# HG changeset patch # User iuc # Date 1723446893 0 # Node ID 9f65d5e29e943abb75b1b67212cf231f6a8855d8 # Parent 8941e2fa1dac3d3a2d0193e25e43ee9fecf3be08 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pear commit c142110046b4ed562e8240a65f5603640752dc2e diff -r 8941e2fa1dac -r 9f65d5e29e94 pear.xml --- a/pear.xml Wed Sep 01 07:56:52 2021 +0000 +++ b/pear.xml Mon Aug 12 07:14:53 2024 +0000 @@ -1,23 +1,37 @@ - + Paired-End read merger + + 0.9.6 + 3 + + + + + + + + + + + + + + + pear - pear + pear - - - - - - - + 0: + #if $max_assembly_length and int($max_assembly_length) > 0: --max-asm-length $max_assembly_length #end if --min-asm-length $min_assembly_length @@ -46,7 +60,7 @@ --max-uncalled-base $max_uncalled_base --test-method $test_method --empirical-freqs $empirical_freqs - -j "\${GALAXY_SLOTS:-8}" + --threads "\${GALAXY_SLOTS:-8}" --score-method $score_method --cap $cap $nbase @@ -55,95 +69,103 @@ - - + + - - + + - + - - - - - - - - - - - - - - - - - + + + + + + + + - + - - - - + + - + - - - - - + + + + - + + 'assembled' in outputs - - 'forward' in outputs + + + 'unassembled_forward' in outputs - - 'reverse' in outputs + + + 'unassembled_reverse' in outputs - + + 'discarded' in outputs - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - - 10.1093/bioinformatics/btt593 - + + 10.1093/bioinformatics/btt593 +