diff cluster_reduce_dimension.xml @ 16:f68aa37a20ab draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 0f11c0478793eaafc7d3bd2e7916ee546528b45f

--- a/cluster_reduce_dimension.xml	Thu Sep 19 06:38:34 2024 +0000
+++ b/cluster_reduce_dimension.xml	Thu Oct 03 22:38:51 2024 +0000
@@ -224,7 +224,7 @@
 #end if
 
 @CMD_ANNDATA_WRITE_OUTPUTS@
-        ]]>     
+        ]]>
         </configfile>
     </configfiles>
     <inputs>
@@ -479,7 +479,7 @@
                 </assert_contents>
             </output>
         </test>
-        
+
         <!-- test 5 -->
         <test expect_num_outputs="2">
             <param name="adata" value="pp.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad"/>
@@ -501,7 +501,7 @@
                 </assert_contents>
             </output>
         </test>
-        
+
         <!-- test 6 -->
         <test expect_num_outputs="2">
             <param name="adata" value="krumsiek11.h5ad"/>
@@ -529,7 +529,7 @@
                 </assert_contents>
             </output>
         </test>
-        
+
         <!-- test 7 -->
         <test expect_num_outputs="2">
             <param name="adata" value="pp.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad"/>
@@ -581,7 +581,7 @@
             <output name="anndata_out" ftype="h5ad">
                 <assert_contents>
                     <has_h5_keys keys="uns/draw_graph"/>
-                    <has_h5_keys keys="obsm/X_draw_graph_fr"/>
+                    <has_h5_keys keys="obsm/X_draw_graph_fa"/>
                 </assert_contents>
             </output>
         </test>
@@ -615,7 +615,7 @@
         </test>
 
         <!-- test 10 -->
-        <test expect_num_outputs="2">    
+        <test expect_num_outputs="2">
             <param name="adata" value="pp.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad"/>
             <conditional name="method">
                 <param name="method" value="tl.paga"/>
@@ -665,7 +665,7 @@
         </test>
     </tests>
     <help><![CDATA[
-        
+
 Cluster cells into subgroups (`tl.louvain`)
 ===========================================