Mercurial > repos > iuc > samtools_merge

annotate test-data/test_input_1_a_regex.sam @ 4:95fd8bf80632 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 5cb103832529f17e5c72e7f122758c13519fbe5e
author iuc
date Mon, 15 Aug 2022 09:11:35 +0000
parents ce3f4ecc9258
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
1 @HD VN:1.4
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
2 @SQ SN:insert LN:599
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
3 @SQ SN:ref1|this=that LN:45
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
4 @SQ SN:ref2*HLA:1a:2:b LN:40
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
5 @SQ SN:ref3 LN:4
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
6 @RG ID:fish PG:donkey
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
7 @RG ID:cow PU:13_&^&&*(:332
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
8 @RG PU:*9u8jkjjkjd: ID:colt
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
9 @PG ID:bull PP:donkey
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
10 @PG ID:donkey
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
11 @PG ID:moose
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
12 @PG PP:moose ID:cow
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
13 @CO
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
14 r000 99 insert 50 30 10M = 80 30 ATTTAGCTAC AAAAAAAAAA RG:Z:cow PG:Z:bull
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
15 r000 211 insert 80 30 10M = 50 -30 CCCAATCATT AAAAAAAAAA RG:Z:cow PG:Z:bull
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
16 r001 163 ref1|this=that 7 30 8M4I4M1D3M = 37 39 TTAGATAAAGAGGATACTG * XX:B:S,12561,2,20,112 YY:i:100 RG:Z:fish PG:Z:colt
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
17 r002 0 ref1|this=that 9 30 1S2I6M1P1I1P1I4M2I * 0 0 AAAAGATAAGGGATAAA * XA:Z:abc XB:i:-10 PG:Z:colt
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
18 r003 0 ref1|this=that 9 30 5H6M * 0 0 AGCTAA * RG:Z:cow
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
19 r004 0 ref1|this=that 16 30 6M14N1I5M * 0 0 ATAGCTCTCAGC * RG:Z:colt PG:Z:colt
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
20 r003 16 ref1|this=that 29 30 6H5M * 0 0 TAGGC * RG:Z:cow PG:Z:colt
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
21 r001 83 ref1|this=that 37 30 9M = 7 -39 CAGCGCCAT * RG:Z:fish PG:Z:colt
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
22 x1 0 ref2*HLA:1a:2:b 1 30 20M * 0 0 AGGTTTTATAAAACAAATAA * RG:Z:colt PG:Z:bull
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
23 x2 0 ref2*HLA:1a:2:b 2 30 21M * 0 0 GGTTTTATAAAACAAATAATT ????????????????????? RG:Z:colt PG:Z:bull
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
24 x3 0 ref2*HLA:1a:2:b 6 30 9M4I13M * 0 0 TTATAAAACAAATAATTAAGTCTACA ?????????????????????????? RG:Z:fish PG:Z:bull
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
25 x4 0 ref2*HLA:1a:2:b 10 30 25M * 0 0 CAAATAATTAAGTCTACAGAGCAAC ????????????????????????? RG:Z:fish PG:Z:bull
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
26 x5 0 ref2*HLA:1a:2:b 12 30 24M * 0 0 AATAATTAAGTCTACAGAGCAACT ???????????????????????? RG:Z:fish PG:Z:bull
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
27 x6 0 ref2*HLA:1a:2:b 14 30 23M * 0 0 TAATTAAGTCTACAGAGCAACTA ??????????????????????? RG:Z:cow
ce3f4ecc9258 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
iuc
parents:
diff changeset
28 u1 4 * 0 30 23M * 0 0 TAATTAAGTCTACAGAAAAAAAA ???????????????????????