# HG changeset patch
# User iuc
# Date 1567726354 14400
# Node ID a27cd1e0d9a5865f3ed7eef524b85298fb680ff4
# Parent  ce3f4ecc925830e6f0918d62636f29d47e6077dd
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit e2a10eeee8765ba6cf03847562e56cdaeaf4ba5c"

diff -r ce3f4ecc9258 -r a27cd1e0d9a5 samtools_merge.xml
--- a/samtools_merge.xml	Fri Sep 28 04:24:35 2018 -0400
+++ b/samtools_merge.xml	Thu Sep 05 19:32:34 2019 -0400
@@ -15,7 +15,7 @@
 #for $i, $bam in enumerate( $bamfiles ):
     #if $bam.is_of_type('sam', 'cram', ):
         samtools sort
-        -@ \$addthreads -m \${GALAXY_MEMORY_MB:-768}M -T sorttemp
+        -@ \$addthreads -m \${GALAXY_MEMORY_MB:-768}M -T "\${TMPDIR:-.}"
         -O sam
         -o ${i}.sam
         '$bam' &&