# HG changeset patch # User iuc # Date 1719858528 0 # Node ID 012bfdde24407788a734c31c47658e069536f0a2 # Parent 67832417fba21de5ce04ffaffe89d5f9a56cc8da planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pbmm2 commit e7eed8294ff51dbbd819ace7184b2a555677d770 diff -r 67832417fba2 -r 012bfdde2440 macros.xml --- a/macros.xml Mon Mar 13 11:33:49 2023 +0000 +++ b/macros.xml Mon Jul 01 18:28:48 2024 +0000 @@ -1,5 +1,5 @@ - 1.10.0 + 1.14.99 0 20.09 diff -r 67832417fba2 -r 012bfdde2440 pbmm2.xml --- a/pbmm2.xml Mon Mar 13 11:33:49 2023 +0000 +++ b/pbmm2.xml Mon Jul 01 18:28:48 2024 +0000 @@ -20,6 +20,13 @@ ## run pbmm2 pbmm2 align -j \${GALAXY_SLOTS:-4} + #if str($output_options.l): + -l $output_options.l + #end if + #if str($output_options.N): + -N $output_options.N + #end if + --preset $preset '$reads_fn' '$ref_fn' out.aligned.bam @@ -45,10 +52,21 @@ - + + + + + + + +
+ + +
- + @@ -67,9 +85,10 @@ + - + @@ -108,5 +127,16 @@ pbgcpp (previously known as GenomicConsensus). ]]> + + +@misc{githubpbmm2, + author = {PacBio}, + year = {2023}, + title = {pbmm2}, + publisher = {GitHub}, + journal = {GitHub repository}, + url = {https://github.com/PacificBiosciences/pbmm2}, +} +