comparison tool_dependencies.xml @ 0:b83db9c73d4b draft

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<?xml version="1.0"?>
<tool_dependency>
    <package name="squid" version="1.9g">
        <install version="1.0">
            <actions>
                <action type="download_by_url" target_filename="squid-1.9g.tar.gz">http://selab.janelia.org/software/squid/squid.tar.gz</action>
                <action type="autoconf">--enable-lfs</action>
                <action type="set_environment">
                    <environment_variable name="LIBRARY_PATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable>
                    <environment_variable name="SQUID_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                    <environment_variable name="C_INCLUDE_PATH" action="prepend_to">$INSTALL_DIR/include</environment_variable>
                    <environment_variable name="CPLUS_INCLUDE_PATH" action="prepend_to">$INSTALL_DIR/include</environment_variable>
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
<![CDATA[
SQUID - library of functions for biological sequence analysis
Copyright (C) 1992-2002 Washington University School of Medicine

SQUID is a freely redistributable library of C code functions for
sequence analysis. SQUID also includes a number of small utility
programs.

To install squid, see the file:
  INSTALL      -- instructions for installing the programs

If you have any questions about redistributing squid or using 
squid code in your own work, see the files:
  COPYRIGHT    -- copyright notice, and information on my distribution policy
  LICENSE      -- version 2 of the GNU Public License (see COPYRIGHT)

For a web page with more information on squid, see:
  http://www.genetics.wustl.edu/eddy/software/#squid

You can always download the latest stable release of squid from:
  ftp://ftp.genetics.wustl.edu/pub/eddy/software/squid.tar.gz

The development codebase is available by anonymous CVS:
  cvs -d :pserver:[e-mail]:/repository/sre login
   (password "anonymous")
  cvs -d :pserver:[e-mail]:/repository/sre checkout squid

If you encounter any bugs in this library, or you have any questions
or comments, please e-mail me at the address below. Due to limited
personal time, I may not respond, but I do read all my mail.

   Sean Eddy
   [e-mail]

   HHMI/Dept. of Genetics
   Washington University School of Medicine
   660 South Euclid Box 8232
   Saint Louis Missouri 63110
   USA
]]>
        </readme>
    </package>
</tool_dependency>