Mercurial > repos > iuc > package_ucsc_tools
changeset 0:535261946ba0 draft default tip
Uploaded
author | iuc |
---|---|
date | Thu, 26 Feb 2015 06:19:37 -0500 |
parents | |
children | |
files | tool_dependencies.xml |
diffstat | 1 files changed, 44 insertions(+), 0 deletions(-) [+] |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu Feb 26 06:19:37 2015 -0500 @@ -0,0 +1,44 @@ +<?xml version='1.0' encoding='utf-8'?> +<tool_dependency> + <!-- This package will not track any version of the underlying toools. + Any hint how to compile or ship the binaries without violating the license is very much appreciated. + --> + <package name="ucsc_tools" version="0.1"> + <install version="1.0"> + <actions> + <action type="download_binary"> + <url_template os="linux" architecture="x86_64">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig</url_template> + <url_template os="darwin" architecture="i686">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.i386/bedGraphToBigWig</url_template> + <url_template os="darwin" architecture="i386">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.i386/bedGraphToBigWig</url_template> + <url_template os="darwin" architecture="x86_64">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedGraphToBigWig</url_template> + </action> + <action type="chmod"> + <file mode="755">$INSTALL_DIR/bedGraphToBigWig</file> + </action> + <action type="download_binary"> + <url_template os="linux" architecture="x86_64">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigInfo</url_template> + <url_template os="darwin" architecture="i686">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.i386/bigWigInfo</url_template> + <url_template os="darwin" architecture="i386">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.i386/bigWigInfo</url_template> + <url_template os="darwin" architecture="x86_64">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigInfo</url_template> + </action> + <action type="chmod"> + <file mode="755">$INSTALL_DIR/bigWigInfo</file> + </action> + <action type="download_binary"> + <url_template os="linux" architecture="x86_64">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigToBedGraph</url_template> + <url_template os="darwin" architecture="i686">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.i386/bigWigToBedGraph</url_template> + <url_template os="darwin" architecture="i386">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.i386/bigWigToBedGraph</url_template> + <url_template os="darwin" architecture="x86_64">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigToBedGraph</url_template> + </action> + <action type="chmod"> + <file mode="755">$INSTALL_DIR/bigWigToBedGraph</file> + </action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + <environment_variable name="UCSC_TOOLS_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme>The tools downloaded by this dependency definition are free for academic use. TODO: UCSC tools are only available with their latest version. That is not good for reproducibility.</readme> + </package> +</tool_dependency>