +259,17 @@ - + - + - - + + diff -r b78937efe087 -r 0b7f5380c73b macros.xml --- a/macros.xml Thu Dec 05 12:05:48 2019 +0000 +++ b/macros.xml Thu Dec 12 14:18:57 2019 +0000 @@ -1,7 +1,7 @@ 1.4.4.post1 19.01 - + scanpy @@ -351,10 +351,10 @@ - + - + @@ -378,12 +378,12 @@ - - + + - + @@ -404,27 +404,20 @@ - + - + - - - - - - - - + + + + + + + + + + 0: #set $var_group_positions=[] @@ -673,7 +677,7 @@ - + @@ -742,7 +746,7 @@ saturation=$method.seaborn_violinplot.saturation, ]]> - + - - + + - - - + + + + @@ -814,12 +824,14 @@ - + + - + + @@ -835,9 +847,21 @@ + + + + @@ -879,7 +903,7 @@ ]]> - + @@ -894,6 +918,7 @@ + @@ -905,21 +930,20 @@ @@ -937,22 +961,22 @@ - + - + - + - + - + @@ -1022,12 +1046,158 @@ ]]> - + - + + + + + + + + + + + + + + + + + + + + + +
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+ + diff -r b78937efe087 -r 0b7f5380c73b test-data/pl.rank_genes_groups_dotplot.rank_genes_groups.krumsiek11.png Binary file test-data/pl.rank_genes_groups_dotplot.rank_genes_groups.krumsiek11.png has changed diff -r b78937efe087 -r 0b7f5380c73b test-data/pl.rank_genes_groups_heatmap.rank_genes_groups.krumsiek11.png Binary file test-data/pl.rank_genes_groups_heatmap.rank_genes_groups.krumsiek11.png has changed diff -r b78937efe087 -r 0b7f5380c73b test-data/pl.rank_genes_groups_matrixplot.rank_genes_groups.krumsiek11.png Binary file test-data/pl.rank_genes_groups_matrixplot.rank_genes_groups.krumsiek11.png has changed diff -r b78937efe087 -r 0b7f5380c73b test-data/pl.rank_genes_groups_stacked_violin.rank_genes_groups.krumsiek11.png Binary file test-data/pl.rank_genes_groups_stacked_violin.rank_genes_groups.krumsiek11.png has changed diff -r b78937efe087 -r 0b7f5380c73b test-data/pp.highly_variable_genes.krumsiek11-cell_ranger.h5ad Binary file test-data/pp.highly_variable_genes.krumsiek11-cell_ranger.h5ad has changed