Mercurial > repos > iuc > rpy_statistics_collection
diff scatterplot.xml @ 1:2e7bc1bb2dbe draft default tip
Uploaded
| author | iuc |
|---|---|
| date | Fri, 09 Jan 2015 12:56:07 -0500 |
| parents | ffcdde989859 |
| children |
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--- a/scatterplot.xml Tue Jul 29 06:30:45 2014 -0400 +++ b/scatterplot.xml Fri Jan 09 12:56:07 2015 -0500 @@ -1,70 +1,75 @@ -<tool id="scatterplot_rpy" name="Scatterplot" version="1.1.0"> - <description>of two numeric columns</description> - <expand macro="requirements" /> - <macros> - <import>statistic_tools_macros.xml</import> - </macros> - <command interpreter="python">scatterplot.py $input $out_file1 $col1 $col2 "$title" "$xlab" "$ylab"</command> - <inputs> - <param name="input" type="data" format="tabular" label="Dataset" help="Dataset missing? See TIP below"/> - <param name="col1" type="data_column" data_ref="input" numerical="True" label="Numerical column for x axis" /> - <param name="col2" type="data_column" data_ref="input" numerical="True" label="Numerical column for y axis" /> - <param name="title" size="30" type="text" value="Scatterplot" label="Plot title"/> - <param name="xlab" size="30" type="text" value="V1" label="Label for x axis"/> - <param name="ylab" size="30" type="text" value="V2" label="Label for y axis"/> - </inputs> - <outputs> - <data format="pdf" name="out_file1" /> - </outputs> - - <tests> - <test> - <param name="input" value="scatterplot_in1.tabular" ftype="tabular"/> - <param name="col1" value="2"/> - <param name="col2" value="3"/> - <param name="title" value="Scatterplot"/> - <param name="xlab" value="V1"/> - <param name="ylab" value="V2"/> - <output name="out_file1" file="scatterplot_out1.pdf" /> - </test> - </tests> - <help> - -.. class:: infomark - -**TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* - ------ - -**Syntax** - -This tool creates a simple scatter plot between two variables containing numeric values of a selected dataset. - -- All invalid, blank and comment lines in the dataset are skipped. The number of skipped lines is displayed in the resulting history item. - -- **Plot title** The scatterplot title -- **Label for x axis** and **Label for y axis** The labels for x and y axis of the scatterplot. - ------ - -**Example** - -- Input file:: - - 1 68 4.1 - 2 71 4.6 - 3 62 3.8 - 4 75 4.4 - 5 58 3.2 - 6 60 3.1 - 7 67 3.8 - 8 68 4.1 - 9 71 4.3 - 10 69 3.7 - -- Create a simple scatterplot between the variables in column 2 and column 3 of the above dataset. - -.. image:: $PATH_TO_IMAGES/images/scatterplot.png - -</help> -</tool> +<tool id="scatterplot_rpy" name="Scatterplot" version="1.1.0"> + <description>of two numeric columns</description> + <expand macro="requirements" /> + <macros> + <import>statistic_tools_macros.xml</import> + </macros> + <command interpreter="python"> +<![CDATA[ + scatterplot.py $input $out_file1 $col1 $col2 "$title" "$xlab" "$ylab" +]]> + </command> + <inputs> + <param name="input" type="data" format="tabular" label="Dataset" help="Dataset missing? See TIP below"/> + <param name="col1" type="data_column" data_ref="input" numerical="True" label="Numerical column for x axis" /> + <param name="col2" type="data_column" data_ref="input" numerical="True" label="Numerical column for y axis" /> + <param name="title" size="30" type="text" value="Scatterplot" label="Plot title"/> + <param name="xlab" size="30" type="text" value="V1" label="Label for x axis"/> + <param name="ylab" size="30" type="text" value="V2" label="Label for y axis"/> + </inputs> + <outputs> + <data format="pdf" name="out_file1" /> + </outputs> + <tests> + <test> + <param name="input" value="scatterplot_in1.tabular" ftype="tabular"/> + <param name="col1" value="2"/> + <param name="col2" value="3"/> + <param name="title" value="Scatterplot"/> + <param name="xlab" value="V1"/> + <param name="ylab" value="V2"/> + <output name="out_file1" file="scatterplot_out1.pdf" /> + </test> + </tests> + <help> +<![CDATA[ + +.. class:: infomark + +**TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* + +----- + +**Syntax** + +This tool creates a simple scatter plot between two variables containing numeric values of a selected dataset. + +- All invalid, blank and comment lines in the dataset are skipped. The number of skipped lines is displayed in the resulting history item. + +- **Plot title** The scatterplot title +- **Label for x axis** and **Label for y axis** The labels for x and y axis of the scatterplot. + +----- + +**Example** + +- Input file:: + + 1 68 4.1 + 2 71 4.6 + 3 62 3.8 + 4 75 4.4 + 5 58 3.2 + 6 60 3.1 + 7 67 3.8 + 8 68 4.1 + 9 71 4.3 + 10 69 3.7 + +- Create a simple scatterplot between the variables in column 2 and column 3 of the above dataset. + +.. image:: $PATH_TO_IMAGES/images/scatterplot.png + +]]> + </help> +</tool>